LOC113540665 (LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505)


Basic Information

Item Value
gene id LOC113540665
gene name LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29564221 ~ 29575727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937263.2
AACTTGGGGAACTGCGTGTCCTCTGTGTAGAAAAACACTTTGCCGTCTGGGACTGCTACACAACACACGCTCTGGTGCTCAGCTGAGCCTCTGGATCTCTAAAGATAAAATCTGCATTATTCATCTGCACGGTTCTTCTCACCAACAGTTAACTCCTTCTACTGTCATTCATCATCGTTAGAGGATAAACTCTTGGACATGCGCCGAGTACTTTGCCCCTCATTTAGGGCAGACTCGGACCCAGACCTGAAAGCACCAGTGGGTCCTGATGGCCAGGCAGAGAAGATGGTGATGAGGAGGGAGATCTCTCTTGCCAGCGGGGTGTGCCTCATCGTGGGAAACATGATCGGCTCAGGGATCTTTGTCTCGCCCAAAGGCGTTCTCCTACACAGTGCATCTTATGGCCTGTCGCTGCTCATCTGGGCACTCGGGGGCTTGTTTTCTGTCTTCGGTGCCCTCTGCTATGCTGAGCTTGGCACCACCATTGGCAAGTCAGGTGCCAGCTACGCCTACATTCTGGAGGCCTTTGGTGGATTCCTGGCCTTCATCCGCCTATGGACTTCAATCCTGCTGGTGGAGCCAGCGAGCCAGGCTGTCATCTCGCTGACGTTTGCTAACTACCTGGTGGAGGCTCTGTACCCGACGTGCCAACCTCCATACGATGCTGTGAGAGTCATCGCTGCTGCCTGCATCTGTGTGCTGATCTTTATAAACTGTGCTTATGTGAAGTGGGGAACTCTGGTCCAGGATATCTTTACCTACACCAAGATCTTttccctcatcctcatcattgCAATTggcattataaaaataattcaagGAGAGACTCAGAACTTTGAGAACCCATTCGAGGGCTCCTCCATGGAGGCTGGGAGCGTAGCACTCGCTCTCTACTCGGCACTGTTCTCCTACTCTGGCTGGGATACGCTCAACTTCGTCACGGAGGAAATTGTGAATCCGGAAAGGAATTTACCCCTAGCCATTGCCATCTCTATGCCGATTGTAACTATCATCTACCTGCTGACAAATGTGGCGTACTACTTGGTGCTGGACATACCTTCCTTCATGGCCAGTGATGCAGTCGCAGTGACTTTTGGAAATCAGGTTCTGGGACCCATTAGCTGGGTCATTCCCATTGCTGTGGCTATGTCGTGTTACGGAGGACTGAACGCCTCCATCATTGCTGCCTCCAGGTTGTTCTTCGTCGGGGCAAGAGAGGGCCACCTCCCAGACAGCCTGGCTCTGATCCATGCTAACCGCTACACTCCTGTCCCCGCACTACTCTTCAATGGTGTCATGGGACTGATCTTTTTGTGTGTGGAAGATGTATTCCTGCTAATCAATTACTTCAGCTTCAGCTACTGGCTGTATGTAGGATTATCTGTGGCGGGACTCATCTACCTTCGCTTcacacagccagacagacaCAGACCTGTGAAGcttacACTGCTCATTCCCTTCATCTATTGCTTGTGCAGTCTTTTCTTGGTCATCGTGCCCCTCTATAGTGACACAATCAATTCCCTCATAGGAGTAGCCATTGCACTGTCTGGTGTACCGGTGTACTACTTCTGCATTTACCTGCCTGAGGAGAAGAGGCCGAAATGGTTCAGTCAGCTCAATGCCGCCATCACCAAATACACCCAGATCGTGTGTTACTGCTGTCTAACTGACCTCGATGTGGAGCCAGAGAAGTTGGCTGAGAACAAGACTCAGTGATCTACGAAAACCAGCACACAGAATGAGTTCTCTACTTAAAGACACCATCGATTTTTGAATGTTTGAAGTGGACGTGAACGTTGGCACCATGGTGACTTTCTTAAAAGAACAATGATGTCCAGTGAGGTGCTGTAAAATTTGTACGTAtcagtcatttattttctgcatACACCATGTCTTCTTTCAACTTGTACTGTATGTTTGAAGTACTGTACCAAGAGTGACATGAAGAGAAAATGTAAtctgttttatctttattttttataagatTGTGATGACATTATGGTGCACTTTTGATAAATGTTTCTT
>XR_003404065.2
aatttattgtttACTCGGTAAACACTCTTCTAACCATTGCCATTGCTGGACTGAACGAGTTTAGATGAGTTAACAGAAAACTTAGTAAAATCTTAGCGTATAATCCAGAAGTTTAAAATTGAAACCATTTTGTAATTACGTAACTATAATGTTTACATCTTCAACAGTAAAATGATAATTTATAGTCGAGTGTGAGCCGCAACACTGTTACAGGAgcagggtctctctctctctctctcgctcgctcgctcgctcgctgCCTCTGTTTGACTCTCTCCCTCTCAAAGCACAGACgtccaaaaataaacaaggGAACTTGGGGAACTGCGTGTCCTCTGTGTAGAAAAACACTTTGCCGTCTGGGACTGCTACACAACACACGCTCTGGTGCTCAGCTGAGCCTCTGGATCTCTAAAGATAAAATCTGCATTATTCATCTGCACGGTTCTTCTCACCAACAGTTAACTCCTTCTACTGTCATTCATCATCGTTAGAGGATAAACTCTTGGACATGCGCCGAGTACTTTGCCCCTCATTTAGGGCAGACTCGGACCCAGACCTGAAAGCACCAGTGGGTCCTGATGGCCAGGCAGAGAAGATGGTGATGAGGAGGGAGATCTCTCTTGCCAGCGGGGTGTGCCTCATCGTGGGAAACATGATCGGCTCAGGGATCTTTGTCTCGCCCAAAGGCGTTCTCCTACACAGTGCATCTTATGGCCTGTCGCTGCTCATCTGGGCACTCGGGGGCTTGTTTTCTGTCTTCGGTGCCCTCTGCTATGCTGAGCTTGGCACCACCATTGGCAAGTCAGGTGCCAGCTACGCCTACATTCTGGAGGCCTTTGGTGGATTCCTGGCCTTCATCCGCCTATGGACTTCAATCCTGCTGGTGGAGCCAGCGAGCCAGGCTGTCATCTCGCTGACGTTTGCTAACTACCTGGTGGAGGCTCTGTACCCGACGTGCCAACCTCCATACGATGCTGTGAGAGTCATCGCTGCTGCCTGCATCTGTGTGCTGATCTTTATAAACTGTGCTTATGTGAAGTGGGGAACTCTGGTCCAGGATATCTTTACCTACACCAAGATCTTttccctcatcctcatcattgCAATTggcattataaaaataattcaagGAGAGACTCAGAACTTTGAGAACCCATTCGAGGGCTCCTCCATGGAGGCTGGGAGCGTAGCACTCGCTCTCTACTCGGCACTGTTCTCCTACTCTGGCTGGGATACGCTCAACTTCGTCACGGAGGAAATTGTGAATCCGGAAAGGAATTTACCCCTAGCCATTGCCATCTCTATGCCGATTGTAACTATCATCTACCTGCTGACAAATGTGGCGTACTACTTGGTGCTGGACATACCTTCCTTCATGGCCAGTGATGCAGTCGCAGTGACTTTTGGAAATCAGGTTCTGGGACCCATTAGCTGGGTCATTCCCATTGCTGTGGCTATGTCGTGTTACGGAGGACTGAACGCCTCCATCATTGCTGCCTCCAGGTTGTTCTTCGTCGGGGCAAGAGAGGGCCACCTCCCAGACAGCCTGGCTCTGATCCATGCTAACCGCTACACTCCTGTCCCCGCACTACTCTTCAATGGTGTCATGGGACTGATCTTTTTGTGTGTGGAAGATGTATTCCTGCTAATCAATTACTTCAGCTTCAGCTACTGGCTGTATGTAGGATTATCTGTGGCGGGACTCATCTACCTTCGCTTcacacagccagacagacaCAGACCTGTGAAGGAGTAGCCATTGCACTGTCTGGTGTACCGGTGTACTACTTCTGCATTTACCTGCCTGAGGAGAAGAGGCCGAAATGGTTCAGTCAGCTCAATGCCGCCATCACCAAATACACCCAG

Function

NR:

description
PREDICTED: Y+L amino acid transporter 2-like isoform X1

GO: NA

KEGG:

id description
K13780 SLC7A5, LAT1; solute carrier family 7 (L-type amino acid transporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937263.2 True 2028 mRNA 0.48 10 29564221 29575414
XR_003404065.2 False 1869 misc_RNA 0.49 10 29564602 29575727

Neighbor

gene id symbol gene type direction distance location
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding downstream 33540 29519091 ~ 29530681 (-)
LOC113540703 NA coding downstream 39160 29524989 ~ 29525061 (-)
LOC113540697 NA coding downstream 39534 29524509 ~ 29524687 (-)
LOC113540698 NA coding downstream 40309 29523723 ~ 29523912 (-)
LOC113540702 NA coding downstream 40755 29523394 ~ 29523466 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding upstream 971 29576698 ~ 29592827 (-)
LOC113539879 LOC108267234 coding upstream 54243 29629970 ~ 29666855 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding upstream 105517 29681244 ~ 29692555 (-)
si:ch211-13f8.1 LOC108267891 coding upstream 117651 29693378 ~ 29705682 (-)
cdc14aa LOC108267888,LOC108411489 coding upstream 156538 29732265 ~ 29748113 (-)
G73423 NA non-coding downstream 23865 29540095 ~ 29540356 (-)
G73327 NA non-coding downstream 243887 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 346063 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 349170 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 368054 29128055 ~ 29196167 (-)
G73439 NA non-coding upstream 31874 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 95460 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 135359 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 137166 29712893 ~ 29713446 (-)
G73459 LOC108267889 non-coding upstream 138272 29713999 ~ 29714410 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 392300 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 679256 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 772392 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 911796 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1327416 28236724 ~ 28236805 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 148861 29724588 ~ 29730857 (-)
G73619 blvra other upstream 443779 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1165800 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1197722 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1671333 31247060 ~ 31277249 (-)

Expression


Co-expression Network