nos1apb (LOC108267139)


Basic Information

Item Value
gene id nos1apb
gene name LOC108267139
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29813527 ~ 29825141 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937273.2
CATCACGAGGCGAGGAGAGGCTGCAACCATAAAACAGCTGGACGCAGTGAGCAGATGCACGACTGGCAGCTGCAGAGGATTTCTCTCTTCTGTTCATCAGccACCGGAGGCTTCCTGTGAAGGCTCGTATTCGGCTCCATATCACTTACGATAACACGCACGATGCCTGAGAAGACAAAATATAACCTGGTGGACGACAGTGATGACAGCTTCCAGTGTGGCATTGCGTTCCAGGTGAAGTTTATTGGCACTTTGGACATTGTGCGTCCACAAAGCAGGCTGGACATCCTGGCAGCCATGAGAAGGGTCCGGtatgagTTTAAAGTGAAGAACATCAAGAAGATGAAAGTCAGCCTTGTCGTAGCGGTGGATGGTGTCAAAGTGGTGttgcataagaaaaaaaagAAAAATGCATGCAGCTGGGATGAAAGTCATGTAACATTGGCACAGGATCCTATTTACAGAATATTCTATGTGTCCCATGACTCCCAAGACCTTAAAATCTTCAGTTATATTGCAAAAGATAAGAAGAGCAATGTGTTCCGATGCAACGTTTTCAAATCCAAGAGAAAGAGTCAGGCTATGAGAATTGTGCAGACAGTCGGACAGGCGTTTGAGGTTTGTCATAAACAGAGCCTGGACACTGTGGATGAATGGTTGGTTAAGTgcgaggaggagagaagagaggaggaggacaCTCCAGATGCTGATACCAACCCAGAAGAGATGATGCAGAAGACAGATGTGAAGGTCTCTGAAGATGCCGTGGTGGAAATAGAGCCGTCAGGACTGCTGTCTCCAGTCCCTGAGCGCCTGTCACTGAGCCACCGGGTCCAGCTCCTGAAGAAACAGCTCAAACAGCAGGAACAGAAGAGCCAAGCTGCTTCAGcacagGCCGCCCTGCTCCAGCAGCAGCTGTGTTTGGAGGCGCGGGCGAGGACAGAGGCTCAGGTTCGAGCTCAGCAGCTCCTGCAGCAGAATGGCGAGCTCCTGCAGCACCTCTCCATGCTGATCAAACACATCCAGGAGCTAGAGCTCCGCACACACTCATCCACCTCCACCATGGGATCTCAGGACAGCCTGTTGGAGATCGCTCTGAGAGACAATGTTCCTCGTTTCTCACCCTTGAAGAAGCCTAACGTGGTTCGTCTTGATCCATTCGACTTCTTTCCAGAGCCTTCGGACGGTGAGAAGAAGCCAGAGCAGGACCGGGATTCAGGCCAGGGTCCAGATGAAGAGCAAAGTGAGAGTTCTCCTACCGAGGCTCGCCTGTTCTGCACATTGGAGCTTCCTGGGTTCAGAGAATCGGGTATTGCCTCCGGATACGAGTCCAATACGGACGAGAGCGATGATAGGGATAGCTGGGGCCAATAAGAGATTGAGGATTGAGGCTCTGTATGCACTGTTGGAGACAAAGTTAGGCTCCAGATGTTTTAGAGTTATGAGAATGAACAAACATGTACATGCTATAATGtgccctttaaaaaaaatgatgaattcCAATATCGAAACCTGAGTGAGAATGATCAAGATGATGAGAGATGATCGAGAGGTTGAGGGCAGGAAGAAATTAGGAAGTAAATAAAGTTCTTTTATAACTCTTTAAACAAGACCCGCTTGCTCAGCTGTTGTCATAGAGACTTAAAGCACTGTGCTCGTCTGGCATCATCACAGTGTGACAGCAAACAGAACAAGAAGACAATGGATAATAGTCCTGTGATCATTTATAGTCTTTGGTCTGACTCTGCTGTTACTGTGATGTGAATATGCTGAGCTTCCATGATGTCTACAGTGGAGCTGTACCTGCACTGCTTGCACTGTGTGAGTTTTGTTCCGCTTGACTGTAAACATATGCCCTGCACATCTGGCATTTCTGCATCTGTATGGTATGAGATGCCAGTCGAACCCAAATTTGGCCAAAAACAGCACAGCTTTATTGTCATGTCCACAGGATCCATGGACAATGCAAGAAATCCTGGgccctataaaaaaaaaatgctaagaCTGGTTCAAGACACTGTAAAATGTTCCAGATCCCAGATTTCCTCTCTTTCTGGTTTGAGTCCATAATGTACAAAAATTCATATCAGTGTACCTTCAACCTGCACACAGGTGACCCGTTTAACGCCTGGGAATTGACATGATGTTTGTGCTGCATTGTGGGAATTATCTGCCATATTGtatgcaaaacttttttttttttttttttttcgggttTGGTTGTAACAGATAGCACCAAATGAGTGGCTTAAGGAGAATGCAAAAGCGCCAACATGTGCAAACTaaatgtctaaatcatcacagaCTAACCTCTAAAGACTGAAAATAGCTCACAAATTCCATttgtacataaacataaaccGTTTCATTTAAAGGTGCCACctgtaatatttaaaagcatttctaaAACCAATAACAGTCATAGAATTTTATAGATACCATCgaaaagctgtgatttgcagtatTGCTAGGTAATGGATCTGTCTTTGTTTCAGGTTTGTGTGTAGATTGTGTTTATATCTGAAGCAATGCTTCATAGCTCTAACACTCTTCCCTAAAAGACAACTCAAAAGGCATATGGAGCTTAACCAGAAGGGCGTGTCAGTAAGGGAAAGAGGATTCtgctttgtctgtttttattgcGGATGTAGTTCACCTTGCTgccagcaggaaaaaaaatcacaaacagcTCCTTGAAACGCTCCAGCTGATGTGTGTTGgtactgtatatctgtaaaCTTCTGGCAAATCCCGTCTGGTATTGCATGAGCGCAGATTTCATCTACTTCTCCTTACTGTCTTCTTCGACTTCTTCATGAGTAGTGTGTCCTGAGTTATTAGTACTCATACTAACTGTCATGTTTAGCTACAGCTCTGTTTGaggttgtgtttatttgtgacTCTCTCTATATGCTTTCAGATGCTCTCAGAGTGAGATTTATCAGCCTGTGAAGTGATTGAATTACATGGAAATGAATTATTAGTGAGAATATGtaatgagaaagagaggaaacacTTTTAGGATTAGAATTTTGccatctttccatctttcaATAGTGGCATTCTTCTTGTTTTGCTACACTAGAGTGACTAGAATGTAGTAAAAATCGTGATGGGTCTGAATGCAGAgtaatgatgtttaaaatgttttattaagagTGCAAATTGTTTTAACGCTATTAACAAATCCATACAATTTGAAAat

Function

NR:

description
PREDICTED: carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937273.2 True 3205 mRNA 0.44 11 29813527 29825141

Neighbor

gene id symbol gene type direction distance location
ddr2b LOC108267138 coding downstream 970 29797070 ~ 29812557 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding downstream 19385 29766208 ~ 29794142 (-)
cdc14aa LOC108267888,LOC108411489 coding downstream 65414 29732265 ~ 29748113 (-)
si:ch211-13f8.1 LOC108267891 coding downstream 107845 29693378 ~ 29705682 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding downstream 120972 29681244 ~ 29692555 (-)
rgs5b LOC108267191 coding upstream 8521 29833662 ~ 29835191 (-)
brinp3b LOC108267163 coding upstream 43450 29868591 ~ 29899526 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding upstream 78603 29903744 ~ 30014565 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding upstream 199928 30025069 ~ 30037066 (-)
LOC113540054 NA coding upstream 212267 30037408 ~ 30043011 (-)
G73485 NA non-coding downstream 19883 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 33395 29778555 ~ 29780132 (-)
G73444 NA non-coding downstream 47412 29765747 ~ 29766115 (-)
G73448 NA non-coding downstream 47895 29765124 ~ 29765632 (-)
G73479 NA non-coding downstream 49736 29763505 ~ 29763791 (-)
G73492 NA non-coding upstream 21533 29846674 ~ 29846891 (-)
G73607 NA non-coding upstream 104123 29929264 ~ 29929489 (-)
G73618 NA non-coding upstream 151530 29976671 ~ 30025036 (-)
G73652 NA non-coding upstream 270649 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 276299 30101440 ~ 30102870 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 82670 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 237800 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 641606 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 928562 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 1021698 28787614 ~ 28791829 (-)
G73619 blvra other upstream 194365 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 916386 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 948308 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1421919 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 2045377 31870518 ~ 31871874 (-)

Expression


Co-expression Network