klhl20 (klhl20,LOC106569069)


Basic Information

Item Value
gene id klhl20
gene name klhl20,LOC106569069
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24994877 ~ 25013306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937276.2
AATCCCAAATAGCTAGTAAGTCCCTACCTAGGAACACTACAGAGTGTATAAAATAACGACATCTACagcctatatagtgcactatttatgCATCACGGAGCTGTTTGGTCTTCTGCCGCACTCTTGTCGTCATTAAGGTATTACTCGCTTCAGGTTTAGACCCAAATTCTCTCTCTCGAGACGACTTAAAGAGCACTCTGGACCGCTTGAATGGACAAATAAgGGGCACCGGCGGGATGGACATCACGAGCCGTTGCACCCTGGGCGACCCCAACAAGCTGCCGGAGGGCGTGCCGCAGCCGGCCCGCATGCCCTATGTGTCAGACAAGCACCCGCGGCAAACTCTGGAGGTGATCAACTTGCTGCGTAAGCACCGCGAGCTGTGTGACGTCGTGCTGGTGGTAGGCGCCAAGAAGATCTACGCACACCGTGTCATTCTTTCAGCCTGCAGCCCCTACTTCAGGGCCATGTTCACTGGCGAGCTGGCCGAGAGCCGGCAGACTGAGGTGGTGATCCGCGACATCGACGAGCGCGCAATGGAGCTGCTCATCGACTTCGCCTACACCTCACAGGTGACCGTGGAGGAGGGAAATGTGCAGACGCTGCTGCCCGCCGCCTGCCTGCTGCAGCTGGCTGAAATCCAGGAGGCTTGCTGTGAGTTCCTTAAGCGCCAGCTCGACCCGTCCAACTGCCTGGGCATCCGGGCTTTTGCTGACACGCATTCATGCCGAGAGCTGTTGAGAATCGCTGACAAGTTCACCCAGCACAACTTTCAGGAGGTCATGGAGAGTGAAGAGTTCATGCTGCTCCCAGCCAATCAGCTGATCGACATCATTTCGAGTGACGAGCTAAATGTGCGCAGCGAGGAGCAGGTGTTTAATGCGGTCATGGCCTGGGTTAAATACAGCATCCAAGAGCGACGGCCTCAACTGCCTCAGgTCCTTCAGCATGTCCGCCTTCCTCTGCTGAGCCCAAAGTTCCTTGTGGGAACAGTGGGCTCAGATCCACTAATTAAGAGTGATGAGGAGTGTAGAGACCTGGTGGATGAAGCGAAGAACTATCTTCTGCTTCCTCAAGAACGCCCGCTCATGCAAGGACCTCGTACCCGACCCCGCAAACCCATTCGCTGTGGAGAGGTTTTGtttgctgTAGGGGGATGGTGCAGTGGTGATGCCATCTCTAGTGTAGAACGCTACGACCCCCAGACTAACGAGTGGCGCATGGTGGCGTCCATGAGCAAGCGGCGCTGCGGAGTCGGCGTCAGCGTCCTGGACGACCTGTTGTATGCTGTGGGCGGCCATGATGGCTCTTCTTACCTGAACAGTGTAGAGAGGTATGACCCTAAAACTAACCAGTGGAGCAGTGATGTGGCACCCACCAGCACATGCAGGACCAGTGTGGGTGTCGCTGTGTTGGGGGGTTACTTGTATGCAGTTGGTGGACAGGACGGAGTCTCGTGTCTGAACATAGTTGAAAGATATGACCCTAAAGAGAATAAGTGGACACGGGTGGCATCCATGAGTACGCGGCGTTTGGGGGTGGCAGTAGCTGTTCTGGGAGGATTCCTCTACGCAGTGGGAGGCTCAGACGGGACTTCTCCTTTAAATACAGTGGAGAGGTATAACCCTCAGGAAAACCGCTGGCACACAGTATCACCAATGGGCACACGGCGGAAACATCTGGGCTGCGCCGTTTACCAAGACATGATCTACTCAGTCGGAGGCCGCGACGACACCACAGAACTGAGCAGCGCTGAGAGATACAACCCGAGAACCAATCAGTGGTCTCCTGTGGTCGCCATGACGTCCAGACGGAGCGGGGTCGGTTTAGCGGTGGTGAATGGCCAGTTGATGGCAGTTGGTGGATTTGATGGCACTACTTACTTGAAGACAATAGAAGTCTATGATCCTGACGCTAACACATGGAGGCTTTACGGTGGAATGAACTACAGGAGATTAGGAGGAGGGGTTGGTGTCATTAAAATGACTCACTGTGAATCACATATATGGTAATACCCTCATCCACCCCCTCATAGATGCCTCATTATAGCTTGTGCCTCTCATTGAgacattaagaagaaaaaagactCCATTATTTAAGACTATTGCTTTACATCTCAAGACAATGAGATCACTAAGGAGAGGATGAACATCTGTCGCTCTCATGTGGAGCTGATCTGTGAAGACTTTCACATTCAGGGCTGGATTTCATCGCTCTTTTCATAGGACTTGCCCACAGCCAAAGGCTAGCTTCcatacgagagagagagagagacggagagagagtgagctCTGACGCTCACTGCAGCATTGCTCCTGTCTCAAACACaggaaaaaagtcacatttaaaGATACACTTCTCTGGAAGGATCTGTACTGCCTAgtatttgtgattttttgttttttttgttttgttttttgggagACGTGTCGTGGTAAGCTGATGCTGCGTGAGGTGGCGTCACGGTCTCATGCTCATATGGACAGTAGCTTGTCTGAATGGTGTTTTAATCTTATGAACTGGAtgcactgtgatttttttttttttttttcttcctttgtgCAGTTTCTTTTTTTGAGTTGTAAAACGAGCTTTGTTTTTCTACCTTGCCTCATCAGCCACGGATTCAGCAAAgcatgtttcttttctttttttttttttatagtggtGCTTATCAAAACAGTAGAATAAGAAATATGCGAGCCTTTGTTgaaggtgtgaatgaatgaaggcGCATGCAAGTCATTTTTCAAAAGCGGTTTCTACCATTTCAACACtatcacttttattttcttgtttactTTAATATCATATGATGCATCGGTCTGTGCACTTTAATCCAAGACAAGTTCAGTTTGGtcactgttctgtttttaacACAGTGAGACAATGtcgacattttttaaaaaaaaaagaagaagaatgttgGTGGATTTattatgcatttacattttgagTTTATGGTATGGATGCTGGGTGATTTTTCAGAGATGATAAACAAATGG

Function

symbol description
klhl20 Predicted to be involved in protein ubiquitination. Orthologous to human KLHL20 (kelch like family member 20).

NR:

description
PREDICTED: kelch-like protein 20

GO: NA

KEGG:

id description
K10457 KLHL20, KLEIP; kelch-like protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937276.2 True 3005 mRNA 0.49 12 24994877 25013306

Neighbor

gene id symbol gene type direction distance location
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 187473 24792295 ~ 24807404 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 397768 24587207 ~ 24597109 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 433599 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 516073 24476189 ~ 24478804 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 585580 24294636 ~ 24409297 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 8307 25021613 ~ 25047317 (+)
astn1 astn1 coding downstream 256916 25270222 ~ 25552839 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 630096 25643402 ~ 25664410 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 937848 25951154 ~ 25953899 (+)
cacybp cacybp,LOC100304883 coding downstream 941650 25954956 ~ 25964158 (+)
LOC113540553 NA non-coding upstream 145390 24839221 ~ 24849487 (+)
G70204 NA non-coding upstream 244964 24681981 ~ 24749913 (+)
G70142 NA non-coding upstream 408970 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 410038 24584614 ~ 24584839 (+)
G70139 NA non-coding upstream 411501 24583176 ~ 24583376 (+)
LOC117597084 NA non-coding downstream 314912 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 543531 25556837 ~ 25557761 (+)
G70763 LOC107732307 non-coding downstream 545121 25558427 ~ 25561346 (+)
G70778 NA non-coding downstream 572020 25585326 ~ 25585534 (+)
G70780 NA non-coding downstream 572947 25586253 ~ 25586458 (+)
kif2c kif2c other upstream 123614 24859026 ~ 24871263 (+)
G69971 NA other upstream 884988 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 888654 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1674534 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2342430 22649810 ~ 22652447 (+)
tnr tnr other downstream 694521 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 883711 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1202758 26216064 ~ 26224038 (+)
G71385 NA other downstream 1215458 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 1274984 26288290 ~ 26292784 (+)

Expression


Co-expression Network