wrap53 (wrap53)


Basic Information

Item Value
gene id wrap53
gene name wrap53
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12777177 ~ 12788225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937280.2
GTTCCAAATAACGAAAATCTCGCGAGATCTGGACACTTTTGTTTCTGATAATGGCGGCGtcctgtgtgtgtaaacacgCAGCATGGGATGTGATTATTATTGGCTACAGTTGAAGTTTTATTGCCAGAAGCGCTGTGTTTATGCATGTTAAATAAGTGGAAGGAGGAAATTTAACCGAAGGACATCAAGGCGCGACAAATTTTGGAACAGGATTCAGTTTTTTGCACCGTCCCCAGAAACATTACTCTGATGGCCCAAACTTCTGTCTGAGAACGATAGTGACACACAAACCAAACGCCTTCTGAAGgtctttcccacacacacacttctagaCTCAGAGACTGAGAGTGGTGTGAATATGTCCGATCCTGGACCCTGCAGTGAGGCGGTTAGTTTAGGAGGAACAGGACAGGAGGCAGAAGCTGATGGAGATCCACCTTGTGCTGAGCCTCCTCCACCCTGCACTGAAGAGGATGCTCAGCTTACTGCCAAACAGCCACCTCTTGGTGAAGGGATGGAGATAGACTTTGGTCGGCCTGATACATGCACTGAGACACTAACAGGAGTTAGTGAGGATCAGGATGCTGGTGGAATCCCAGACAAAGTGTCAGAGGATGCAGGAGAGAGACCTGAAGAATTGACACAAAGAGATGAAGAGTGGCAAGAAACTGAAGAGACAGTCGCAGTGACTGAGAGGAAAGAGGATGAAGGAGGAGATGAGcaggaaaacactgaaacagagCCCACTGAGTATCAGCGTCAGTACCTGGTCCTGGATTTCAGTCAGAACCTCCAGATGCTGACAGGGTCCTGggcagaatacacacacactccggagAACTACCTCAGAGGCTGCAAATGgGCTCCAGATGGTTCCTGTATCCTCTCGAACAGTGCAGATAATGTGCTGCGTGTGTATAATCTCCCGCCCGAGCTCTACAGCAGCAGCTGGGATCTGCTCTCAGAGATGAGTCCTGTGCTGAGGATGACTGAAGGAGACACCATCTATGACTACTGCTGGTTTCCAAAGATGAGCTCTTTGGATCCAGACACCTGCTTTATCGCTAGCAGTAGCCGTGACAACCCAGTCCACATATGGGACGCTTTCTATGGTAACCTCTGCGCAACCTTTCGACCCTACAACCACCTGGATGAGCTGACGGCAGCCTATTCGTTGTGTTTCTCTCCGGATGGCTCGCAGCTCTACTGCGGATTTGATAAGACAGTCAGGGTGTTCTACACAGAGCGCCCTGGTCGGGATTGTGAGCAGAGGCCTACTGTCGtgaagaaaCAGGGCCAGAGTGGTATAATCTCATGCATGGCATTTAGTCCATCTCAGCCAGTGTACGCCTGCGGTTCATATTCACGAACAGTGGGTCTATACTCGTGTGAGGATGGATCAATGTTGGCTCTCTTGCCTCAACGCCACCATGGTGGAGTCACACACCTGCTTTTCTCCCCGGATGGCAACCACCTGTACACAGGCGCCCGCAAGGATCCAGAGATCCTGTGTTGGGATCTGAGAGATCCGGGTCAGGTTCTGTTCTCACTACCCAGAACTGTGAGCACTAACCAGCGCATTTACTTCGACCTAGATCCGTCTGGCCGGTACCTCGTGAGTGGAGACACTGAGGGAGTGATGTCAGTATGGGACACATTGACAGCCCCTCCTGATGGTAATGAAGAGGTGCTGAGGCCCGTGCTCCAGTTTCAGGCTCACACAGACTGCACTAATGGCATCAGTCTTCATCCTTTTATGCCATTAGTGGCGTCCTGCAGCGGTCAGCGTCAGTTCCCGTGGCCTGGAGACAGCGATGACTCAGACTTAGAGGAGGACAGGATGATGACATCCAGCGACATCAGAGAGGACAATGGGCTCGTGCTGTGGTGGGCGGGGCCACTGGGTTCAACCAGTGAACAGGGGCAGGAAGAAGGGAGCACGGCTTGAGAACTTATCATCTGTAACTGTTCCATTTTTCGTGAACTGGACCAAGATTTACGAACTGCCTGGTTGCAGTAACGACTGTGACAGGGATTTATATATTCGTGTATAATGTCAGAGACAGTCTTACAAACAATGAGCTAAAGACTTTATTGATTATAGAGAAGCTTGTAATGTGTTTTGAGTGAGGTCTTTCACAGATTCTGATGGCAGAGGAAAAGGATTTAAAAGCTcagttgatttttaaaaaaagcaaaggcCTAAGCCAGGCAGTGAACTTTTTCAATCCATTAGTGAATTAGTTCAGTATAATGTGGCCAAggactttaaattttttttttttttttttcattaaggGAATTGGATTCTCTTTAGTGCTTGTGTTGCACTGATCGCTCCCCAGTAGGAAATTTACTTCGTTTGTTTTTTAACTTGCAGTATTTACTGATTGTGGCAACTGAGAAAAGCCTTTCGCTCTTTTGAGAAATTGAAAAAGACATTTCCTTGAATACGAAGTTGCTTAAATGGTCATGTTGGAGATAAGAATGGAGGCACACACTGAATCATTGCTTGGCATTCTGTGTACTTTTTCCTCCACTGCCCTCCCAATCTAATTCTTCTGCTCCGGTGAGACGCTGCTTCATTTATTACATCTTCTGTGTGCAGTGCTGCCGTGTACATctgtaaatcatttttttagtCAATGATAACATGAGTGTAAGAACCAGCTTTTTCTTTGCTCTACAACCCCAGTGAGTCTGGATATCCACACAAATTTGTACATGTTTTGGGTGACAATTGGGAATGTGGGTATGACTGTCTTTTGTAGGATATGCAAGTGGTGGATCTGAATCTAATTAACGTAGGCTATTTACAGGGAGCTATTTATAGATTGTAAATGACTTTATAAaattctgtctcttgaagtgcCTGATCACTGAAGGTGcagtttgacatttttaaatgtgcttcgAGATCTACAATGATCATGTCTCTTCAAagatacttttaaaaaaactgatgcATAATATTGTCAGGCAATTAATCTTCACGAGTTTGAGGTTTGTGGATAAATGAAATAGGCTCTACCTCCAGCTGGAACAGAGCTGCTCAGGATTACTAGAGATGCATCAATACCTATCCTAGTACCAAAAACACATACTTGGtctgtaataaagaaaaaaacctgtATCAGTGCATTACTACTGTATACAGAA

Function

symbol description
wrap53 Predicted to enable RNA binding activity. Predicted to be involved in Cajal body organization. Predicted to be active in Cajal body. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 3; colorectal cancer; head and neck squamous cell carcinoma; lung non-small cell carcinoma; and ovarian cancer. Orthologous to human WRAP53 (WD repeat containing antisense to TP53).

NR:

description
telomerase Cajal body protein 1

GO: NA

KEGG:

id description
K23314 WRAP53, TCAB1; telomerase Cajal body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937280.2 True 3159 mRNA 0.46 11 12777177 12788225

Neighbor

gene id symbol gene type direction distance location
gigyf1a gigyf1 coding upstream 9273 12742257 ~ 12767904 (+)
epoa epo coding upstream 43699 12718253 ~ 12733478 (+)
LOC113540507 LOC108267598 coding upstream 60445 12712841 ~ 12716732 (+)
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding upstream 106636 12508874 ~ 12670541 (+)
tifa tifa,LOC100304890 coding upstream 570302 12198342 ~ 12206875 (+)
efnb3b efnb3,efnb3b,LOC107597046,LOC106577756 coding downstream 7716 12795941 ~ 12861217 (+)
serpinh2 LOC108267141,LOC108412061 coding downstream 162844 12951069 ~ 12976437 (+)
dnah2 dnah2 coding downstream 192624 12980849 ~ 13115167 (+)
kdm6ba kdm6b,LOC106608825 coding downstream 327991 13116216 ~ 13198549 (+)
trip6 trip6,LOC103041331 coding downstream 444409 13232634 ~ 13242400 (+)
LOC113540557 NA non-coding upstream 4355 12768585 ~ 12772822 (+)
G63242 NA non-coding upstream 418929 12357832 ~ 12358248 (+)
G63241 NA non-coding upstream 419496 12355550 ~ 12357681 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding upstream 527389 12248663 ~ 12249788 (+)
G63061 NA non-coding upstream 772954 12003990 ~ 12004223 (+)
G63547 NA non-coding downstream 13669 12801894 ~ 12834330 (+)
LOC117596991 NA non-coding downstream 134645 12922870 ~ 12926987 (+)
G63685 NA non-coding downstream 331243 13119468 ~ 13119677 (+)
G63696 NA non-coding downstream 347434 13135659 ~ 13135860 (+)
G63666 NA non-coding downstream 410782 13199007 ~ 13199862 (+)
si:dkey-112a7.4 LOC108268066 other upstream 482044 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1071841 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1171947 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2113766 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 2281707 10495398 ~ 10495470 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 418432 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 487237 13275462 ~ 13285834 (+)
G63903 NA other downstream 630152 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 680327 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 770398 13558623 ~ 13562266 (+)

Expression


Co-expression Network