imp3 (imp3,LOC107671714)


Basic Information

Item Value
gene id imp3
gene name imp3,LOC107671714
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27460268 ~ 27466505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937314.2
ATACAATACGTACTGCGGGAAAACGTGCGCGCGAGGGGTCGTGACTGTCCATCaggttggggttttttttagagCCGGTTTATAAAGACTTTAAATTTGTGTGGGGGAAAATGGTACGTAAATTAAGATTTCACGAGCAGAAGCTCTTAAAGAAAGTAGATTTTATTAACTGGGAAGTGGACAACAATCTGCACGAGGTGAAAGTGTTGCGGAAATACCGCATCGAGAAGAGAGAAGACTACACCAAGTACAACAAGCTGAGTCGCAGCATCCGAGAGCTGGCCCAGAAAATCCGTGACCTGGACGAGAAGGACGGTTTCAGAGCTCAGTGCACGGCACAGCTGCTGGAGAAACTCTACAGCGTGGGCCTGATCCCAGCCAAACAGAGTCTGGCTCTCGCAAATAACGTCACCGCGTCATCCTTCTGCAGGAGGCGGTTGCCGTGGGTGATGCTGAAACTGCGCATGGCTCAGAACATGAAGGACGCCATCACGTTCATCGAACAGGGACATATTCGTGTCGGCCCTGAGATCATCACAGATCCTGCATTTCTGGTCACAAGGAACATGGAGGACTTTGTGACCTGGGTGGACTCGTCCAAGATCAAGCAACACGTCATGAACTACAATGAGGAGCGCGATGACTTTGATCTCGTGGTTTAAAGCTGCTGTAGTGATTTTCAGCCATCCGGAGAGCCAGAGCAGGGAATCGGGAGCTGCTCGGGATCTACACTCAGATGAACAACCCGGAGAACAAGCGAACACGTCATCAACACATTTCTGCTAAGAAacgtgtttacacacacacatgcgtgaACAGGAGAGTGCTAGATTGAGAGCTTTTACACCCTGGTATTGTGTTGAGtggaaaatatttattagagaaggataaaaatgtaaatgttttcatggacATCAAAAGTTTATACAGTTTGTAATACAGGTTTTCTATCTGATAtgaacatcattttttttttttttttttttttttttttttttaacacatcagaatattttattttttcacataatACATTATTTCAGGTAACCATTATTGTTCAGTTTAacgtcatttttaaataatgtgatattGAAAGAAAAAGGTGTATCCTGAAAACCGTGTAAATTTAAATACTACCGCACAAACGAGAACAAAATGCAATACACAATAGGTCACATCACTTCTGATCATAGAGAACTGTCCATCATCATAATATTGCGTACTGAACATCGCTTTATGTATCAGTCCATCAGCTAGCAATCTAATTAGAGATCAGCACAGAGAGTTGGTTCGTAAAACTCGTTTTAATGGAATAGGGACCAAACGTAGAGCTACATTTCAAACAAGTCATTGCTAACACAATACAGAAAGATCAATAACAtcttaatttgcataaataattaaataaaatacttcaagTGTTGCCAGAAGCGGTGATCTGCGGGGTCCAGGCACCTTTCGAAAGTAGGCTATATTGCATACGACATTAAAAAGGCCACAGTTTAGTGACGATAGTTCAATGCTAACCctgtgaaatgcctgctgaaatttGATTGGCTGAAGGTGGCCATATGTTTTTAGTGTAATCAAGTCATCATTAGAAACTCACTCACAGATTAGCGCAAAGATGAAGTACACTAAGTCTCAGCTCTGtgaaaacatacaaatatgCATTCCTTGAGTTGCCTTTTAAAGAAAAGGGGTGGAGCTtgtttcagggccagaaaaatctATATAGTGCCTTATATGAAGAACTGAGCCAAATGATcagaatgtaaatattaaaactccCGGTGTTTCTACAGTGTCTATAGAAGGGGAAGGGTACAAGTGTTACCCATTGTAGAAACGCtttcaaacatcacacacactgcaactttgactaaataaaaattgattCAGGGATCATTTTCACCCAAAACATCAAA

Function

symbol description
imp3 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

NR:

description
U3 small nucleolar ribonucleoprotein protein IMP3

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937314.2 True 1928 mRNA 0.41 7 27460268 27466505

Neighbor

gene id symbol gene type direction distance location
fam78ba LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240 coding upstream 13020 27441509 ~ 27447248 (+)
bcl6ab LOC108268038 coding upstream 33574 27421285 ~ 27426694 (+)
tctex1d1 tctex1d1 coding upstream 47488 27410223 ~ 27412780 (+)
pde4bb pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365 coding upstream 89237 27325751 ~ 27371031 (+)
LOC113540484 leprot,LOC108430744 coding upstream 142256 27313077 ~ 27318012 (+)
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding downstream 1543 27468048 ~ 27477673 (+)
trnat-ugu_5 NA coding downstream 22748 27489253 ~ 27489325 (+)
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding downstream 29343 27495848 ~ 27508199 (+)
si:ch211-252f13.5 LOC108267682 coding downstream 43345 27509850 ~ 27517204 (+)
ap2m1a ap2m1,LOC108267679,LOC108430755 coding downstream 68171 27534676 ~ 27546129 (+)
G72012 NA non-coding upstream 71 27459670 ~ 27460197 (+)
G72005 NA non-coding upstream 31046 27428419 ~ 27429222 (+)
G71980 NA non-coding upstream 79196 27380848 ~ 27381072 (+)
G71977 NA non-coding upstream 88590 27371473 ~ 27371678 (+)
G71942 NA non-coding upstream 164904 27293356 ~ 27295364 (+)
LOC113540179 NA non-coding downstream 17315 27483820 ~ 27487711 (+)
G72118 NA non-coding downstream 86622 27553127 ~ 27555706 (+)
LOC113540592 NA non-coding downstream 89580 27556085 ~ 27559427 (+)
LOC113540695 NA non-coding downstream 90012 27556517 ~ 27556648 (+)
LOC113540696 NA non-coding downstream 91260 27557765 ~ 27557902 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 53870 27384807 ~ 27406398 (+)
gng7 NA other upstream 578798 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1084442 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1167484 26288290 ~ 26292784 (+)
G71385 NA other upstream 1231077 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 836346 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 849899 28316404 ~ 28338173 (+)
gng5 NA other downstream 1292040 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1326342 28792847 ~ 28797159 (+)
G72873 NA other downstream 1407851 28874356 ~ 28912104 (+)

Expression


Co-expression Network