LOC113540681


Basic Information

Item Value
gene id LOC113540681
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27030740 ~ 27038359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937317.2
CGCCCTCACAGTTTAAAAAGACATACCCATCTTAGCATCAACACACCCTACAACGCATCTTATTCAGAGCATACAAAATCATCCATCTTATCATTAcagAGATGGAGGCCAGACTGATTGCggtggttttgtttgtttgctctgtttGTCATTTCACTGAAGCCCAGCTACCGGCACCAACAGCACTCAAtACCACCATCACTCGTACCACTTGTGGCAGCTCTAAGCTGTGTGTGTCGACTCCGGGTAATTGCGATCCTTCAGGAAACTCCAGCTGTTTTTTCAGCTCTACTCAGCTCAGTAGTACAGTACTGACTGTGGAAATCTCCGGCAGTACTTCAGGATACGTGGCACTGGGACTCATAGCCACTACCAACCTAACCCAGCCACTAAATCAGggagtcagtgctgtgtttgtctgcggcaacaacaacaacagtttaTTTTTCCAGAGAGCTACTCAAAATGGCACACAGTTGACTTCTGTTGATACGagcacCATAAATATAACTAGTATTCAGGGTTCAGTAATGGCAAACCAGAGTCTTGTTCAGTGTACCTTCAACATCACCTTCAATTCTACTTTCACTCAGCTGCCTTTCAACGTCACTATCCTTAATGGAACCACAAATGGAACAGCCCTGGGAAATCTGACTACAATATTTAGCTCCGGACCATTAGACCTGGCAAATCCCAAGAGCAATATTCCAGTGGTAGTGCTCAACATCACGCGTGACGGATGTGGCAGCTCTAAGCTGTGTTTCTCAAACGCATCTGGTTGCAATCCTGCAGGAAACTCCAGCTGCTTTTTCAGCTCAGTTCAAACGAAAAGTCAAAATTTCTCCTTTGAGCTCAGTGGCACGAAAGCGGGATATGTGGCACTGGGACTGATGAAACAGaactctACTGTTGTGTTTATCTGCGGCAATGACACCACTGGCGGCAATTTCTTCTTTCAAACTGCTATTAAAAATGGCACAAGTCTGACCCTTACAAATGTGacCACTGTATACAACAATCAAGGTGTAGTATCAAAAAACCAGACTCTTATTCAGTGTATCttcaacaccaccaccactttGAACTTCAGCACCAAAGCTGATGACACTAAGTACCAAGTCACCATCATGAGTGGAACCACCAACGGAATTCAACTGGGAGATCCAGCTGTACTATATGACTCCAAAACGGCAATAGACCTGTCTGATCCTACTGCCCTGAATCCAAGCAGCAGCAGTGCTGTAAGCCTCTGCACTAATGtgTTGGCTGTGATGCTCAGCGCTCTGACTCTCCGCCTCCTTATAAAACCCTGCCTTGTTACTTTTAATATAATTCTCAGAGTCTATAAATGTGTGCTAGAGTAATAGGCTGATTGGTgcctgtgtgtttgtacatATATGAAGCTATACTTAATTGGCTGAACATGAGAACACATCTGTGATATGTAATTGtcacttcattatttttttaacagtcaaAATAAGATGTTAATTTACACTCCCATACACATTCTACttttacatataatttattCAGAGAGCAAATGCACTGAATAGAGTCTAGTTTATGATcattttagtttatatttttgttttagataATACATCTGGGTTATTGTAGGTTGTTTCcctctaaaacatttctatttgtttttctcttttgttgaTTGCTATCACattaaaagtagaaaaatatCTAA
>XM_034303201.1
CGCCCTCACAGTTTAAAAAGACATACCCATCTTAGCATCAACACACCCTACAACGCATCTTATTCAGAGCATACAAAATCATCCATCTTATCATTAcagAGATGGAGGCCAGACTGATTGCggtggttttgtttgtttgctctgtttGTCATTTCACTGAAGCCCAGCTACCGGCACCAACAGCACTCAAtACCACCATCACTCGTACCACTTGTGGCAGCTCTAAGCTGTGTGTGTCGACTCCGGGTAATTGCGATCCTTCAGGAAACTCCAGCTGTTTTTTCAGCTCTACTCAGCTCAGTAGTACAGTACTGACTGTGGAAATCTCCGGCAGTACTTCAGGATACGTGGCACTGGGACTCATAGCCACTACCAACCTAACCCAGCCACTAAATCAGggagtcagtgctgtgtttgtctgcggcaacaacaacaacagtttaTTTTTCCAGAGAGCTACTCAAAATGGCACACAGTTGACTTCTGTTGATACGagcacCATAAATATAACTAGTATTCAGGGTTCAGTAATGGCAAACCAGAGTCTTGTTCAGTGTACCTTCAACATCACCTTCAATTCTACTTTCACTCAGCTGCCTTTCAACGTCACTATCCTTAATGGAACCACAAATGGAACAGCCCTGGGAAATCTGACTACAATATTTAGCTCCGGACCATTAGACCTGGCAAATCCCAAGAGCAATATTCCAGTGCTCAACATCACGCGTGACGGATGTGGCAGCTCTAAGCTGTGTTTCTCAAACGCATCTGGTTGCAATCCTGCAGGAAACTCCAGCTGCTTTTTCAGCTCAGTTCAAACGAAAAGTCAAAATTTCTCCTTTGAGCTCAGTGGCACGAAAGCGGGATATGTGGCACTGGGACTGATGAAACAGaactctACTGTTGTGTTTATCTGCGGCAATGACACCACTGGCGGCAATTTCTTCTTTCAAACTGCTATTAAAAATGGCACAAGTCTGACCCTTACAAATGTGacCACTGTATACAACAATCAAGGTGTAGTATCAAAAAACCAGACTCTTATTCAGTGTATCttcaacaccaccaccactttGAACTTCAGCACCAAAGCTGATGACACTAAGTACCAAGTCACCATCATGAGTGGAACCACCAACGGAATTCAACTGGGAGATCCAGCTGTACTATATGACTCCAAAACGGCAATAGACCTGTCTGATCCTACTGCCCTGAATCCAAGCAGCAGCAGTGCTGTAAGCCTCTGCACTAATGtgTTGGCTGTGATGCTCAGCGCTCTGACTCTCCGCCTCCTTATAAAACCCTGCCTTGTTACTTTTAATATAATTCTCAGAGTCTATAAATGTGTGCTAGAGTAATAGGCTGATTGGTgcctgtgtgtttgtacatATATGAAGCTATACTTAATTGGCTGAACATGAGAACACATCTGTGATATGTAATTGtcacttcattatttttttaacagtcaaAATAAGATGTTAATTTACACTCCCATACACATTCTACttttacatataatttattCAGAGAGCAAATGCACTGAATAGAGTCTAGTTTATGATcattttagtttatatttttgttttagataATACATCTGGGTTATTGTAGGTTGTTTCcctctaaaacatttctatttgtttttctcttttgttgaTTGCTATCACattaaaagtagaaaaatatCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937317.2 True 1699 mRNA 0.42 11 27030740 27038359
XM_034303201.1 False 1693 mRNA 0.42 11 27030740 27038359

Neighbor

gene id symbol gene type direction distance location
LOC113540685 LOC108267717 coding upstream 17095 26983741 ~ 27013645 (+)
LOC113539948 NA coding upstream 78883 26941327 ~ 26951857 (+)
gpr160 gpr160 coding upstream 128374 26900847 ~ 26902366 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding upstream 165225 26857531 ~ 26865515 (+)
elavl1a elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423 coding upstream 176591 26846891 ~ 26854149 (+)
LOC113540738 NA coding downstream 74789 27113148 ~ 27113254 (+)
ebna1bp2 ebna1bp2 coding downstream 105705 27144064 ~ 27151124 (+)
LOC113540389 LOC108267490 coding downstream 135702 27174061 ~ 27237097 (+)
LOC113539951 LOC108267487 coding downstream 227211 27265570 ~ 27270794 (+)
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding downstream 235813 27274172 ~ 27286654 (+)
G71557 NA non-coding upstream 174135 26808057 ~ 26856605 (+)
G71550 NA non-coding upstream 244180 26784572 ~ 26786560 (+)
G71519 NA non-coding upstream 362612 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 479714 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 566426 26464011 ~ 26464314 (+)
G71819 NA non-coding downstream 4344 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 35482 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 157642 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 178993 27217352 ~ 27217839 (+)
G71869 NA non-coding downstream 179868 27218227 ~ 27218455 (+)
gng7 NA other upstream 149270 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 654914 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 737956 26288290 ~ 26292784 (+)
G71385 NA other upstream 801549 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 806702 26216064 ~ 26224038 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 346448 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1264492 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1278045 28316404 ~ 28338173 (+)
gng5 NA other downstream 1720186 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1754488 28792847 ~ 28797159 (+)

Expression


Co-expression Network