si:dkey-19b23.8 (LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161)


Basic Information

Item Value
gene id si:dkey-19b23.8
gene name LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16460591 ~ 16465228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937342.2
TGGACGCGCGTTCCGTTCTGCATACTGAGGTGAAGTCTGGAGGAAAGGGAGAAGGAGCATGTTTCAGTGTGTGCTGGAAGGCTTCACAGCGCTGAGAAAGTCCACCAAGTTATTAGCTCTTAACTAAAACAAAATAGTACGTCAAGGCACTTTTTGAAATCGCTATCAACACCGGtattttgggcttttttttctttttttaaaaaacttaaacCAGTGACTGCTTTGTAAATGTGAGAAGGCAACTTAACGGCGATACTGAGAGGAAaaacttttcccttttttccttcGTACGGACACGGAAACGTAGAAAGAGCGGATGATagATCCTGGAGGTAAATCCTAACACTCTGTTCTGTGACGGTTACTGGAAAAAGGGAAGAAGGACCCCTCTTCTCCTAAAAGCATCTGTCACATTCAGGCCTCTCCCAATATGTCTCTGGCCTCCTTCCACTTGATGCAGGCCCTGAAGAACTCTCCTGCAGCCCTGCGCAGACACTTTAAACGGGACCGCACAGAGAGTCTTTCCCATGGGGACCCCATATTCAAAGTGCACTATCTAGGCACCAAGAAGATCTTCTCCCTAGACCTGGAGCAGGCTGAGGAAGCCATTAACCGGCTCCTGGATGGTGCTCCTGGAAAGTTGTCCAAAGACCATGCTTTGGTGGTGCGGCCGCGATATGTGGAAGTGAAAGAGTTGAGCACAGGGAGGCAGCTAACCAAGACCTACCTGCATGACATTGCTTACTGCGCATCACACACGGCCCATCCCAACGTGTTCCTCTATATCTGCAGGCAACCTGGTCAGCAGCTGCAGTGTAGGGTGTTCTGGTGTAGTCGTGTGGAAAGGGCAAAGGATATGACGGCCTGCCTGGCAAACTCATTTCAGAGAGCACTAAATGACTGGCAAGATGGCTGTGCTACACTGCCAAAGGCAGAGGGCATCGCGAATAAGGATGAGGCTGACATCACCCCTGCTGCTGCCGCCAAAGGATTGACACTGCCAGCCAGTTTGGGGAAAGTCCGTTGGAAGAAGAAGGGCTCAATTTCCCGCAGTCCTCTGAGAGCCATCACCAGGCGCGGCTCAGCCAGTGAAAACTGGCCATGAGATTCCCAGCTACTGGACCTCTTGACCCCTATGGGATCCTACCAACAAGAAGGCACTTTCTCTCCATTCCCACCATCCCAACAAAGTGACAGATGACAATGGCTGGACCTGTCATAGCTTGACTCCAACAAACCTTTCTGGCATTGAAAGTACAGTTTTTACAGACTGGTGTTAGTTTGGACTGTTGCCACAGTTGCTGTCCTTGCTCCTTTAGGGCAAAGACACTGATGACTGACAAGGTGGGGTGAGCCAATAGTTCATAGATTATATGctggtcatttttatttcatgtattgCTTGTTTAATTGATAGCAGTATTGTTTGTATTTTCATCTCAAGACTTAAGGCCTTTAAAGACTTTTATGCAAGTACATGcagattaatatatatattaccaaAGTAAAACTGACCTAACCAGTGGCTGAAAGTAAGGAGGTTCTTTTGATTAggattattaatacattttttcccctctaaatACAATACGCTTGGCTGGTGGGAAGAAACATCGAAACCAGGAATGAGCCCTTGTGTTAGGCATGTTGCATCAGGGATTTGTGAAATAACAGGGAGGATGCAGGAACCGCAGTGTTGCAATGGAAGTTCTATCCCTATTACCACCCAAAACCGCAGTTGCAAACCACCACAATTACAAGTTACACAAAATTTCACATATACTTTTGGTGCAGTTTCTAACCAGAGGAAGAAAGCCACACATTTAAACCTGTATTCATCTTGTATTCTTTTAACTGCTTTAGAATATCCACATTGAGATTAGACTTGATCTTCCAGAGTTTTTCCATCATTTCATTTGCCACTAACCATAAAGTAGGGTAATAAGCCAAGAGAAAATTTCCAAAAGAAAATAAGTAGCAcagtgcatgtttgtgtgtgcactgagtGAAAGAACACAATGTGCCCTGTGCGGTCTGTGTAGGATTCATGCCGTGCACCTGCATTCCAATAGGGCCATTCTGAACTCCTTTATGTTCCTTCCTATCTTCAGTCTACTTTCTGCCATCAGGACTGCAGATTTTGAAAATcaaattttaccttttttttttttttttttagcatgttctTGTTAAGCTAGTGACATCAAAATgctaatttgtgtgtgcattttagcATTAAGAGCAACAGTCGTGTATATGTTTGGCTTAGTAGCATAAGACAAGTATGTTAAACAGGATTAAATGCTACAGATTTGACTGCTGTACATGACCTTGCTAGTCCATACGTTGCTATTTTACAGTCAATATTGTTAATACATATTCTAATTGGAAGTATCTGCATGTTTAATGTTGACCTACAGTATCTTAACATCCAGGCAGTTGGCTCAATTATCTTTTGGATATTTTATCCTCATTGGTTTTAATCTAATACAAGGACACCAAACCTGCCTCCAGGATCTGAGTGTCTGCTCAAgggtttttattaatgtctaatgaatgtgcatgtttttgttttatattttttgtgtacatatttatatatatgtattttcaaaaattaaacttttataCAGTAATA

Function

NR:

description
uncharacterized protein LOC110500571 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937342.2 True 2641 mRNA 0.43 3 16460591 16465228

Neighbor

gene id symbol gene type direction distance location
chd3 chd3,LOC107738011 coding upstream 41661 16371997 ~ 16418930 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding upstream 94400 16356241 ~ 16366191 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding upstream 104628 16352761 ~ 16355963 (+)
fis1 fis1,LOC108434607 coding upstream 111190 16343344 ~ 16349401 (+)
mus81 mus81 coding upstream 150434 16299941 ~ 16310157 (+)
zpax4 LOC108268120 coding downstream 5032 16470260 ~ 16490483 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding downstream 140468 16605696 ~ 16648129 (+)
cskmt mettl12 coding downstream 188593 16653821 ~ 16655884 (+)
krcp LOC108267668,LOC108434626 coding downstream 204229 16669457 ~ 16674227 (+)
mark2b mark2 coding downstream 210207 16675435 ~ 16715097 (+)
G65495 NA non-coding upstream 17691 16431945 ~ 16442900 (+)
G65395 NA non-coding upstream 29905 16430461 ~ 16430686 (+)
G65382 NA non-coding upstream 68228 16392129 ~ 16392363 (+)
G65335 znf638 non-coding upstream 229476 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 397130 16062088 ~ 16063461 (+)
G65542 NA non-coding downstream 49409 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 104459 16569687 ~ 16577737 (+)
G65601 NA non-coding downstream 127219 16592447 ~ 16594457 (+)
G65643 NA non-coding downstream 211301 16676529 ~ 16677366 (+)
G65644 NA non-coding downstream 258667 16723895 ~ 16729352 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 89634 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 141425 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 420607 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1801655 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2191251 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 870269 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1144264 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1534930 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1648205 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1732084 18197312 ~ 18208564 (+)

Expression


Co-expression Network