mycb (LOC108268289)


Basic Information

Item Value
gene id mycb
gene name LOC108268289
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23648271 ~ 23650633 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937348.2
GCCGGCTAGGGGGCGGAGGGTTTGTGTGTTGAATGGTGACCGGCAGCAACAGCTCACAGCGCGCGCGCAGGCTGTAGTGCTTCAAGATAAAGTTCGGCAGAAACCGGTGAACTTTAAAACCTGGGATTATTTTCACTCACCAGGGAAGCTGTGTGAACATATATTTTCGTGTGTGTCCTCCTGCTACGTCATCATGCCGCTGAACGTGGCCAGCAAGAACTACGACTATGACTACGACTCGTACCAGCCGTTCTTCTACTTCGACAACGAGGAGGAGGACTTCTACACGCAGCAGCACGGCCAGCCGCCGGCTCCCAGCGAGGACATCTGGAAGAAGTTCGAGCTCCTGCCCACTCCTCCTCTGTCCCCGAGCCGGCGCTCGtccttctccagctccttcCCCTCCACAGCCGATCAGCTGGAGATGGTCACCGAGTTTCTCGGGGACGACGCGGTCAATCAGAGTTTCATTTGCGACTCGGATTCGTCGCAGTCTTTACTCAAGTCCATCGTGATTCAGGACTGCATGTGGAGCGGCTTCTCTGCAGAGGCTAAGCTGGAGAGAGTGGTGTCTGAGCGGCTAGCGTCTCTCAGAGCGGCCCGTAAAGCCTCGACTCCCAAAAGCGAGTGCTCAGAGGACTCGGTCTCACATGCCGGCTACCTACAAGACGTTAATGTTAACTCCGCTTCGGACTGTATAGATCCTTCGGTGGTGTTTCCCTACCCGCTTACCGAGTGTGTGAAGTTCAGTAAGGAGTGTGAGAGCTCTCTGATGGACACTCCGCCCAAcagcggcagcagcagcagcagcgacaGTGAGTCCGATGAGGACGACGacgacgaggaggaggaggaggaggaggatgaggagatcGACGTCGTGAcggtagaaaaaagaaaatcggCCAAGAAGTGCGACTCGCAACCCGTGGTCCTGAAGCGGTGTCACGTGACCAGCCAGCAGCACAACTACGCGGCGCAGCCGTGCACGCGGAACGAGCAGCCGGCCGGCAAGCGGCTCCGCTTAGACGGTAACAATAGCGGCGGCGCGCGAGCGCACAGACAAAACGGCGCAAACCGCAAATGCGCGAGTCCCAAAGCCTCGGACTCTGAGGACAACGACAAACGGCGGACTCACAACGTGCTGGAGCGGCAGCGGCGCAACGAGCTCAAGCTGAGCTTCTTCGCGCTGCGTGACGAGGTTCCGGCTGTGGCCAACAACGAGAAAGCGGCCAAGGTGGTCATCTTAAAAAAGGCCACGGAGTTCATTGTGGGACTGCAGACTGAAGAGCGAAAGCTCCTGCACTCCAAGGAGCAGCTCAAGAAGAAGTGTGAGCACTTAAAAAGGAGACTGGAAATGCTAAGCAGCTCCTGAGCTGCTCTGGACTGGGACTTTTAAAGCCCTTAAGTAGTTTGACTTGTGATGGTGCTGCACTGAGATGACTTGGACTCGCGTTATATTGCACCCCATCATGGTTGCAGACTTGACCTTAATGCATTTACACTGCCTCAGATTCACTTGAGGTTTCagattatttgtatttaattttatatttagcaaTGGACAGCAGTACCACTCACTGTTGGACTTaacttaatgtttttgtttttgtttattttttttttgtaaatt
>XM_034304162.1
GCCGGCTAGGGGGCGGAGGGTTTGTGTGTTGAATGGTGACCGGCAGCAACAGCTCACAGCGCGCGCGCAGGCTGTAGTGCTTCAAGATAAAGTTCGGCAGAAACCGGTGAACTTTAAAACCTGGGATTATTTTCACTCACCAGGGAAGCTGTGTGAACATATATTTTCGTGTGTGTCCTCCTGCTACGgCAGTCATCATGCCGCTGAACGTGGCCAGCAAGAACTACGACTATGACTACGACTCGTACCAGCCGTTCTTCTACTTCGACAACGAGGAGGAGGACTTCTACACGCAGCAGCACGGCCAGCCGCCGGCTCCCAGCGAGGACATCTGGAAGAAGTTCGAGCTCCTGCCCACTCCTCCTCTGTCCCCGAGCCGGCGCTCGtccttctccagctccttcCCCTCCACAGCCGATCAGCTGGAGATGGTCACCGAGTTTCTCGGGGACGACGCGGTCAATCAGAGTTTCATTTGCGACTCGGATTCGTCGCAGTCTTTACTCAAGTCCATCGTGATTCAGGACTGCATGTGGAGCGGCTTCTCTGCAGAGGCTAAGCTGGAGAGAGTGGTGTCTGAGCGGCTAGCGTCTCTCAGAGCGGCCCGTAAAGCCTCGACTCCCAAAAGCGAGTGCTCAGAGGACTCGGTCTCACATGCCGGCTACCTACAAGACGTTAATGTTAACTCCGCTTCGGACTGTATAGATCCTTCGGTGGTGTTTCCCTACCCGCTTACCGAGTGTGTGAAGTTCAGTAAGGAGTGTGAGAGCTCTCTGATGGACACTCCGCCCAAcagcggcagcagcagcagcagcgacaGTGAGTCCGATGAGGACGACGacgacgaggaggaggaggaggaggaggatgaggagatcGACGTCGTGAcggtagaaaaaagaaaatcggCCAAGAAGTGCGACTCGCAACCCGTGGTCCTGAAGCGGTGTCACGTGACCAGCCAGCAGCACAACTACGCGGCGCAGCCGTGCACGCGGAACGAGCAGCCGGCCGGCAAGCGGCTCCGCTTAGACGGTAACAATAGCGGCGGCGCGCGAGCGCACAGACAAAACGGCGCAAACCGCAAATGCGCGAGTCCCAAAGCCTCGGACTCTGAGGACAACGACAAACGGCGGACTCACAACGTGCTGGAGCGGCAGCGGCGCAACGAGCTCAAGCTGAGCTTCTTCGCGCTGCGTGACGAGGTTCCGGCTGTGGCCAACAACGAGAAAGCGGCCAAGGTGGTCATCTTAAAAAAGGCCACGGAGTTCATTGTGGGACTGCAGACTGAAGAGCGAAAGCTCCTGCACTCCAAGGAGCAGCTCAAGAAGAAGTGTGAGCACTTAAAAAGGAGACTGGAAATGCTAAGCAGCTCCTGAGCTGCTCTGGACTGGGACTTTTAAAGCCCTTAAGTAGTTTGACTTGTGATGGTGCTGCACTGAGATGACTTGGACTCGCGTTATATTGCACCCCATCATGGTTGCAGACTTGACCTTAATGCATTTACACTGCCTCAGATTCACTTGAGGTTTCagattatttgtatttaattttatatttagcaaTGGACAGCAGTACCACTCACTGTTGGACTTaacttaatgtttttgtttttgtttattttttttttgtaaatt

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K04377 MYC; Myc proto-oncogene protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937348.2 False 1633 mRNA 0.54 3 23648271 23650633
XM_034304162.1 True 1637 mRNA 0.54 3 23648271 23650633

Neighbor

gene id symbol gene type direction distance location
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 6802 23614440 ~ 23641469 (+)
otulinb LOC108268091 coding upstream 40070 23594961 ~ 23608201 (+)
stard3nl stard3nl,LOC107713985 coding upstream 246541 23392658 ~ 23401730 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 257270 23387009 ~ 23391001 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 272086 23353969 ~ 23376185 (+)
LOC113540051 NA coding downstream 363223 24013856 ~ 24016743 (+)
LOC113540619 NA coding downstream 370432 24021065 ~ 24024165 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding downstream 470920 24121553 ~ 24127236 (+)
ccr9a LOC108267400 coding downstream 484043 24134676 ~ 24136808 (+)
LOC113540392 NA coding downstream 494449 24145082 ~ 24148968 (+)
G69641 NA non-coding upstream 37114 23610953 ~ 23611157 (+)
G69570 NA non-coding upstream 191065 23447463 ~ 23457206 (+)
G69522 NA non-coding upstream 279594 23367661 ~ 23368677 (+)
G69514 NA non-coding upstream 316742 23331033 ~ 23331529 (+)
G69449 NA non-coding upstream 356273 23291410 ~ 23291998 (+)
LOC117597085 NA non-coding downstream 4289 23654922 ~ 23767863 (+)
G69722 NA non-coding downstream 107751 23758384 ~ 23774271 (+)
G69735 NA non-coding downstream 196012 23846645 ~ 23849514 (+)
G69736 NA non-coding downstream 204442 23855075 ~ 23857571 (+)
G69870 NA non-coding downstream 271167 23921800 ~ 23922696 (+)
G69509 LOC108267411 other upstream 327928 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 995824 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1885970 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 2008114 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2324304 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 377473 24028106 ~ 24106223 (+)
G69971 NA other downstream 458162 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1208393 24859026 ~ 24871263 (+)
tnr tnr other downstream 2057194 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 2246384 25897017 ~ 25902006 (+)

Expression


Co-expression Network