ccr9a (LOC108267400)


Basic Information

Item Value
gene id ccr9a
gene name LOC108267400
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24134676 ~ 24136808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937349.2
CACAAGTGCGTCACACTGTGGTTAATCCGAAACCTTTAAAGAACAGGGCGCTCACAAACGGCTTCAAACGACAGACTCAACTCAGTTGCATCCTTCTAACCTCTCTTACTGTGAACTCTGGAACACCTGAAAACATATTTCAGACAAGTATTCAGAGAAACTTCagagaataaaaaatgaaaaacatgactGACACTTTGGCTACCTTTTTCACAACAGTCACTCCAACAGATGATTATGGCAGTGGTTCTGGTGATTATGACTTTGACAGCCCGTGTGATAAGAGCATGGTGCGACGCTTCCGCATGTACTATGAGCCCCCTTTGTACTTGCTTATCGTCATTCTGGGCTTCACAGGGAACCTGCTGGTGCTCTGGATCTACACGAACGTCAAGAATCGCCTGAAGACCATGACAGATGTGTACCTGCTGAACCTagccttggctgacctgttcttCTTGTGTACGCTTCCCTTATGGGCTGTGGATGCCATGAAGGGCTGGGCATTTGGCACGGCTCTGTGCAAGGGCACATCAGCACTGTACAAGATCAACTTCTTCAGCAGCATGTTTCTGCTGACTTGCATCAGCGTGGACCGGTACATCTCAATCGTGCAGAGCACCAAGGCACAGAACTCCAAGGAGCTGCGTCTGGCCTGCAGCAAAGTGGTGTGCGTGTTTGTCTGGCTCCTGGCCACCATATTGTCCATTCCAGAGTTTCTCTTTGCCCAAGCCAAAGTGGACTCTGAGGACAATCATTTTTGCACCATGGTCTACTGGAACAATGAAAACAACCATACAAAGATCCTGGTCCTGTCTCTCCAGATCTGCATGGGCTTCTGCATTCCGCTCCTAGTCATGATCTACTGCTACTCTGTCATCATTAGAACCTTGCTCAAGGCCAAGAACTTTGAGAAGCACAAAGCATTGCGTGTCATCCTGGCAGTTGTGATGGTGTTCATCCTTTCTCAGCTGCCATACAATAGCATGCTGGTGGTCGAGGCAACACAGGCAGCAAACACCACCATCACAAATTGTGCCGAGGCCCGGGGCTTTGACATCGCCAGCCAGATCATGAAGAGTGTGGCTTACATGCACAGCTGCCTCAACCCGTTCCTGTATGCCTTCATTGGGGTACGTTTTCGAAAAGACCTGAAAAGGCTGTACAGAAAGTATGGATGCATGACATCCAAATCCGGCAAACATGGAGGTCCACTTCGCTCTTCTGTCATGTCTGATACAGAAAGCACCATGGCTTTCTCACTGTAAACTCAACCTTGGGAAAGTATTAATCCATGAGTTCAGGACTGAGTTCTCAAAATGCTGCCAGAAAGTTCATGAATCTCTGAATTGTGGTAGAGAGACAGATTTCTTCTGAGCAACAAAAGTTGCCTCAGATGAATGCAGGATCCTTCTCTATCTGCCAAATGCTAAGGCCAGTGAAAAGAGATGTGTATGTATAGAAGCCCGTTAATAAGGAATAATTACACAGaatgtacagagtggttatgtTATTTTCTCCATGTCATATGTTGTATTAAAGAAGGCTGTGTTCTCCTTCCTTCAAAGCTATGTAAATAACTTTAAGTGATATGTAtgactgattatttttatgtcTGACTTTCAGGACTCCAGGTGTATCACCTTTGTTTGCTGCAAGAACTTGTACTTCTgtatgcattttctttttatcgTCATAGTATTACATGGAAATCAATGTAATGCGAAACTGAgccagtgtatatatatatatgtttgttgaGACTTTTTTGTACCAAGACTAAATTAAATTCCAGTTAAAACTAA

Function

NR:

description
C-C chemokine receptor type 9-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG:

id description
K04184 CCR9, CDw199; C-C chemokine receptor type 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937349.2 True 1805 mRNA 0.44 3 24134676 24136808

Neighbor

gene id symbol gene type direction distance location
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding upstream 7440 24121553 ~ 24127236 (+)
LOC113540619 NA coding upstream 110511 24021065 ~ 24024165 (+)
LOC113540051 NA coding upstream 117933 24013856 ~ 24016743 (+)
mycb LOC108268289 coding upstream 484043 23648271 ~ 23650633 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 493207 23614440 ~ 23641469 (+)
LOC113540392 NA coding downstream 8274 24145082 ~ 24148968 (+)
si:dkey-154p10.3 LOC108267397,LOC107736657 coding downstream 24970 24161778 ~ 24170467 (+)
LOC113540614 NA coding downstream 33838 24170646 ~ 24174507 (+)
opn4.1 opn4m2 coding downstream 38450 24175258 ~ 24176754 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding downstream 42159 24178967 ~ 24183754 (+)
G69966 NA non-coding upstream 50458 24083606 ~ 24084218 (+)
G69946 NA non-coding upstream 124816 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 191604 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 211980 23921800 ~ 23922696 (+)
G69736 NA non-coding upstream 277105 23855075 ~ 23857571 (+)
G69987 NA non-coding downstream 1827 24138635 ~ 24138888 (+)
G70129 ccdc24 non-coding downstream 429437 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 430192 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 433840 24570648 ~ 24570850 (+)
G70138 NA non-coding downstream 437528 24574336 ~ 24574570 (+)
G69971 NA other upstream 24787 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 28453 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 814333 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1482229 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2372375 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 722218 24859026 ~ 24871263 (+)
tnr tnr other downstream 1571019 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1760209 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 2079256 26216064 ~ 26224038 (+)
G71385 NA other downstream 2091956 26228764 ~ 26229191 (+)

Expression


Co-expression Network