foxq1a (LOC108268192)


Basic Information

Item Value
gene id foxq1a
gene name LOC108268192
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6162153 ~ 6163840 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947455.2
TTGTGCAGGTACAGATTCAGCTGCTCTTACACGCGAACTTGGAGAAGTTTGATCGCAAGCCTGGTTGAACTCCCAAACAAAGCGACTTTGACTTTCGGTGAACAGCGGGGATTTtattcgtcttcttcttcttcatttttttttttacactaaacTTTTCTGTGAGTGCAGGACTTGTGATCATGAAGCTGGAGGTTTTCCGCGGTGCGCATCTCCACGCGAAGCCAGCGGAGACGTGCAGCGACGCCGAGACCAGCGTGCCGTCTCCGCTCTCCGGGGAAGACGAACTGGGGTCAGATGGCGACTGCGCAGCGCACAGCCCGTGCGCACCTGTCGCGTCTTCCGCCGCCATGTCCTCTGCAGCAGCTCGCATCGAGGGCAAGGACAAGGGCAAGCCGTACACGCGCAGACCAAAGCCGCCGTACTCGTACATCGCCCTGATCGCCATGGCCATCCGCGACTCCAGCTCGGGCCGCCTGACCCTCGCCGAGATCAACGACTACCTCATGCGCAAGTTCCCGTTCTTCCGCGGCACGTACACGGGCTGGCGCAACTCGGTGCGCCACAACCTGTCGCTCAACGACTGCTTCCTGAAGGTGCTCCGCGACCCCTCGCGCCCCTGGGGCAAAGACAACTACTGGATGCTGAACCCGCACAGCGAGTACACGTTTGCCGACGGCGTGTTCCGGCGACGCAGGAAGCGCATCGGCAAAAAAGCGGGCCGGGAGCAGGACGAGAGCGCAACCCGAGCCTCCGACTCTGTAAACGCGCCCTCAGCAGCAACCAAGTTCACAAGCCCGTTCGCCATCGACAGCATCCTGAGCCGACCTTTCCGCAGAAGGGAGCAGCCGGAGCACTGCGCGCCAGAGGACGTCGCTGTGGCCTCTTGGCCCGGGCGCGCCCCCGCACCGGCGCCCTACGTCACGCGCGGCGCACCACTTCACGCGCTGGTCAATGCGAGCGCCGCGGTGCACACGCTCCGCGCCTACGGCATGATGGGCGTCGCGTTTGAGGACTTGTCCGCCGGGGTCCGGCATGACAGAGACTTCCTCAGCGTTCCTCTGAGCTCAGAGCGCCTTCCGGTGCCGAGGGTCACACCGACCACCGCACACGCGTCCACCAAAGCCGGAGCCTTCCACCCGTTTCAAATAGACTACTTATTATCCTAATGGCGCGCGGGACAATGGTTTATTTGGCACTTTATACGCACTGTACTCGTTTATGGACTTTAAACATTTCATCAAGGAGTTGCCACCAGTGGACTTGGGAACTCTGGTATAAAATGGAGTACATGCACAAAGACAGGAGAAGATTTCTGTCCTGTCAGTAAATACTGTTGTATAATAATGTTAGATCTTGTATTTATGATATGATGTTGGTCATTTTTCCTCCTGTGTGTTTTGCTTGCTCAGGAATATTGCTGCGATCGGGATTTTGCCTCAGCTGAAATATCACTTTGCTTGCTCTGTCGTCTCTGAAAGCAATGACACTGACAGcaatgctgttgttgttgttgttgatgttgttgttgttgttgttgttttaataaaaaggtCAGCTAAAAGGTACAAGGACAAGCTCAGCTCTGCCTGTAAACTGGACAGCACTGCTAAAGTCTACTGAAAAGAATGCATGCGAATTTTTATAATGagcaataaaaatttatttctgtagcaaagaaaaaaaaa

Function

NR:

description
PREDICTED: forkhead box protein Q1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09410 FOXQ, HFH1; forkhead box protein Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947455.2 True 1688 mRNA 0.55 1 6162153 6163840

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_1 NA coding upstream 22781 6139300 ~ 6139372 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding upstream 124921 6014920 ~ 6037232 (+)
dusp22b dusp22,LOC103368952,LOC100701332 coding upstream 152369 5991928 ~ 6009784 (+)
LOC117597064 phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649 coding upstream 233570 5919643 ~ 5928583 (+)
phlpp1 phlpp1,LOC105899321,LOC107563109,LOC101073770,LOC104947935 coding upstream 260738 5829806 ~ 5901415 (+)
foxf2a LOC108267118 coding downstream 7189 6171029 ~ 6177159 (+)
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding downstream 38682 6202522 ~ 6204890 (+)
wrnip1 wrnip1 coding downstream 387145 6550985 ~ 6572077 (+)
LOC113547283 NA coding downstream 408228 6572068 ~ 6576902 (+)
dhx30 dhx30 coding downstream 416515 6580355 ~ 6602411 (+)
G60036 NA non-coding upstream 263163 5897899 ~ 5898990 (+)
G60033 NA non-coding upstream 308265 5853669 ~ 5853888 (+)
G60029 NA non-coding upstream 319079 5842775 ~ 5843074 (+)
G59993 NA non-coding upstream 434712 5726602 ~ 5727441 (+)
G59990 NA non-coding upstream 436485 5725446 ~ 5725668 (+)
G60232 NA non-coding downstream 44262 6208102 ~ 6208314 (+)
LOC117596998 NA non-coding downstream 113765 6277605 ~ 6295446 (+)
G60267 NA non-coding downstream 132151 6295991 ~ 6296234 (+)
LOC117596997 NA non-coding downstream 137485 6301325 ~ 6305562 (+)
G60312 NA non-coding downstream 216405 6380245 ~ 6380462 (+)
trnat-ugu_2 NA other upstream 18351 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 565928 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 770324 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 972440 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1147340 4974195 ~ 5014813 (+)
LOC117597080 NA other downstream 431286 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 520496 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1892216 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2531512 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2560705 8724545 ~ 9370485 (+)

Expression


Co-expression Network