igfbp1b (LOC108268024)


Basic Information

Item Value
gene id igfbp1b
gene name LOC108268024
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5596290 ~ 5602267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947456.2
atttgtttttttcgtAACGAATAATTATTACAAGTGGCACGTGTGTCAAATATTAACCCCTTGTGAGGTCACGGCACGGTATAAAAGCAACCCGCTCCGAGCATTAGCCAAGTCAGAAAGTGCAAGAACAGGATCAGGTCAGAATTCACTTCAGCGCACGCTTTGTTTGGTCTGGGTTTGCGCAATGCGCGGATTACTGCTGATTTCCACGCTcgtcttcatcctcctcctcatcctcatcctcatccctGCTCCAGCAGAACAGTCCCCCGTTCCAGCGCCGGAGCCGATCCGGTGCGCGCCGTGTACCGCGGAGAAGCTGAGCGCATGCCCGGCCGCTCCATCCGGCTGCAGGGAGCTGATGAGAGAGCCGGGCTGCGGCTGCTGCATGACCTGCGCGCTGCCCGAGGGCGCCCTGTGCGGGGTGTACACAGCGCACTGCGGCACGGGACTGCGCTGCACGCCGAGAGCCGACGACCCGCACCCGCTCCACTCGCTCACCCGCGGACAGGCCGTGTGCACCGTGGACCACGCCGCGCAAGGTGCGTCTCCCCTCTCTTCCGCCGAGTCCCCGTCCCCTGTAGATCAGCATGAGGCTAAAAAGTTGCCCTACGTGATGTTAAACCATAACCGTCTCCTTACAGAGGAGGCCGGTGAGCACGCCTTCTCCTTACACCACCTGCTGGGGCTGGATAAAGCCGGAGACCCGGAGGCGCACGAGAGCATCAAGGCTAAAGTCAACGCCATCCGGAAGAAGCTGGTGGAACTGGGTCCATGTCACACTGAATTGCACTCTGCCCTGGACACTATCGCGGCCTCGCAGCAGGCTCTGGGCGAGAAGTTTACTACATTTTACCTTCCCAACTGCGACAAGCATGGCTTCTACAAGCCCAAGCAGTGCGAGACGTCCCTCGTCGGCCAGCCTGCACGTTGTTGGTGCGTGTCCGCTTGGAACGGGAAGAGACTCGCAGGATCCGGTGATGTCCCCGAAGATGCCCTCTGCCACCAGGAGATCACTCACTGAACCCTGCTGCTcttctcacacacttacacacaagctgcatttcataaaaaaagcacttttcttAATCAGGACTACCTAAAAAAATATCATTGGGACATTTGGTTCCAACATAGACCTTAATATACTATGTACATACACTGAACCTTTTCTTGACAAAGAGATTgactttcttcatttatttttttgtttcatatcgCTACATATTTATTGAATGTTCCTAAATAAGTAATCATTGAGAAGTATTTATATTTGCTGAAAttgtattattactgttatatttttatttgtatttttattttactattactaTTGTTTGGACTAAACAACTCCACTGCTTCATAGAAATGGCAATAGAACCATGGGACATAGTAAAAACCCATTGCAACACACGCCACTGTGAAAAAAGGCAGAGTGGGTTTGCATACTTTTAGTCTCGCCCCAATTTAGGAGCTTTGTACTTAAACAGCTTCACCATTCATTTGCTTTACGACGTGTCGATTCAGTCTACATTCGTGCGAGTCTACTAAACTTTCTGCCTCAACCTGCGACGCCCGTGTTTGTGAATTTGTccgggctgttttttttttttttcctgccccTAGAAGGAATAGCTCTGGATTTTTCCACTTACACGGGACAACTGCCAATTGATCCCAGATGTTTTGAAGTAGATCGCAGATCTGGCCCGCGTTTGTGACTCATATAAAGCTTCTACCTCTCCGAAGTGCAGGTTCCTCTGTTTCCTCAGGTCCCTCGCTCTGTCCCGTCGCTCTGGAAATCGCTTCCTCGTCGGTTCCTCTGTCCTTTGAGAATATGAAAATCTCagaaaagctgcttttttttttttctttaaaggcaAATGAACTTCATGTTGGTTTGGAGAGCAGAGGATATAACACCATTGGGATTCATTTTAGTTGCAAGCAGGAACGTTTTATGAATATGGTTCCAACATTGCTGCATGCCAGGACATTTTTaaacaggaaaagagagaaaaaccagACAGGGATTTGTAAACCCATGTTGCGGGTGTGTCCCTTGGCTCTCTGCAAaaacacatccatccatccattcatccatccatctaccgtTCCAGCCATCTAGCCATTCAGAGCACTGTCTGAGGTTCACAGGTTCAACAGATTTGGTGTATTCAGCTTGGGAGGACTGAGTTACTAAAGTCTTCTTGCGTGATGCTTCAAACATGCCGATTAAAAGAAAGCGTGATGGAATATTACGCATTTGTGTGGATCTCTATCAATGCCTTTGACCTCGACATCCTGAGTATTTACATGCTGCTAAAGTTCACCTGCCTACCTACCTGTGTGTCgattttgtttttggtttcgTAGTAAATGTAGAAATGATATCAGTGTATGCAATATAATTTCTGTTGTATATgtattcttttaataaaatcaaTGATTCTGATATGA
>XM_026947457.2
cgtAACGAATAATTATTACAAGTGGCACGTGTGTCAAATATTAACCCCTTGTGAGGTCACGGCACGGTATAAAAGCAACCCGCTCCGAGCATTAGCCAAGTCAGAAAGTGCAAGAACAGGATCAGGTCAGAATTCACTTCAGCGCACGCTTTGTTTGGTCTGGGTTTGCGCAATGCGCGGATTACTGCTGATTTCCACGCTcgtcttcatcctcctcctcatcctcatcctcatccctGCTCCAGCAGAACAGTCCCCCGTTCCAGCGCCGGAGCCGATCCGGTGCGCGCCGTGTACCGCGGAGAAGCTGAGCGCATGCCCGGCCGCTCCATCCGGCTGCAGGGAGCTGATGAGAGAGCCGGGCTGCGGCTGCTGCATGACCTGCGCGCTGCCCGAGGGCGCCCTGTGCGGGGTGTACACAGCGCACTGCGGCACGGGACTGCGCTGCACGCCGAGAGCCGACGACCCGCACCCGCTCCACTCGCTCACCCGCGGACAGGCCGTGTGCACCGTGGACCACGCCGCGCAAGAGGAGGCCGGTGAGCACGCCTTCTCCTTACACCACCTGCTGGGGCTGGATAAAGCCGGAGACCCGGAGGCGCACGAGAGCATCAAGGCTAAAGTCAACGCCATCCGGAAGAAGCTGGTGGAACTGGGTCCATGTCACACTGAATTGCACTCTGCCCTGGACACTATCGCGGCCTCGCAGCAGGCTCTGGGCGAGAAGTTTACTACATTTTACCTTCCCAACTGCGACAAGCATGGCTTCTACAAGCCCAAGCAGTGCGAGACGTCCCTCGTCGGCCAGCCTGCACGTTGTTGGTGCGTGTCCGCTTGGAACGGGAAGAGACTCGCAGGATCCGGTGATGTCCCCGAAGATGCCCTCTGCCACCAGGAGATCACTCACTGAACCCTGCTGCTcttctcacacacttacacacaagctgcatttcataaaaaaagcacttttcttAATCAGGACTACCTAAAAAAATATCATTGGGACATTTGGTTCCAACATAGACCTTAATATACTATGTACATACACTGAACCTTTTCTTGACAAAGAGATTgactttcttcatttatttttttgtttcatatcgCTACATATTTATTGAATGTTCCTAAATAAGTAATCATTGAGAAGTATTTATATTTGCTGAAAttgtattattactgttatatttttatttgtatttttattttactattactaTTGTTTGGACTAAACAACTCCACTGCTTCATAGAAATGGCAATAGAACCATGGGACATAGTAAAAACCCATTGCAACACACGCCACTGTGAAAAAAGGCAGAGTGGGTTTGCATACTTTTAGTCTCGCCCCAATTTAGGAGCTTTGTACTTAAACAGCTTCACCATTCATTTGCTTTACGACGTGTCGATTCAGTCTACATTCGTGCGAGTCTACTAAACTTTCTGCCTCAACCTGCGACGCCCGTGTTTGTGAATTTGTccgggctgttttttttttttttcctgccccTAGAAGGAATAGCTCTGGATTTTTCCACTTACACGGGACAACTGCCAATTGATCCCAGATGTTTTGAAGTAGATCGCAGATCTGGCCCGCGTTTGTGACTCATATAAAGCTTCTACCTCTCCGAAGTGCAGGTTCCTCTGTTTCCTCAGGTCCCTCGCTCTGTCCCGTCGCTCTGGAAATCGCTTCCTCGTCGGTTCCTCTGTCCTTTGAGAATATGAAAATCTCagaaaagctgcttttttttttttctttaaaggcaAATGAACTTCATGTTGGTTTGGAGAGCAGAGGATATAACACCATTGGGATTCATTTTAGTTGCAAGCAGGAACGTTTTATGAATATGGTTCCAACATTGCTGCATGCCAGGACATTTTTaaacaggaaaagagagaaaaaccagACAGGGATTTGTAAACCCATGTTGCGGGTGTGTCCCTTGGCTCTCTGCAAaaacacatccatccatccattcatccatccatctaccgtTCCAGCCATCTAGCCATTCAGAGCACTGTCTGAGGTTCACAGGTTCAACAGATTTGGTGTATTCAGCTTGGGAGGACTGAGTTACTAAAGTCTTCTTGCGTGATGCTTCAAACATGCCGATTAAAAGAAAGCGTGATGGAATATTACGCATTTGTGTGGATCTCTATCAATGCCTTTGACCTCGACATCCTGAGTATTTACATGCTGCTAAAGTTCACCTGCCTACCTACCTGTGTGTCgattttgtttttggtttcgTAGTAAATGTAGAAATGATATCAGTGTATGCAATATAATTTCTGTTGTATATgtattcttttaataaaatcaaTGATTCTGATATGA

Function

NR:

description
PREDICTED: insulin-like growth factor-binding protein 1 isoform X1

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0031994 insulin-like growth factor I binding molecular_function
GO:0031995 insulin-like growth factor II binding molecular_function

KEGG:

id description
K23578 IGFBP1; insulin-like growth factor-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947456.2 True 2460 mRNA 0.47 3 5596290 5602267
XM_026947457.2 False 2346 mRNA 0.47 4 5596290 5602255

Neighbor

gene id symbol gene type direction distance location
tada1 tada1,LOC106569412 coding downstream 153587 5435223 ~ 5442703 (-)
fggy fggy coding downstream 169521 5410822 ~ 5426769 (-)
LOC113547296 NA coding downstream 196902 5393877 ~ 5399388 (-)
dnm3b LOC108268313,LOC108413145 coding downstream 239000 5308861 ~ 5357290 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 446068 5129697 ~ 5150222 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding upstream 15596 5617863 ~ 5694235 (-)
LOC113547299 LOC108268057,LOC108440942 coding upstream 124323 5726590 ~ 5738222 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 301929 5904196 ~ 5917960 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 329063 5931330 ~ 5949680 (-)
LOC113547282 LOC108267872 coding upstream 353860 5956127 ~ 5967304 (-)
G59865 NA non-coding downstream 40514 5554951 ~ 5555776 (-)
G59869 NA non-coding downstream 103916 5492026 ~ 5492374 (-)
G59843 NA non-coding downstream 183465 5407481 ~ 5412825 (-)
G59839 LOC108267851 non-coding downstream 205222 5389640 ~ 5391068 (-)
G59838 LOC108267851 non-coding downstream 206992 5388430 ~ 5389298 (-)
G59987 NA non-coding upstream 122258 5724525 ~ 5724761 (-)
G59992 NA non-coding upstream 123711 5725978 ~ 5726434 (-)
G60092 NA non-coding upstream 183028 5785295 ~ 5851346 (-)
G60136 NA non-coding upstream 235867 5838134 ~ 5840474 (-)
G60151 phlpp1,LOC101073770,LOC106599727,LOC106569160,LOC107698933 non-coding upstream 295112 5897379 ~ 5899015 (-)
cldn1 LOC108268314 other downstream 102251 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 509933 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 651269 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 948410 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 1024463 4560788 ~ 4571827 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 297982 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1279115 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2850343 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 2969229 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 3037201 8639468 ~ 9528825 (-)

Expression


Co-expression Network