shrprbck1r (LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993)


Basic Information

Item Value
gene id shrprbck1r
gene name LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4532921 ~ 4553038 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947463.2
gtgcggGCGGATCAGCCAGTGACGGGGTGGTTGGTGTATTTGTAATGACACATTTTGAAAGCACATGAACATAGTAACCAAGTTCGAGCTGGAGCTGAAGTGAAACTGGATACTTTGTTGCCTGCctgccttccttcctttctttctttctttctgctctgTAGGAAAGTAGTTAGGATAATGAGAGAGAAGTTTTTTGTTACGCAAGTGTGGTTatgtaacaacaacaaaataacagtGGTTGAAAGAGAAACGGCGGTGGAATGAGAAGTTATCGACGGTGAAGGTGGAATGTCGCAGAGCTCCGGAGCTCCGCAGCCGCCCCCGGGTCCTCCGCCCTCCTCCttcttcacctcctcctcctcctccacctcctcctacACCTTCTGCTCCTCTCAGCCCGGGCTGGAGGCCTCGGCGGCGGCGGGGGCGGGATGCAGCACCGTGCTGATGTCAGTCAAAGTGGCAGCGAGTCACTCCGGGATCCGGCCGCTGTGTCTCCCCGGCTGCGGGGATGAAACTCTGCGGCTTCAGCTCAGCATGGACCCGGGGAAGGCGGGGGAATTCCGGCTGGCCCTGAGACACAGCAGCGGAACTAACGCgtCCATTGCTGAGTTTGATCTCAGGACGGTGCGCTACGAAGTCAAGACACCACGGAGTCACGAGCTGATCTTGGCCACGTCCCCTCATGACCGCATCACCTTTAACTTCCGCAGCGAACAGGAAGCGCAGGCCTGGGCCACTGTGGTGATGTCATCACTCCGCGAGGCTCATCGAGTGGCCATTGGTTGTCCTGCAGATGATGGACAGCTTCTGCCCCAGCCCCTGGTTGTACAAATGCCCGCCTCACTGTCCAGCACGGAGGAGCTGTGTATGGAGCTGGTTCGGTCTATAGAGGCCGGTGATGTTCAGGCTGCGTCTGTGTGTGCGGAGTCTCTGGCTCGTCAGCACACACCGCTGTGCATTCAGCCAAATCACAAACACTACACCAACAAGGAGATCAgTTTGTCAGTGGTGTTGGAGGATGCTTCCTCTTCCTGTTGTGTCACTGTTAAAGTCTTCCCCCACACCACGGTGGCTGCTCTTAAACAGCAGGTGTTTGTGCAATACGGTTTCCATCCACATGTCCAGCGCTGGGTCATCGGTCACTGTCTGTGCGCCGACTCCCGCTCTCTGGCGTCCTATGGCGTGCAGCAGGACGGAGACACCGCCTTCCTGTACCTGGTGTCCCGACAGAGGCGACAGGACCAGGAGAACTTCCTGCTTGCTCCCACTTCCTCCTCTGGGGACACATATTCTATTGGCAATGGGCCGGAGGGAACGTTGAAAGCCTACAGTACGCTGCCCACCAGACTGCACCCGCACCACAACaacagcgGCAGTCGTAGTTTGGCCGGGATAGAGAGGTTGGGCTTGGGTGAAATCCGTGACCTGATTAACCTGGAGATGCCACAGCTGAACGAAGCCCTCTTGCCCGGCAGAACTAACACACAgcTGGGTTGGGCGTGTCCTTCCTGTACGTACATTAACAAGCCGACGCGTCCCGGCTGTGAGATGTGCAGTGCGGACAGACCCGAGAGTTACACAGTGCCTGGAGGCTACAGACCTGACACACTGGAACTGCGACGCATCCAACAGGAGAAAGAAGCCATCAGACAGTACCAGCAGgcACAGGAAGCAGAGCGCAGGGAGAACTATGCTcggctggtggaggtggacgGTCAGGAACTGGTCCCGAACACAGAGAGCATTGAATGCAGGATTTGTTACTTACAGCTTCAGTCAGGAGAGGGAGTCCTGCTGCGTGAATGTCTCCACTGCTTCTGCAGagaatgTTTGCGTTCGGTAATCCTGCTTTCAGAGGATCCTCAGGTGGCGTGTCCCTACAGAGACGAGGCATACGCATGTGACTGCAcactgcaggagagagagatcCGCGCTctggTTTCGGGTGAGGAGTATGAGCGCTGGCTGCAGCGGGGGCTTTCAGTGGCTGAGTCACGCTGTGAGGGCAGTTATCACTGTGCCACCACCGACTGTCCAggctggtgtgtgtatgaggacaCTGTCAACACCTTCCACTGCCCTGTCTGCAGCAAGCACAACTGCCTGCTCtgcaaggcaaTTCATGAAGGGATGAATTGTAAACAGTACCAGGACGATCTTGCTGCTCGTGCCATCAACGACATTGCAGCCCGGAGAACGAGGGACCTCTTGAAGACTCTGGTGAAGTCTGGCGAGGCGATGCACTGTCCTCAGTGTGGAATCATCGTGCAGAAGAAGGAAGGCTGTGATTGGCTGCGCTGCACTGTGTGTCACACAGAGATCTGCTGGGTCACCAGAGGGCCACGCTGGGGCCCTGGGGGTCCTGGAGACACGAGTGGAGGTTGCCGCTGTAATGTGAATAAACAGAGATGCCACCCAAAATGTCAGAACtgccactgagagagagagagagcgagcgagcaCAAGTGTGAGCGAAACCGTCCCCTGGATGAAAACCAATAACAATGAAAAGCcttaaaaaaagactgaaagcaAAAACCAAAGCTGAATATCATTAACTTTCATGAATCATTATTAAGTTAATAATATTGGacaaaatgcactttttatGTCTTACGCCGAGCATTGATATTACACaggtaaaaatattaatatactgAAGTGCCTTATTTTATAAACCCAACTGTTTTTCAGGGTGCTACATTTTCACATGGATTTTTATAGATCCAGTATAATTCCTGTGTGTTTAACTGTttttcttaacaaaaaaaactttacaattttatttaatattgataaAACACCGTAAACTATTATTCTCAGAGTTTTAATGGTAATGACAAAGCATGAATTTTGGCAAAATTCCAAAATTCCACAGCTACAGTGACAGCTACAGTGACAGTTTTACTCTATTGAGAATAACTGTTCAGTGCCTTATGTTGGAGATTTTGTCTTGAATGAAAACATTCTTGTATGAccttttgtataatttattttacaattcaaGCTATCACTGAtctgaaaacaaacaataaacatttccacatgAAAAAA
>XM_026947464.2
agtgcggGCGGATCAGCCAGTGACGGGGTGGTTGGTGTATTTGTAATGACACATTTTGAAAGCACATGAACATAGTAACCAAGTTCGAGCTGGAGCTGAAGTGAAACTGGATACTTTGTTGCCTGCctgccttccttcctttctttctttctttctgctctgTAGGAAAGTAGTTAGGATAATGAGAGAGAAGTTTTTTGTTACGCAAGTGTGGTTatgtaacaacaacaaaataacagtGGTTGAAAGAGAAACGGCGGTGGAATGAGAAGTTATCGACGGTGAAGGTGGAATGTCGCAGAGCTCCGGAGCTCCGCAGCCGCCCCCGGGTCCTCCGCCCTCCTCCttcttcacctcctcctcctcctccacctcctcctacACCTTCTGCTCCTCTCAGCCCGGGCTGGAGGCCTCGGCGGCGGCGGGGGCGGGATGCAGCACCGTGCTGATGTCAGTCAAAGTGGCAGCGAGTCACTCCGGGATCCGGCCGCTGTGTCTCCCCGGCTGCGGGGATGAAACTCTGCGGCTTCAGCTCAGCATGGACCCGGGGAAGGCGGGGGAATTCCGGCTGGCCCTGAGACACAGCAGCGGAACTAACGCgtCCATTGCTGAGTTTGATCTCAGGACGGTGCGCTACGAAGTCAAGACACCACGGAGTCACGAGCTGATCTTGGCCACGTCCCCTCATGACCGCATCACCTTTAACTTCCGCAGCGAACAGGAAGCGCAGGCCTGGGCCACTGTGGTGATGTCATCACTCCGCGAGGCTCATCGAGTGGCCATTGGTTGTCCTGCAGATGATGGACAGCTTCTGCCCCAGCCCCTGGTTGTACAAATGCCCGCCTCACTGTCCAGCACGGAGGAGCTGTGTATGGAGCTGGTTCGGTCTATAGAGGCCGGTGATGTTCAGGCTGCGTCTGTGTGTGCGGAGTCTCTGGCTCGTCAGCACACACCGCTGTGCATTCAGCCAAATCACAAACACTACACCAACAAGGAGATCAgTTTGTCAGTGGTGTTGGAGGATGCTTCCTCTTCCTGTTGTGTCACTGTTAAAGTCTTCCCCCACACCACGGTGGCTGCTCTTAAACAGCAGGTGTTTGTGCAATACGGTTTCCATCCACATGTCCAGCGCTGGGTCATCGGTCACTGTCTGTGCGCCGACTCCCGCTCTCTGGCGTCCTATGGCGTGCAGCAGGACGGAGACACCGCCTTCCTGTACCTGGTGTCCCGACAGAGGCGACAGGACCAGGAGAACTTCCTGCTTGCTCCCACTTCCTCCTCTGGGGACACATATTCTATTGGCAATGGGCCGGAGGGAACGTTGAAAGCCTACAGCAGTCGTAGTTTGGCCGGGATAGAGAGGTTGGGCTTGGGTGAAATCCGTGACCTGATTAACCTGGAGATGCCACAGCTGAACGAAGCCCTCTTGCCCGGCAGAACTAACACACAgcTGGGTTGGGCGTGTCCTTCCTGTACGTACATTAACAAGCCGACGCGTCCCGGCTGTGAGATGTGCAGTGCGGACAGACCCGAGAGTTACACAGTGCCTGGAGGCTACAGACCTGACACACTGGAACTGCGACGCATCCAACAGGAGAAAGAAGCCATCAGACAGTACCAGCAGgcACAGGAAGCAGAGCGCAGGGAGAACTATGCTcggctggtggaggtggacgGTCAGGAACTGGTCCCGAACACAGAGAGCATTGAATGCAGGATTTGTTACTTACAGCTTCAGTCAGGAGAGGGAGTCCTGCTGCGTGAATGTCTCCACTGCTTCTGCAGagaatgTTTGCGTTCGGTAATCCTGCTTTCAGAGGATCCTCAGGTGGCGTGTCCCTACAGAGACGAGGCATACGCATGTGACTGCAcactgcaggagagagagatcCGCGCTctggTTTCGGGTGAGGAGTATGAGCGCTGGCTGCAGCGGGGGCTTTCAGTGGCTGAGTCACGCTGTGAGGGCAGTTATCACTGTGCCACCACCGACTGTCCAggctggtgtgtgtatgaggacaCTGTCAACACCTTCCACTGCCCTGTCTGCAGCAAGCACAACTGCCTGCTCtgcaaggcaaTTCATGAAGGGATGAATTGTAAACAGTACCAGGACGATCTTGCTGCTCGTGCCATCAACGACATTGCAGCCCGGAGAACGAGGGACCTCTTGAAGACTCTGGTGAAGTCTGGCGAGGCGATGCACTGTCCTCAGTGTGGAATCATCGTGCAGAAGAAGGAAGGCTGTGATTGGCTGCGCTGCACTGTGTGTCACACAGAGATCTGCTGGGTCACCAGAGGGCCACGCTGGGGCCCTGGGGGTCCTGGAGACACGAGTGGAGGTTGCCGCTGTAATGTGAATAAACAGAGATGCCACCCAAAATGTCAGAACtgccactgagagagagagagagcgagcgagcaCAAGTGTGAGCGAAACCGTCCCCTGGATGAAAACCAATAACAATGAAAAGCcttaaaaaaagactgaaagcaAAAACCAAAGCTGAATATCATTAACTTTCATGAATCATTATTAAGTTAATAATATTGGacaaaatgcactttttatGTCTTACGCCGAGCATTGATATTACACaggtaaaaatattaatatactgAAGTGCCTTATTTTATAAACCCAACTGTTTTTCAGGGTGCTACATTTTCACATGGATTTTTATAGATCCAGTATAATTCCTGTGTGTTTAACTGTttttcttaacaaaaaaaactttacaattttatttaatattgataaAACACCGTAAACTATTATTCTCAGAGTTTTAATGGTAATGACAAAGCATGAATTTTGGCAAAATTCCAAAATTCCACAGCTACAGTGACAGCTACAGTGACAGTTTTACTCTATTGAGAATAACTGTTCAGTGCCTTATGTTGGAGATTTTGTCTTGAATGAAAACATTCTTGTATGAccttttgtataatttattttacaattcaaGCTATCACTGAtctgaaaacaaacaataaacatttccacatgAAAAAA
>XR_003404798.2
agtgcggGCGGATCAGCCAGTGACGGGGTGGTTGGTGTATTTGTAATGACACATTTTGAAAGCACATGAACATAGTAACCAAGTTCGAGCTGGAGCTGAAGTGAAACTGGATACTTTGTTGCCTGCctgccttccttcctttctttctttctttctgctctgTAGGAAAGTAGTTAGGATAATGAGAGAGAAGTTTTTTGTTACGCAAGTGTGGTTatgtaacaacaacaaaataacagtGGTTGAAAGAGAAACGGCGGTGGAATGAGAAGTTATCGACGGTGAAGGTGGAATGTCGCAGAGCTCCGGAGCTCCGCAGCCGCCCCCGGGTCCTCCGCCCTCCTCCttcttcacctcctcctcctcctccacctcctcctacACCTTCTGCTCCTCTCAGCCCGGGCTGGAGGCCTCGGCGGCGGCGGGGGCGGGATGCAGCACCGTGCTGATGTCAGTCAAAGTGGCAGCGAGTCACTCCGGGATCCGGCCGCTGTGTCTCCCCGGCTGCGGGGATGAAACTCTGCGGCTTCAGCTCAGCATGGACCCGGGGAAGGCGGGGGAATTCCGGCTGGCCCTGAGACACAGCAGCGGAACTAACGCgtCCATTGCTGAGTTTGATCTCAGGACGGTGCGCTACGAAGTCAAGACACCACGGAGTCACGAGCTGATCTTGGCCACGTCCCCTCATGACCGCATCACCTTTAACTTCCGCAGCGAACAGGAAGCGCAGGCCTGGGCCACTGTGGTGATGTCATCACTCCGCGAGGCTCATCGAGTGGCCATTGGTTGTCCTGCAGATGATGGACAGCTTCTGCCCCAGCCCCTGGTTGTACAAATGCCCGCCTCACTGTCCAGCACGGAGGAGCTGTGTATGGAGCTGGTTCGGTCTATAGAGGCCGGTGATGTTCAGGCTGCGTCTGTGTGTGCGGAGTCTCTGGCTCGTCAGCACACACCGCTGTGCATTCAGCCAAATCACAAACACTACACCAACAAGGAGATCAgTTTGTCAGTGGTGTTGGAGGATGCTTCCTCTTCCTGTTGTGTCACTGTTAAAGTCTTCCCCCACACCACGGTGGCTGCTCTTAAACAGCAGGTGTTTGTGCAATACGGTTTCCATCCACATGTCCAGCGCTGGGTCATCGGTCACTGTCTGTGCGCCGACTCCCGCTCTCTGGCGTCCTATGGCGTGCAGCAGGACGGAGACACCGCCTTCCTGTACCTGGTGTCCCGACAGAGGCGACAGGACCAGGAGAACTTCCTGCTTGCTCCCACTTCCTCCTCTGGGGACACATATTCTATTGGCAATGGGCCGGAGGGAACGTTGAAAGCCTACAGTACGCTGCCCACCAGACTGCACCCGCACCACAACaacagcgGCAGTCGTAGTTTGGCCGGGATAGAGAGGTTGGGCTTGGGTGAAATCCGTGACCTGATTAACCTGGAGATGCCACAGCTGAACGAAGCCCTCTTGCCCGGCAGAACTAACACACAgcTGGGTTGGGCGTGTCCTTCCTGTACGTACATTAACAAGCCGACGCGTCCCGGCTGTGAGATGTGCAGTGCGGACAGACCCGAGAGTTACACAGTGCCTGGAGGCTACAGACCTGACACACTGGAACTGCGACGCATCCAACAGGAGAAAGAAGCCATCAGACAGTACCAGCAGgcACAGGAAGCAGAGCGCAGGGAGAACTATGCTcggctggtggaggtggacgGTCAGGAACTGGTCCCGAACACAGAGAGCATTGAATGCAGGATTTGTTACTTACAGCTTCAGTCAGGAGAGGGAGTCCTGCTGCGTGAATGTCTCCACTGCTTCTGCAGagaatgTTTGCGTTCGGTAATCCTGCTTTCAGAGGATCCTCAGGTGGCGTGTCCCTACAGAGACGAGGCATACGCATGTGACTGCAcactgcaggagagagagatcCGCGCTctggTTTCGGGTGAGGAGTATGAGCGCTGGCTGCAGCGGGGGCTTTCAGTGGCTGAGTCACGCTGTGAGGGCAGTTATCACTGTGCCACCACCGACTGTCCAggctggtgtgtgtatgaggacaCTGTCAACACCTTCCACTGCCCTGTCTGCAGCAAGCACAACTGCCTGCTCtgcaaggcaaTTCATGAAGGGATGAATTGTAAACAGTACCAGGACGATCTTGCTGCTCGTGCCATCAACGACATTGCAGCCCGGAGAACGAGGGACCTCTTGAAGGTCACACACAACTCTGGTGAAGTCTGGCGAGGCGATGCACTGTCCTCAGTGTGGAATCATCGTGCAGAAGAAGGAAGGCTGTGATTGGCTGCGCTGCACTGTGTGTCACACAGAGATCTGCTGGGTCACCAGAGGGCCACGCTGGGGCCCTGGGGGTCCTGGAGACACGAGTGGAGGTTGCCGCTGTAATGTGAATAAACAGAGATGCCACCCAAAATGTCAGAACtgccactgagagagagagagagcgagcgagcaCAAGTGTGAGCGAAACCGTCCCCTGGATGAAAACCAATAACAATGAAAAGCcttaaaaaaagactgaaagcaAAAACCAAAGCTGAATATCATTAACTTTCATGAATCATTATTAAGTTAATAATATTGGacaaaatgcactttttatGTCTTACGCCGAGCATTGATATTACACaggtaaaaatattaatatactgAAGTGCCTTATTTTATAAACCCAACTGTTTTTCAGGGTGCTACATTTTCACATGGATTTTTATAGATCCAGTATAATTCCTGTGTGTTTAACTGTttttcttaacaaaaaaaactttacaattttatttaatattgataaAACACCGTAAACTATTATTCTCAGAGTTTTAATGGTAATGACAAAGCATGAATTTTGGCAAAATTCCAAAATTCCACAGCTACAGTGACAGCTACAGTGACAGTTTTACTCTATTGAGAATAACTGTTCAGTGCCTTATGTTGGAGATTTTGTCTTGAATGAAAACATTCTTGTATGAccttttgtataatttattttacaattcaaGCTATCACTGAtctgaaaacaaacaataaacatttccacatgAAAAAA

Function

NR:

description
ranBP-type and C3HC4-type zinc finger-containing protein 1-like

GO:

id name namespace
GO:0097039 protein linear polyubiquitination biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0071797 LUBAC complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947463.2 False 3060 mRNA 0.51 14 4532922 4553038
XM_026947464.2 False 3019 mRNA 0.51 14 4532921 4553038
XR_003404798.2 True 3071 misc_RNA 0.51 14 4532921 4553038

Neighbor

gene id symbol gene type direction distance location
LOC117597089 NA coding upstream 19458 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 45555 4479498 ~ 4487366 (+)
LOC117597057 NA coding upstream 101915 4417549 ~ 4431006 (+)
LOC117597055 LOC108261462,LOC108261092 coding upstream 124535 4395485 ~ 4408386 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 198754 4315778 ~ 4334167 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 186532 4739570 ~ 4746302 (+)
LOC113547242 LOC108268241 coding downstream 221148 4774186 ~ 4789253 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 252616 4805654 ~ 4866411 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 326762 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 343930 4896968 ~ 4913622 (+)
LOC117597097 NA non-coding upstream 414331 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 477691 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 481673 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 556950 3975285 ~ 3975971 (+)
LOC117597093 NA non-coding upstream 621175 3905850 ~ 3911746 (+)
G59304 NA non-coding downstream 2357 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 110573 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 112974 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 116825 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 117942 4670980 ~ 4671460 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 138916 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 236456 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 471407 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 796598 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 884861 3639830 ~ 3648060 (+)
LOC117597167 NA other downstream 97439 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 154404 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 394099 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 421157 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 626516 5179554 ~ 5189713 (+)

Expression


Co-expression Network