LOC113547217 (LOC108268239)


Basic Information

Item Value
gene id LOC113547217
gene name LOC108268239
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4613028 ~ 4633265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947466.2
gacaggatggagttcagtccactccctgtgatgctctTGCTGACTTCACTGATACCACTGACACATGCTCAAGggaGTTCTAAAGCGGTGGTGTCCATAAAGCCTGATACACATGTGTACACTTGTGAGAGAGTTATTCTCAGATGTGACctacagagaggaggaggagactcTGGGTGGATATACAGCTGGTATAAGAATAATGACAGGCTCTATGTGAATAGAGATAGATTCAGTGCAGACAGCACAATGCAGGAGGTCACTATCAGTTGTGTTATAAAATCTGACCGTGGTGACTACACCTGCAGAGGACAGAGACATGactctcagagctcagagatcagtgatgctgttacactgGCTGTATCAGAGACACCACAGCCAGTACTGAAAGTATCTCCACAGACATGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTATACAGACTGGACATTCAGCTGGTACAGAGATGTTCCATACAGTGACAATAATGGCCATTTCATATATAGAGCGGTGCTCctctcagacagcagcagaggatcTGGAGGCAACTACACTCTCAGTCCTGCTGCTCTTAACCACACAGGAGTTTATGtgtgcagaggagagagagaagaacgaGCCTTTCACACATATTACAGCAATCTACAGCCACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttactaatgactctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTgagacaatacacacacaaatggggATTGTCAATTTGTTCACAATCGGGATCAGTTACAGCATCTACATGTAAAATCAGCTCACTCTCCACATCCCACACTGGAGTTTACTGGTGTGAGTCTCAATCTGAAGAAAACAGTAATCCTGTCAACATCACAGTGTATGcgCCAGGCCCATCACGTGTAGAAGCTCCATCCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCGCTCCATATTTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGctcACACTGAAGACAGAATCAAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCATCTAAGAGAATGCACTGGTGGATGCTTTGGTGTTTTCTTTAAGGTTATGTtgggattttaaaataatattgacTTGTTCTAATGTAGCACAATATCTTACAGCCAGCCTTTTTGTTTTGACTGGATTCATTTAGCTAAAGCTTGTGAATGTTGCTACTGCAAAGTACTGAGTAATCTGAGCAAGTAAAAtagtcttaaaaaaataaaaataaagaaaaaaagattttgggcAAGCTAATGCTTTTGATTTAGTATGTGAGGATTGAGCTGTGCTTCAGCTGAAAACCTGCAAAAAGCCTAAATGTGTCTGCTGTTGGAATGAATTGAATCCCAATATGGGGACCTGCACATTAAAAACTCAAAACATTTCATGTAACATTTCTGATAAAAAGCTTGGTGTGCACTGTTGAGAGCAGCCTTgagatgtgtttttatatttgtttaacttTAATTGTAGTTATGTGAGATTTGTGGACGTAATGATTCGATAAATTAAATTCATCATTATCAATTCACAGAATTATGTAACCTGGTTGCAATGTTGTATCATATGAAGTACAAGTAATACACTGGGAAAACTCTGAATAACTACTCTTGCacctttttaaatattagcattttcaccattttgtatttttatataaaatatgcatttatattgatt

Function

NR:

description
PREDICTED: carcinoembryonic antigen-related cell adhesion molecule 8-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947466.2 True 1805 mRNA 0.41 7 4613028 4633265

Neighbor

gene id symbol gene type direction distance location
LOC113547216 NA coding downstream 3466 4605172 ~ 4609562 (-)
maf1b maf1,LOC108268258 coding downstream 85921 4514603 ~ 4527107 (-)
LOC117597053 LOC108261092,LOC108261462,LOC108261482 coding downstream 328636 4269168 ~ 4284392 (-)
LOC117597100 NA coding downstream 888463 3710571 ~ 3724565 (-)
LOC113525490 LOC108261092,LOC108261462 coding downstream 902481 3704774 ~ 3710547 (-)
LOC113547273 LOC108268233 coding upstream 1060 4634325 ~ 4640284 (-)
LOC113547271 LOC108268229 coding upstream 17429 4650694 ~ 4660380 (-)
LOC113547274 LOC108268240 coding upstream 29875 4663140 ~ 4672185 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding upstream 45474 4678739 ~ 4729122 (-)
nom1 nom1 coding upstream 125384 4758649 ~ 4769871 (-)
LOC117597175 LOC108268239 non-coding downstream 16497 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 21260 4590344 ~ 4591768 (-)
G59385 NA non-coding downstream 52518 4559733 ~ 4560510 (-)
G59303 NA non-coding downstream 58119 4554700 ~ 4554909 (-)
G59287 NA non-coding downstream 125058 4486517 ~ 4487970 (-)
G59398 NA non-coding upstream 43900 4677165 ~ 4678736 (-)
G59416 NA non-coding upstream 124166 4757431 ~ 4757765 (-)
G59559 NA non-coding upstream 236895 4870160 ~ 4914451 (-)
G59598 NA non-coding upstream 324452 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 488871 5122136 ~ 5129619 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 41201 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 356744 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 402922 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 692897 3894592 ~ 3920131 (-)
si:ch73-174h16.4 LOC108268225 other downstream 973820 3629988 ~ 3639208 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other upstream 8755 4642020 ~ 4647880 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 295095 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 449543 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 845277 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1266984 5900249 ~ 5959545 (-)

Expression


Co-expression Network