LOC113547232 (LOC108262378)


Basic Information

Item Value
gene id LOC113547232
gene name LOC108262378
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6644528 ~ 6683316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947478.2
ATCATTCACTCAGTAAGTTCAGAtgattgttatttttctttggaAAGAGGAAGCTTTTATCACTGACACTACACTATATAAGCATCACCACTTCCCTCAGTGTGTTACATCAAGCAAGAAGAGACTCCTGATCAGACtgcatgaAAATTCAGAACTATGGCTCATCAGACTGCCGTGGTGTTACTTCTTATTCTTGGCACAGCAGCAACAGCTTTGGCCAATGTGGTGAATCATCCACCagCTGAAAGTGAAGGATACAGACAGTGTGAATTTGGCTGGAAGTACTATGACGGACGTTGCTTCATATATAAGGGCACTGCTATGGACTGGGCTTCTGCTGAGAAACACTGTCTGAATCTCGGTGCACATTTGATCTCAATACACAGCGAAAATGAATATCAGCTGATTAAGGCTCTTATCCGTGCTCATGACGCCGAGGAGAATCCAACATGGATCGGCCTCACTGGCTGTCAGAAGAGGAATAACTTCTTTTGGTCTGATGGCACCAAATTAACTTTCACCAAGTGGAATCCAGGTGAACCAAATTTTCAGTACGGAGAGTGCTGTGTGCATATGAACTGGTCTGGCAGTAAGAACTGGAATGACATTCCATGCGATCGGACCTATCCCTTTGTGTGTGCCATGAGTGTTAACTGAAATGCTCCCAGCCTCACCTCACCAACTATAATACAATGTTGgaaattttttgtcttgtcactgatgaatttacaaaaaaacctGCAGCAACTTATCATAATTACAgcaataaaaaatctaaaaaaaaaaaataataaatttatttcattaacgATTATCA
>XM_026947479.2
TCATTCACTCAGTAAGTTCAGAtgattgttatttttctttggaAAGAGGAAGCTTTTATCACTGACACTACACTATATAAGCATCACCACTTCCCTCAGTGTGTTACATCAAGCAAGAAGAGACTCCTGATCAGACtgcatgaAAATTCAGAACTATGGCTCATCAGACTGCCGTGGTGTTACTTCTTATTCTTGGCACAGCAGCAACAGCTTTGGCTGAAAGTGAAGGATACAGACAGTGTGAATTTGGCTGGAAGTACTATGACGGACGTTGCTTCATATATAAGGGCACTGCTATGGACTGGGCTTCTGCTGAGAAACACTGTCTGAATCTCGGTGCACATTTGATCTCAATACACAGCGAAAATGAATATCAGCTGATTAAGGCTCTTATCCGTGCTCATGACGCCGAGGAGAATCCAACATGGATCGGCCTCACTGGCTGTCAGAAGAGGAATAACTTCTTTTGGTCTGATGGCACCAAATTAACTTTCACCAAGTGGAATCCAGGTGAACCAAATTTTCAGTACGGAGAGTGCTGTGTGCATATGAACTGGTCTGGCAGTAAGAACTGGAATGACATTCCATGCGATCGGACCTATCCCTTTGTGTGTGCCATGAGTGTTAACTGAAATGCTCCCAGCCTCACCTCACCAACTATAATACAATGTTGgaaattttttgtcttgtcactgatgaatttacaaaaaaacctGCAGCAACTTATCATAATTACAgcaataaaaaatctaaaaaaaaaaaataataaatttatttcattaacgATTATCA
>XM_026947481.2
CCATAATTCAGTGTGTTACATCAAGCAAGAAAAGATTCCTGAATAGACTGCCTGAAAATTCAGAACTATGGCTCATCAGACTGCCGTGGTGTTACTTCTTATTCTTGGCACAGCAGCAACAGCTTTGGCCAATGTGGTGAATCATCCACCagCACCTGAATTTGATAAGATCGTGAAAGCTGAAAGTCAAGGAGACAGCGAGTGTCCTCTTGGCTGGAAGTACTATGGCGGACGTTGCTTCATATATAAGGGCACTGCTTTGGACTGGGCTTCTGCTGAGaaACACTGCCTGAATCTCGATGCACACGTGGTCTCAATACACAGCGAAAATGAATATCAGCTGATTAAGGCTCTTATCCGTGCTCATGACCCCGAGGAGAATCCAACATGGATCGGCCTCAGTGGCTGTCAGAAGAGGAATAACTTCTTTTGGTCTGATGGCACCAAATTAACTTTCACCAAGTGGAATCCAGGTGAACCAAATTTTCGATTCGGAGAGTGCTGTGTCCTTATGAACTGGCCTTACAGTATGAACTGGAATGACATTTCATGCGATCGGACTTATCCCTTTGTGTGTGCCATGAGTGTTAACTGAAATGCTCCCAGCCTCACCTCACCAACTACAATACAATGTTGGaaaatttttttcttgtcactgaTGAATTTACAAAAAACCTGTGGCAACTTATCATAATTACAgcaataaaaaatcta
>XM_034303774.1
TGCCTGAAAATTCAGAACTATGGCTCATCAGACTGCCGTGGTGTTACTTCTTATTCTTGGCACAGCAGCAACAGCTTTGGCTGAAAGTGAAGGATACAGACAGTGTGAATTTGGCTGGAAGTACTATGACGGACGTTGCTTCATATATAAGGGCACTGCTATGGACTGGGCTTCTGCTGAGAAACACTGTCTGAATCTCGGTGCACATTTGATCTCAATACACAGCGAAAATGAATATCAGCTGATTAAGGCTCTTATCCGTGCTCATGACGCCGAGGAGAATCCAACATGGATCGGCCTCACTGGCTGTCAGAAGAGGAATAACTTCTTTTGGTCTGATGGCACCAAATTAACTTTCACCAAGTGGAATCCAGGTGAACCAAATTTTCAGTACGGAGAGTGCTGTGTGCATATGAACTGGTCTGGCAGTAAGAACTGGAATGACATTCCATGCGATCGGACCTATCCCTTTGTGTGTGCCATGAGTGTTAACTGAAATGCTCCCAGCCTCACCTCACCAACTATAATACAATGTTGgaaattttttgtcttgtcactgatgaatttacaaaaaaacctGCAGCAACTTATCATAATTACAgcaataaaaaatctaaaaaaaaaaaataataaatttatttcattaacgATTATCA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947478.2 True 817 mRNA 0.41 7 6680490 6683316
XM_026947479.2 False 792 mRNA 0.40 6 6680491 6683316
XM_026947481.2 False 714 mRNA 0.43 8 6644528 6647156
XM_034303774.1 False 656 mRNA 0.41 5 6644647 6683316

Neighbor

gene id symbol gene type direction distance location
dhx30 dhx30 coding upstream 42117 6580355 ~ 6602411 (+)
LOC113547283 NA coding upstream 67626 6572068 ~ 6576902 (+)
wrnip1 wrnip1 coding upstream 72451 6550985 ~ 6572077 (+)
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 439638 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 467369 6171029 ~ 6177159 (+)
LOC113547277 NA coding downstream 25065 6708381 ~ 6713301 (+)
LOC113547278 NA coding downstream 30491 6713807 ~ 6719716 (+)
LOC113547276 NA coding downstream 50268 6733584 ~ 6737199 (+)
gpaa1 gpaa1,LOC107671733 coding downstream 57257 6740573 ~ 6755800 (+)
sharpin sharpin coding downstream 76085 6759401 ~ 6768736 (+)
LOC113547253 NA non-coding upstream 20877 6622836 ~ 6623651 (+)
trnar-ucu_1 NA non-coding upstream 213951 6430486 ~ 6430577 (+)
G60384 NA non-coding upstream 218184 6426119 ~ 6426344 (+)
G60362 NA non-coding upstream 230515 6413800 ~ 6414013 (+)
G60312 NA non-coding upstream 264066 6380245 ~ 6380462 (+)
G60529 NA non-coding downstream 105904 6789220 ~ 6797109 (+)
LOC113527002 NA non-coding downstream 119140 6802456 ~ 6805176 (+)
G60536 NA non-coding downstream 126850 6810166 ~ 6812401 (+)
G60548 NA non-coding downstream 193715 6877031 ~ 6895222 (+)
G60554 NA non-coding downstream 203835 6887151 ~ 6906198 (+)
LOC117597080 NA other upstream 47927 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 500726 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 1048303 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1252699 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1454815 5179554 ~ 5189713 (+)
LOC113547228 NA other downstream 1020 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1372740 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2012036 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2041229 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 2211154 8894470 ~ 8896729 (+)

Expression


Co-expression Network