LOC113547258 (LOC108268208,LOC108261287,LOC108268263)


Basic Information

Item Value
gene id LOC113547258
gene name LOC108268208,LOC108261287,LOC108268263
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5129697 ~ 5150222 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947505.2
tgagaagCTGTACACAGACAGTCAGCTGAAACTCTGAAAGCGCTGTCTTCATTTGTCCACGTAACgctgctaatgctaacgctaacGCTAAGTTCCTCACTTTAACTGCCTCGTTGTGGCATTGTGACATTGTAATTTACAACCTAAAACCGTGTGGAAGAGCAGGACTCCGGGATATTGGTGGCAACTTCTGTAACTCGTCACTTCCGGAGACGCGTAACAATGTTGCTCTGCACTTTTAGCTGATAATGAAGAGGCTGAAAGCTGCACTGTTCTGTCTGAGCCTCGTGTTACTGTGTTCCCGGCATCCTGTTCATCATGGCCACTGCTCAGAGCAGAATCAGCTCGACCTACAGAATCAGCCGCAGACCGCATCGGACGTCCCCAATCACCAGGACGAGTCCGAGGAGAACAGAGCAAATGACAAGGATCTCGTAGAGGACTCTCCTGCAGTTTACCCTGTAGGAcatgaaacacagacagacacaacaGACGAGCCACAGACTCAGGAAACCACACTGCAAGACAATGAAAAGACAACTGATAAGGATTTTCAGGTGGACGAGGTCCCAGCGGAGGCGACGATACTCGAGCATGATCCAGAGTCTTCCATTACCCCTGATGATGATGCTGGCTCTCAGAACTCACATGTCTCCCCTCTTCCTGCTGCATCTGTAACTGAGAGTGAGACTGTTCATGTCTCTGAGGAGCTGTCCCCCACTGCTACTGTCTCACCCGGACCAAGTGCATGCAGtgACGGTGATGACTCCTGctcttcctctcctgtcagtccTGTCTCCCCCACCGCTGCCTGTGATGCAGGAGAAAACCCTTCATTTGATTCAGACCTCAACAGTCTTCCCATGGTTTTGGAGAACAGCAGCACATCTGCAAAAGGAAAGAGTGCGAAGGCAAGTTTAGGCCGGGTGAGTCAGGGAACCAATGCCTCCAGCATGCTGAAAGAACAGAACGTTCCAGTATCAACAGAAACAGATCCAGCTCTTCCCAGCAAAGACGCAGAAGACATTCCTACTTTTGATGAGTGGAAGAAGATAATGATGGAGGTGGAGAATGAAAAAAGTCAAACCACGCACACGTCCTTTCAAGGGGGCTCTAGTGCTGTTAAGAAAGTGCAGAAAACCACAAACTATGCCTCTGTGGAATGTGGCGCTAAGATCCTGGCTTCTAATCCTGAAGCAAAGagcactTCGGCCATCCTGATGGAGAATGTAGATGTTTACATGCTGAACCCCTGCAGCAATAAGATATGGTTTGTCATTGAATTGTGTCAGCCCATTCAGGTGAAGCAGCTGGACATTGCCAATTTTGAGCTCTTCTCCTCGACCCCCAAAGACTTTCTAGTCTCAATCAGTGACAGATATCCAACCAACAAATGGGCCAAGCTTGGGACCTTTCATGCCCGGGACGAGCGCACGGTCCAGAGTTTTCCACTGGACGAGCATTTATATGCAAAATATGTCAAGATGTTCACCAAGTACATTAAGGTGGAGCTGTTGTCACACTTTGGGTCTGAGCACTTCTGTCCTCTCAGCCTGCTCAGAGTTTTTGGCACAAGCATGATGGAGGAGTACGAGCTGAATTCTGAGCCCTCTGAGAGACTCAACTTTCAGGATGAGGACGATGATTATCCTCCTGGATATGTTCCATCCGATGACAAATCTTCAAAAAATCTGATTGGGTCTGCCAAGGATGCTATTCTTAACATGGTGAACAATATTGCTGCTAATGTGTTGGGTGGAAATCCAGAAGATGGAGCTCAGAGTGGAGGCAATTATTCCTCCCTGCATTTAAATTTGACTGACACATCAGGAACTCCAGTTCAGACAGTCTCCCCAACCTCATCCAAGATTACAATGGAGAGTTTGGAAGCAGACCAGGATGAATTGAAAAAGGTCACCGAGACCCCGTCAGTGACACAGCATAGAGATGCAGATCCGACAGCTCCTTTACCCACCGCCTCACTCTCAGAGACTGCAACACTGTTAGCTCCAGATCCTGTAGGGACCACACCAAACACAGAAGATCAGATTGTTACGTTGCTACCTGAGGATGAGTCGGTTGAACCAGGCAAGTCCTCCTGCTCTATACCAGAGGAGGCAGAGAAGGAGACAGCGAAGGCTCCAGAGGATCAGCAGTACTCAGGAGTGAAGGAATGTTGGGAGCACACTCCTGActcttgtttttgtgttgtttcacTTAAAGAGTACCTCCTGCAGAGCTGCGTTCCCTTTCCAGCTCGTCAGaggaagaagacaaaaaagaaatctCAAGAATCACATTCTCAACCCAGCACTCTACACAAAAGAGAAACCTCAGTCCCAGTCGCAATCTCATCATCCCTGATGCAAATGCTCCATACCTGGACTGTCGAAACAACCTCTTCAATGGAAGCTTCTGTTGTGGTTGTTCCATCTTTTCCTGAAAGTGAACATGGGCCTGAAGCTGCTTCTCTGGATCTTGCACCAAGTCTTACTTCAGCCCTGGTAACACTTACATACCCTGACAACGTTGCCTCTAGAGCCACTCATGTTGTGGATTTTCTGGACCCTTCGGCTGTTGAGAGTTCTGATTTGAAGCTTAAAGAGAAGAGCAGAGATAAACCAGTGGAGAGCAAAAATACTCCCATTCTCACCTGTAACCTGGAACTGACATCCATACCAGTTTTAACCACCGAAAGTGATGAGATGGATCATGTCCAGATGTCTCTATCTGCAGTAGAGAAATCTACCACTGAAAAGAACACCTTGACACCTAGTATGATGACCAGCACCATGGATCAGGCAACATTTACCCCTCTGTCAACGTCCACAGATCAGTCCTTTGTCCAACCAACCATAAGCAAGAGTGCAACTCCTGATGTAACAACGACAGCTGCTCCTGTAACAGAACATTTAGAGGTGGCTTCAGTTGTCACAGAACCTAAAAGTGAGGAGCTGGTAGAAGAAGCTGTCTTtggaggcaacagtggcaacaTTCAATCAGGAACATATAGTAATGGCCAGTCAGGGCAGCCATCTTCCTCTGACTTCTATGCTGAAATCCCTAGCTCCACTGAGGCACCGATCCATGGCTCCAACCAGAAGGAGTCAGTCTTCATGAGGCTAAACAACCGGATCAAAGCCCTGGAGGTGAACATGTCACTGAGCGGCCGTTACCTGGAACAGCTCAGTCAGAGATATCGAAAACAGATGGAGGAGATGCAGAAGGCTTTCAACAAAACTATCATTAAACTCCAGAACACTTCAAGGATGGCTGAAGAACAGGATCAGAAACAGACCGAGTCTATACAGGTACTGCAGAGGCAGCTGGAGAATGTGACTCAGCTCGTTCTTAACCTGTCAGTGCAAGTGAGCCAGCTACAGAGAGAGGTCTCTGACAGGCACAGCTACCTGCTGCTGTCTGTGGTCCTCGGCTTGCTCATCTGCATCGTCATCTGTGTTAATTACTGTCGCATGTCAGCTGAGAATCTCTCGACAGAACCTGGCACATCCATACCAGACTCCTACAGCTACTGCTGCCCAGACAGAGATTCCCCTGGTTATGAGGATGTGAACCCAAAGCGAAGAGCATCCTATCCATTTTCACAATCATCATTGCAAATCGCAACTACTGAAGgTCCAAGTGAAGCATATAATGTAGAAACTCGGAGGAATTCAACTGGGAGTAAAAAGAAAAAGCGTTGTAAAATGAAATCCGGCAGAAAGCCACAGACGATAACTCCCACACTACTCTCCACCCTATCAGTCCCCAATGGAGGATTGCAGTGTAACCACCACCGTCCTCACAATCTGGACTTAAAGCTGCCTCCTTGTAGCCCAGGCCCTCCTCCTTTCTCCTTTAGAGAATCTTCATCAGAGGGAAGCTCTGAAGACTCCTCCCAATCAGACGAGCCTTCGTTCTGCGGTATCGCCTCCTGCAGCCGCCTCTGTGATTCTCTGCCTGCTCCAAAGAACCGCTCAAAAAAGAGGAGCCGCTTGAAAAAGAGGAGCACGGTACTCAAGCAGCTTCTTCAGCCTGTGGAGTGTAACGGCCCGCCGGTCGCGCCTAAATTCACCCTGCATGGCTTAATCACAGGCTCCACAGAGCTGAGCACGAACAGGCCAGGAGTCCCATTGCTTCCTAGAAAGAACAATTTTGACTGACAATGCTAATGATGCTGATATCTGTAGCCACTGCTGATTGGTAGCTACTAGGTAGGCGAAACTGGTAGCTTTAATATGTGGTAACCTGTGGTAATATGGTTATTCTGTGGATGTAGGAAATATGCCCACAGGGTTGTGGACACTGGGACAATCATCGATCATCATCTGCCTAGCAGAGAAGAATCAGTCGAAGTCAAAATCACGActaaaacatgatttaaaatgtcCTAATACACTGCTGTTTTAAGACGGAAAAAATCATTTGCAAAGATTTTAAATTGGTAAGGCTTACTTATGCTTACTGTGGGTTTTTAAGAGTTTTAGAGTTTAAATTTTGCTGTGACTCAGTCAGAAGCatattatttcatcattaattgcaaaatgttgctatttttttttatataaaaaaaaacgaatCAGAAACTATGTTTTTACTCTGA
>XM_026947506.2
tgagaagCTGTACACAGACAGTCAGCTGAAACTCTGAAAGCGCTGTCTTCATTTGTCCACGTAACgctgctaatgctaacgctaacGCTAAGTTCCTCACTTTAACTGCCTCGTTGTGGCATTGTGACATTGTAATTTACAACCTAAAACCGTGTGGAAGAGCAGGACTCCGGGATATTGGTGGCAACTTCTGTAACTCGTCACTTCCGGAGACGCGTAACAATGTTGCTCTGCACTTTTAGCTGATAATGAAGAGGCTGAAAGCTGCACTGTTCTGTCTGAGCCTCGTGTTACTGTGTTCCCGGCATCCTGTTCATCATGGCCACTGCTCAGAGCAGAATCAGCTCGACCTACAGAATCAGCCGCAGACCGCATCGGACGTCCCCAATCACCAGGACGAGTCCGAGGAGAACAGAGCAAATGACAAGGATCTCGTAGAGGACTCTCCTGCAGTTTACCCTGTAGGAcatgaaacacagacagacacaacaGACGAGCCACAGACTCAGGAAACCACACTGCAAGACAATGAAAAGACAACTGATAAGGATTTTCAGGTGGACGAGGTCCCAGCGGAGGCGACGATACTCGAGCATGATCCAGAGTCTTCCATTACCCCTGATGATGATGCTGGCTCTCAGAACTCACATGTCTCCCCTCTTCCTGCTGCATCTGTAACTGAGAGTGAGACTGTTCATGTCTCTGAGGAGCTGTCCCCCACTGCTACTGTCTCACCCGGACCAAGTGCATGCAGtgACGGTGATGACTCCTGctcttcctctcctgtcagtccTGTCTCCCCCACCGCTGCCTGTGATGCAGGAGAAAACCCTTCATTTGATTCAGACCTCAACAGTCTTCCCATGGTTTTGGAGAACAGCAGCACATCTGCAAAAGGAAAGAGTGCGAAGGCAAGTTTAGGCCGGGTGAGTCAGGGAACCAATGCCTCCAGCATGCTGAAAGAACAGAACGTTCCAGTATCAACAGAAACAGATCCAGCTCTTCCCAGCAAAGACGCAGAAGACATTCCTACTTTTGATGAGTGGAAGAAGATAATGATGGAGGTGGAGAATGAAAAAAGTCAAACCACGCACACGTCCTTTCAAGGGGGCTCTAGTGCTGTTAAGAAAGTGCAGAAAACCACAAACTATGCCTCTGTGGAATGTGGCGCTAAGATCCTGGCTTCTAATCCTGAAGCAAAGagcactTCGGCCATCCTGATGGAGAATGTAGATGTTTACATGCTGAACCCCTGCAGCAATAAGATATGGTTTGTCATTGAATTGTGTCAGCCCATTCAGGTGAAGCAGCTGGACATTGCCAATTTTGAGCTCTTCTCCTCGACCCCCAAAGACTTTCTAGTCTCAATCAGTGACAGATATCCAACCAACAAATGGGCCAAGCTTGGGACCTTTCATGCCCGGGACGAGCGCACGGTCCAGAGTTTTCCACTGGACGAGCATTTATATGCAAAATATGTCAAGGTGGAGCTGTTGTCACACTTTGGGTCTGAGCACTTCTGTCCTCTCAGCCTGCTCAGAGTTTTTGGCACAAGCATGATGGAGGAGTACGAGCTGAATTCTGAGCCCTCTGAGAGACTCAACTTTCAGGATGAGGACGATGATTATCCTCCTGGATATGTTCCATCCGATGACAAATCTTCAAAAAATCTGATTGGGTCTGCCAAGGATGCTATTCTTAACATGGTGAACAATATTGCTGCTAATGTGTTGGGTGGAAATCCAGAAGATGGAGCTCAGAGTGGAGGCAATTATTCCTCCCTGCATTTAAATTTGACTGACACATCAGGAACTCCAGTTCAGACAGTCTCCCCAACCTCATCCAAGATTACAATGGAGAGTTTGGAAGCAGACCAGGATGAATTGAAAAAGGTCACCGAGACCCCGTCAGTGACACAGCATAGAGATGCAGATCCGACAGCTCCTTTACCCACCGCCTCACTCTCAGAGACTGCAACACTGTTAGCTCCAGATCCTGTAGGGACCACACCAAACACAGAAGATCAGATTGTTACGTTGCTACCTGAGGATGAGTCGGTTGAACCAGGCAAGTCCTCCTGCTCTATACCAGAGGAGGCAGAGAAGGAGACAGCGAAGGCTCCAGAGGATCAGCAGTACTCAGGAGTGAAGGAATGTTGGGAGCACACTCCTGActcttgtttttgtgttgtttcacTTAAAGAGTACCTCCTGCAGAGCTGCGTTCCCTTTCCAGCTCGTCAGaggaagaagacaaaaaagaaatctCAAGAATCACATTCTCAACCCAGCACTCTACACAAAAGAGAAACCTCAGTCCCAGTCGCAATCTCATCATCCCTGATGCAAATGCTCCATACCTGGACTGTCGAAACAACCTCTTCAATGGAAGCTTCTGTTGTGGTTGTTCCATCTTTTCCTGAAAGTGAACATGGGCCTGAAGCTGCTTCTCTGGATCTTGCACCAAGTCTTACTTCAGCCCTGGTAACACTTACATACCCTGACAACGTTGCCTCTAGAGCCACTCATGTTGTGGATTTTCTGGACCCTTCGGCTGTTGAGAGTTCTGATTTGAAGCTTAAAGAGAAGAGCAGAGATAAACCAGTGGAGAGCAAAAATACTCCCATTCTCACCTGTAACCTGGAACTGACATCCATACCAGTTTTAACCACCGAAAGTGATGAGATGGATCATGTCCAGATGTCTCTATCTGCAGTAGAGAAATCTACCACTGAAAAGAACACCTTGACACCTAGTATGATGACCAGCACCATGGATCAGGCAACATTTACCCCTCTGTCAACGTCCACAGATCAGTCCTTTGTCCAACCAACCATAAGCAAGAGTGCAACTCCTGATGTAACAACGACAGCTGCTCCTGTAACAGAACATTTAGAGGTGGCTTCAGTTGTCACAGAACCTAAAAGTGAGGAGCTGGTAGAAGAAGCTGTCTTtggaggcaacagtggcaacaTTCAATCAGGAACATATAGTAATGGCCAGTCAGGGCAGCCATCTTCCTCTGACTTCTATGCTGAAATCCCTAGCTCCACTGAGGCACCGATCCATGGCTCCAACCAGAAGGAGTCAGTCTTCATGAGGCTAAACAACCGGATCAAAGCCCTGGAGGTGAACATGTCACTGAGCGGCCGTTACCTGGAACAGCTCAGTCAGAGATATCGAAAACAGATGGAGGAGATGCAGAAGGCTTTCAACAAAACTATCATTAAACTCCAGAACACTTCAAGGATGGCTGAAGAACAGGATCAGAAACAGACCGAGTCTATACAGGTACTGCAGAGGCAGCTGGAGAATGTGACTCAGCTCGTTCTTAACCTGTCAGTGCAAGTGAGCCAGCTACAGAGAGAGGTCTCTGACAGGCACAGCTACCTGCTGCTGTCTGTGGTCCTCGGCTTGCTCATCTGCATCGTCATCTGTGTTAATTACTGTCGCATGTCAGCTGAGAATCTCTCGACAGAACCTGGCACATCCATACCAGACTCCTACAGCTACTGCTGCCCAGACAGAGATTCCCCTGGTTATGAGGATGTGAACCCAAAGCGAAGAGCATCCTATCCATTTTCACAATCATCATTGCAAATCGCAACTACTGAAGgTCCAAGTGAAGCATATAATGTAGAAACTCGGAGGAATTCAACTGGGAGTAAAAAGAAAAAGCGTTGTAAAATGAAATCCGGCAGAAAGCCACAGACGATAACTCCCACACTACTCTCCACCCTATCAGTCCCCAATGGAGGATTGCAGTGTAACCACCACCGTCCTCACAATCTGGACTTAAAGCTGCCTCCTTGTAGCCCAGGCCCTCCTCCTTTCTCCTTTAGAGAATCTTCATCAGAGGGAAGCTCTGAAGACTCCTCCCAATCAGACGAGCCTTCGTTCTGCGGTATCGCCTCCTGCAGCCGCCTCTGTGATTCTCTGCCTGCTCCAAAGAACCGCTCAAAAAAGAGGAGCCGCTTGAAAAAGAGGAGCACGGTACTCAAGCAGCTTCTTCAGCCTGTGGAGTGTAACGGCCCGCCGGTCGCGCCTAAATTCACCCTGCATGGCTTAATCACAGGCTCCACAGAGCTGAGCACGAACAGGCCAGGAGTCCCATTGCTTCCTAGAAAGAACAATTTTGACTGACAATGCTAATGATGCTGATATCTGTAGCCACTGCTGATTGGTAGCTACTAGGTAGGCGAAACTGGTAGCTTTAATATGTGGTAACCTGTGGTAATATGGTTATTCTGTGGATGTAGGAAATATGCCCACAGGGTTGTGGACACTGGGACAATCATCGATCATCATCTGCCTAGCAGAGAAGAATCAGTCGAAGTCAAAATCACGActaaaacatgatttaaaatgtcCTAATACACTGCTGTTTTAAGACGGAAAAAATCATTTGCAAAGATTTTAAATTGGTAAGGCTTACTTATGCTTACTGTGGGTTTTTAAGAGTTTTAGAGTTTAAATTTTGCTGTGACTCAGTCAGAAGCatattatttcatcattaattgcaaaatgttgctatttttttttatataaaaaaaaacgaatCAGAAACTATGTTTTTACTCTG

Function

NR:

description
PREDICTED: SUN domain-containing ossification factor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947505.2 True 4603 mRNA 0.47 24 5129697 5150222
XM_026947506.2 False 4581 mRNA 0.47 23 5129698 5150222

Neighbor

gene id symbol gene type direction distance location
LOC113547224 NA coding downstream 25571 5100415 ~ 5104126 (-)
LOC117597187 LOC108261662 coding downstream 104297 5020107 ~ 5025400 (-)
LOC113547303 LOC108268222 coding downstream 111848 5013348 ~ 5017849 (-)
LOC113547304 LOC108268219 coding downstream 111890 4992589 ~ 5017807 (-)
LOC113547301 LOC108268219 coding downstream 147176 4974262 ~ 4982521 (-)
dnm3b LOC108268313,LOC108413145 coding upstream 158639 5308861 ~ 5357290 (-)
LOC113547296 NA coding upstream 243655 5393877 ~ 5399388 (-)
fggy fggy coding upstream 260600 5410822 ~ 5426769 (-)
tada1 tada1,LOC106569412 coding upstream 285001 5435223 ~ 5442703 (-)
igfbp1b LOC108268024 coding upstream 446068 5596290 ~ 5602267 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding downstream 78 5122136 ~ 5129619 (-)
G59598 NA non-coding downstream 171776 4957717 ~ 4957921 (-)
G59559 NA non-coding downstream 215246 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 371932 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 450961 4677165 ~ 4678736 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 29523 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 41938 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 112262 5262484 ~ 5265109 (-)
G59823 NA non-coding upstream 172279 5322501 ~ 5329901 (-)
G59833 NA non-coding upstream 227831 5378053 ~ 5378280 (-)
LOC113547297 NA other downstream 43340 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 184676 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 481817 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 557870 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 873413 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 328320 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 750027 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1731160 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3302388 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3421274 8571496 ~ 8595625 (-)

Expression


Co-expression Network