LOC113547271 (LOC108268229)


Basic Information

Item Value
gene id LOC113547271
gene name LOC108268229
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4650694 ~ 4660380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947527.2
CAGAACACCACCTCCACGTTAAGGCACCTACCATTTTTATCCAAGAGACTAAATCTGCTGAAGGTAAATTctgagagagcaagaaaaaggaaaaaagagacaggGGAAGAGAGTTATGGCTTCCTCTAGCAATCTCTTATATGAAGAGCAGCTCCAATGTTCCATCTGTCTGGATGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTATGATCTGTCTCAAAGAGTTCTGGGACACCAGTTCACATTACCAGTGCCCAATGTGCACAGCAGATTTCCCCAAAAGACCTGAGCTCCgtgtaaatacttttatttctgaactgAGTGCTCAGTTTAAGATATCAGTTCAGGTGAAATCCAGCAGCACTGCAGATCAACCTTTGTACCTAAAACCTAAAGGGGTTCTGTGTGACACCTGCACTAAGGAAAAGCTGGAGGCTCTAAGGTCCTGTCTGGACTGTGGGGTTTCTTTTTGTATTACTCATCTGATGCCTCATAAAACTAcagctaaattaaaaaaacacaaactgattGACCCtgtggagaacctggaggactACATCTGCCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTACAGATgaccagatgtgtgtgtgtcagttctgTATTTTGGGAGACCACAAGAATCACAACACTGTTCCTATGGAGGAGGAGAGTCAAGAGAAGAAGAATCACCTCGTGGAGACACAGAAACATGTTCAGAAGATGATCCAGAACCGACAGGAAAAGATTGAGGAGCTCAAACAGTCTATAGAACTCAATAAAaaacacacagagaaggaaaaaacagaaagcatgaAGATGTACAGTTCTCTGATGCGCTGTATTGAGAGAAGCCAGGTTGAACTGCTTAAGGTGATGGAAGAAAAGCAGAACGCAACAGAGAGGCAAGCAGAACAGTTCATTAGAGAACTGGAGCAGGAGATAATtgaattaaagaagaaaaacaatgagATGGAGCAGGTCTTACATACACAGGATCACCTCAAGTTTCTACAGATTTACCCTTTTCTGCATGGACCTTTACACAGCAACAATTGGAATAATGTCAGAAATAATTCTCATCTGAATATGGAGACACTGAGGAGAGCTCTGCATCAGCTTCAGGAGTCTCTCAATGAGGAGATGAAAAAGCTTCCAGAGATTGAACTGAAGATACTTCAACAATATGCAGTGGAAGTGACTCTGGATCCTGATACAGCAAATTCTAAACTTATCCTGTCTAATAATAGGAAACAAGTGAGATATGGCAACAAAGGACAGAATGTTCCTGATAACCCAGAGAGGTTTAAGCGTTGTGTCAATGTGCTGGGAAAGGAGGGATTCTCCTCAGGGAGATTTTACTATGATGTCCAGGTCAGAGGGAAAACAGCTTGGGATTTAGGAGTTGCCCGAGAGTCCATTAACAGGAAGGGGGAAATTACATTCAGTCCAAAGAATGGATACTGGATTGTAATGCTGAGAAATAAGACTGAATATAAGGCTTGTGAATCTCCCCTCATCCCCCTTACACTGAAACAGGCTCCTCAGAAGGTGGGGGTCTTTGTGGATTATGAGGAAGGTTTGGTCTCCTTCTATGATGTTGATGCCAAGTCTCATATTTACTCTTTCACTGGTCAGACTTTCACTGAGAAACTCTATCCATTCTTCAGCCCTTGTCTTAATAATGGTGGTAAAAACTCAGCACCGCTGATCATCACGTCTATTGAACATTATTTTTCCACAGAAACCAACTTTACAGAATAAGAGTTAAACCAATACACTCCAAAACTACACAATTGCTGTTAAGGTTAgaagttattttatattattttatttgatgtctgcaattaatagaaaataaattacataattgAATAATAGTTTGTGGACAGataattttgtcttttgtctgatgtgtattaataaaaataaatttcattcaaaaatcaatcaaaattgTAACTATAGAGAATCTATCTACATAATATCTTAATTGTTAAGTCtgttaaaaattgttaaaaccTGATTTATTTAGGTTTCTATTGTTGTCTGTTCTCTGATATACACTTTAACctgtttaatgttaatgtgaaaGAAAGGCAAATCTTGTCTATGGAGATTAGTAATAAACATGGTGAAATCTTTTGCAATGAAAAATCAAGTGTTTGTAAATATAAAGTAGTAAATATAGTGAGACCTTCACAGGTTATGTGTATGTTAATATCTGATACGGTCATGGGGAAAAATGAAAGTACACCTTCCTTTAATTCTATGTTTTAGTTATCAGGACCTAGATAACAGTTGGGTGGTCCTCAACTTCTATaaccaaacaaataacctcaggtgacaacaacaataacaacaacaacaaaaaaaaccccaacagaTTTCATGTAGCCATTTTTCTCTCATAAGTAAactaacattcagaaaccaggtgggaaaaaaataaatacaccctataattcagtaacatgtagaaccaacttt
>XM_026947528.2
CAGAACACCACCTCCACGTTAAGGCACCTACCATTTTTATCCAAGAGACTAAATCTGCTGAAGGTAAATTctgagagagcaagaaaaaggaaaaaagagacaggGGAAGAGAGTTATGGCTTCCTCTAGCAATCTCTTATATGAAGAGCAGCTCCAATGTTCCATCTGTCTGGATGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTATGATCTGTCTCAAAGAGTTCTGGGACACCAGTTCACATTACCAGTGCCCAATGTGCACAGCAGATTTCCCCAAAAGACCTGAGCTCCgtgtaaatacttttatttctgaactgAGTGCTCAGTTTAAGATATCAGTTCAGGTGAAATCCAGCAGCACTGCAGATCAACCTTTGTACCTAAAACCTAAAGGGGTTCTGTGTGACACCTGCACTAAGGAAAAGCTGGAGGCTCTAAGGTCCTGTCTGGACTGTGGGGTTTCTTTTTGTATTACTCATCTGATGCCTCATAAAACTAcagctaaattaaaaaaacacaaactgattGACCCtgtggagaacctggaggactACATCTGCCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTACAGATgaccagatgtgtgtgtgtcagttctgTATTTTGGGAGACCACAAGAATCACAACACTGTTCCTATGGAGGAGGAGAGTCAAGAGAAGAAGAATCACCTCGTGGAGACACAGAAACATGTTCAGAAGATGATCCAGAACCGACAGGAAAAGATTGAGGAGCTCAAACAGTCTATAGAACTCAATAAAaaacacacagagaaggaaaaaacagaaagcatgaAGATGTACAGTTCTCTGATGCGCTGTATTGAGAGAAGCCAGGTTGAACTGCTTAAGGTGATGGAAGAAAAGCAGAACGCAACAGAGAGGCAAGCAGAACAGTTCATTAGAGAACTGGAGCAGGAGATAATtgaattaaagaagaaaaacaatgagATGGAGCAGGTCTTACATACACAGGATCACCTCAAGTTTCTACAGATTTACCCTTTTCTGCATGGACCTTTACACAGCAACAATTGGAATAATGTCAGAAATAATTCTCATCTGAATATGGAGACACTGAGGAGAGCTCTGCATCAGCTTCAGGAGTCTCTCAATGAGGAGATGAAAAAGCTTCCAGAGATTGAGCTGAGGAAAATCCAACAGTACGTAGTGGATGTGACTCTGGATCCTGAGACAGCAAATTCTAAACTCGTTCTGTCTGACGATCGGAAACAAGTGAGCCATGAAGGAAAGCGACAGATTCTCCCCGATAACCCAGAGAGATTTGACCGTTTTCCTAGTGTACTGGGAAAAGAGGGATTCTCCTCAGGGAGATTTTACTATGAGGTGCTGGTCAGTGAGAAGACTAAGTGGATGTTAGGAGTGGCTCGAGAGTCCATTAACAGGAAAGGAAGCattacagcatgtcctgaaaatGGATACTGGACCGTGTGCCTGAGAAACAAGACTAAATATGAGGCTTGTGAATTTCCTCATGCTCATCTCTCCCTGAAACAGGCTCCTCAGAAGGTTGGGGTGTTTGTGGATTATGAAGAGGGACTCGTCTCCTTCTATGATGTTGAGGCCAAGTCTCATATCTACTCTTTCACTGGTCAGTGTTTTACTGATAAACTCTATCCACTCTTCTGCCCCTTCCTCAATGATGGAGGTAAAAATTCAGCACCACTGATTATTACGCCAGTTGAACAGTCTAAGTGAGATTCTTCTTCACCAAAACTTGGCTATGTGAACCCAAAATCATAGCAACATACCTTCTTGCTTCTCACCCATCATATAAAACATCATAATACATACTAACATGTTATGGTTACTATTGTAACAACTTACAAAGGGACCTGTAATGGCGGACcatccacataaatggatttaagaacatttatcacattttttcagCATTGATATtgagaagttttctgtaagtacgtgt

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947527.2 True 2509 mRNA 0.38 7 4654545 4660380
XM_026947528.2 False 1988 mRNA 0.42 7 4650694 4660380

Neighbor

gene id symbol gene type direction distance location
LOC113547273 LOC108268233 coding downstream 10410 4634325 ~ 4640284 (-)
LOC113547217 LOC108268239 coding downstream 17429 4613028 ~ 4633265 (-)
LOC113547216 NA coding downstream 41132 4605172 ~ 4609562 (-)
maf1b maf1,LOC108268258 coding downstream 123587 4514603 ~ 4527107 (-)
LOC117597053 LOC108261092,LOC108261462,LOC108261482 coding downstream 366302 4269168 ~ 4284392 (-)
LOC113547274 LOC108268240 coding upstream 2760 4663140 ~ 4672185 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding upstream 18359 4678739 ~ 4729122 (-)
nom1 nom1 coding upstream 98269 4758649 ~ 4769871 (-)
trnar-ucg_1 NA coding upstream 149412 4809792 ~ 4809864 (-)
c8a c8a coding upstream 206101 4866481 ~ 4878229 (-)
LOC117597175 LOC108268239 non-coding downstream 54163 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 58926 4590344 ~ 4591768 (-)
G59385 NA non-coding downstream 90184 4559733 ~ 4560510 (-)
G59303 NA non-coding downstream 95785 4554700 ~ 4554909 (-)
G59287 NA non-coding downstream 162724 4486517 ~ 4487970 (-)
G59398 NA non-coding upstream 16785 4677165 ~ 4678736 (-)
G59416 NA non-coding upstream 97051 4757431 ~ 4757765 (-)
G59559 NA non-coding upstream 209780 4870160 ~ 4914451 (-)
G59598 NA non-coding upstream 297337 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 461756 5122136 ~ 5129619 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 2814 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 78867 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 394410 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 440588 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 730563 3894592 ~ 3920131 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 267980 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 422428 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 818162 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1239869 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 2221002 6881382 ~ 6899227 (-)

Expression


Co-expression Network