LOC113547274 (LOC108268240)


Basic Information

Item Value
gene id LOC113547274
gene name LOC108268240
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4663140 ~ 4672185 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947532.2
ACCTAATGAGTACATTACAGTGCAAAGCTGCTGAAATCACTTTTCAGTGTGAAGCCACGCTGGTCTTTATTTCAGGAACTAAAACCACTGCAGCCATGGCTTCCTACAGCAGCCCTGCACGTCGGCTTCCCAATGAGCCTAAAATGGTTCTGTGTGATTACTGCACTGAGGAACAGCTGAAGGCTCTAAAGTCTTGTCTGAACTGTGGAGCTTCTTTCTGTCACACTCATCTGATGCCTCATAAAACTACAGCAAAACTCAAAAATCACAAACTGATTGACCCTGTGGAGACCCTAGAAGATTACTTATGCAAGAAACATGAGAGACCCCTCGAGCTGTTCTGTAGAGATgaccagatgtgtgtgtgtgatttctgtaCTAAGGGAGACCACAAAACTCACAACACTGTTCCTATAGAGGAGGAAATTAGAGTGAAGAAGAGCCAGCTTGGTGAGACACAGGCAGACATTCAGAAGATGATCCAAACTCGACAGAAGAAGATTCAAGAACTCAAATCCTCTGTAGAACTCAGTAAAaaaaacacagagaaggagaaagcaGACGTTGTGGAGATCTTCAGTGCCCTGATGCGCTGCATTGAGAGAAGCCAGGCTGAGCTACTTAAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGAGTTCATTAAACATCTGCAGTGTGAAATCACTGAGCTGAAGAGGAGAAACACAGAGCTGGAGCAGCTCTCACATACTGAGGATCATCTCCACCTCCTACAGATTTACCCGTCACTGCGCAGCCCTCTACCCACCTGTAACTGGGCTGATGTCAGAACTGACTCTTATCTCAATGTGGATACTCTGAGGAGAGCTCTGTCTCAGCTTCAGAAATCTCTCAATGAGGAAATGGAAAAGGTTCCTGAGATTAAACTGAAGAGAATTCGGCAACATGCAGtgGATGTGACTTTGGATCCCGATACAGCAAATCCTGCGCTGATCCTGTCTGATGATGGGAAACAAGTGAGACATGGAGATTTGAGACAAAAGCTTCCTGATAATGAGAAGCGATTCGATCATTGTCCTTGCATACTGGGAAAGGAAGGATTTTCTTCAGGGAGGTTTTACTATGAGGTGCAGATCCGAGGGAAGACTAAGTGGGATATAGGAGTGGCCAGAGAGTGTGTTAGTAGGAAAGGGGAGATTAAATACAGCACTGAAAATGGATACTGGGTGTTATGTCTGAGGAATAATACTGAATATAAGGCTTGTGACTCTCCTCCTGTTACCCTCTCCTTGAAACAGACTCCTCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGATCTCCTTCTATAATGTTGACGCCAAGTCTCTTATCTACGCTTTCACTGGTCAGACTTTTAATGGAAAAATTTATCCATTCTTCAGCCCTTCTCTTAATAATGGAGGTAAAAACTCAGcaccactgatcatcacacctgttcaaactgaaataatttttccaTAGAAACTCTATGGTGTTAAGCTTACACcaatgtaatattatatttttaaaaaatactactaaggaggagtttttttttttttaattcttgtaGCAAATGGTGGTGTAGTCCCATCAAAAGTAGTGTGTATACATGGCCCATGGGACAGGACGGGCCAAATACAAGTACTAATCCAACCCAACAAATGAATTTTGATTTTGTAGAATTCATCTTGTGGAGTGTAATTGAACTGAAAgattaaaattgtgaaaaaagaaaaaagtctcgGTTTTTCCAGTAGAgagcaaaatagagcaataaactcagggaCATCAGTTAGCAAGCTAAAAATTTTATGCTGTAACCATGTATATTTTCAAAAGAATTAATTTAGGGGTTTTAGggatgtgaatatttatgcagttaCTTATAACTTTTTAAGattttataatttgtaaatgtttattcaaactatattgtgtgtgtgtgtgtgtgtttgtgcccgCAAGGTTTGGCCCTCTTGACATTGGACTAAGTATAATGTGGCTTGTTACCTAAAATGTATTTGACTCCCCAGATGTATCTCACTCTCCCACCGCTACTGGTTAATGTGTGAAACTTGTTCAAGTTTCATTTTCCaaacacaaattttttttaaacaattagttAACATGGTGAAGACAACACTATTACTTAGTACTCATACTTCCTTCATTCCATTCCTAAGAGTCAGTGCTggtgtaaatttatttttagctttatgAGGTTTGTCTtgatcaaatctttttttttttctcc

Function

NR:

description
PREDICTED: zinc finger protein RFP-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947532.2 True 2277 mRNA 0.40 7 4663140 4672185

Neighbor

gene id symbol gene type direction distance location
LOC113547271 LOC108268229 coding downstream 2760 4650694 ~ 4660380 (-)
LOC113547273 LOC108268233 coding downstream 22856 4634325 ~ 4640284 (-)
LOC113547217 LOC108268239 coding downstream 29875 4613028 ~ 4633265 (-)
LOC113547216 NA coding downstream 53578 4605172 ~ 4609562 (-)
maf1b maf1,LOC108268258 coding downstream 136033 4514603 ~ 4527107 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding upstream 6554 4678739 ~ 4729122 (-)
nom1 nom1 coding upstream 86464 4758649 ~ 4769871 (-)
trnar-ucg_1 NA coding upstream 137607 4809792 ~ 4809864 (-)
c8a c8a coding upstream 194296 4866481 ~ 4878229 (-)
LOC113547302 LOC108268221 coding upstream 288806 4960991 ~ 4973092 (-)
LOC117597175 LOC108268239 non-coding downstream 66609 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 71372 4590344 ~ 4591768 (-)
G59385 NA non-coding downstream 102630 4559733 ~ 4560510 (-)
G59303 NA non-coding downstream 108231 4554700 ~ 4554909 (-)
G59287 NA non-coding downstream 175170 4486517 ~ 4487970 (-)
G59398 NA non-coding upstream 4980 4677165 ~ 4678736 (-)
G59416 NA non-coding upstream 85246 4757431 ~ 4757765 (-)
G59559 NA non-coding upstream 197975 4870160 ~ 4914451 (-)
G59598 NA non-coding upstream 285532 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 449951 5122136 ~ 5129619 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 15260 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 91313 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 406856 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 453034 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 743009 3894592 ~ 3920131 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 256175 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 410623 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 806357 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1228064 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 2209197 6881382 ~ 6899227 (-)

Expression


Co-expression Network