LOC113547280 (phactr1,LOC108267725)


Basic Information

Item Value
gene id LOC113547280
gene name phactr1,LOC108267725
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5783658 ~ 5824929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947540.2
AGCGGAGCTGCTGCGGTTTCAGTGCTGCGCTGAAGCCCCGGATCACGGGCAGCTTTTCCACCGCTCACCTGTGCTAGAAAACCGAAATGAGATCTCAGGTGTGTTTCTGCTAAGCGCTAGGGACGTCTGAAGGTAGTGGGGGATAGATTCGTGGCGGAAataattggatttaaaaaaaaaaggaagccatATTTCTGCGTCCGCGCTACCGATCCGGTTTCTCCTCCATGCTGAAGTCGGCGAGCTGTGGTATGGCGGCTTGCGCCCCCGGGAGTCGCTTTAACGGCGGAtacaccagcagcagcagcaccagcagcagcaccGCCGCGCCCGCGCCGCCTCCGGCTCCTGCGCACAAGGCCAAGCAGAAAGGCTTCTGCCTGGTCAGGATGATGAATCTGAACGGGAAAAAGGAGAACGCAGATCCGCGGAAACAGCAGCACCAGCACGGCACCGTGCCCTTCATCATTCACTGCCACATCGGTAAAGAAATCAAGCACATTTGCGGCAACTGCAGCCGCGCCACCGACGCGCAAGACGCGGAGGAGGTGGAGCGGCTGGCTGCCATGCGTACAGAGTCACTCGTGTCCGGGACGCACACGCCACCGATTCGCCACAGGAGCAAGTTCGCCACGCTCGGCCGACTTTTCAAGCCCTGGAagtggaggaagaagaagagcgAGAAGTTCAAGCAGACCTCAGCAGCTCTGGAGAGGGAGATGTCGGCGAGACAGAGCCGGGAGGAGCTGATCAAACGAGGAGTGCTGAAGGAGATCTTTGAGAAAGactcgAGGATGGCTGTAGTGAAGCAGGAGGTGAGGCTGGAAAATGGCCTGTGTGCGACGCCCAACCCTTTAGAGAGCAGCCGAGCGACAGAGCTGCTCCTGCAGGGACTGACAGACGGCCACGGAGCGGCTCCTATTGAATTCCGGGCCTCCATGGAAGGCAGCGTTTGTCCTCAGGACCCCTCCCTGAAGTCGTCCCTGGTTCTGCCTGCTAAGAAATCAGTGGTTTTTCCAGGTGAGGTTCAGGAGAACCCTGCGAAAGCCGTGCTCTTCCACAAGCAGCCGCCCGCTCTGCCACCGAAGCCTTTTACCCGGCAGCTGAACCACAGCATAGAGCCATGTCAGACCCTGAAGCTGCCCTGCGTTCAGGGGAAacactctcctcctcttcctcctaaGAAAGTGATGATCTGCGTGCCATCCGGAGGCCTGGAGCTGCCCGTCTCCTCCCCGAGCCCTCTCGCCACCTACCCCGGGAAGTGCACTCCCATAATGCACCACGGCAGCCTGGGGGGGCATCACGGACACCCGCACCAGCTGCAGTACGGCAGCGTGCCCAGCCGCATCATCGAGGAGCTCAACAAGACGCTGGCGCTGTCCATGCAGAGGCTCGAGAGGTCCGTCTGGGGCTCATGCAGttctgcattgcattctgggcaGTGTGGTCTTTTGGAGAGCAGGCCGGTACCCACGGTGGTGATCGACTGTGAGGACGATAAGGAGAACATGCCCAGTGAGTCAGACTACGAGGACTTGCCCAGCATGTACAAGGACGACCTGGAGGAAGAAGACGAGGAGGACGATGAAGAGGACGACGACTCGCTATTCacaaaTACTTTAGCCCTGAAGGTGTTGAGGAAAGACTCGCTGGCTATAAAGCTGAGTAACAGGCCATCTAAAAGGGAGCTGGAGGAGAAGAACATCCTGCCCATGCAGACGGACGAGGAGAGGCTCGAGTCCAGACAGCAGATCGGCTCCAAACTCACACGGAGACTGAGCCAAAGACCCACAGCAGAGGAACTGGAGCAGCGAAACATCTTGAAACCACGGAATGaacaggaggagctggaggagaagAGGGAAATCAAACGGAGACTTACGCGCAAGCTCAGCCAAAGGCCCACGGTGGAGGAACTGCGGCAGGCCAAGATCCTGATCCGCTTCAGCGATTATGTAGAAGTAGCCGACGCTCAGGACTACGACCGGCGGGCTGATAAACCCTGGACACGCCTCACTGCTGCAGACAAGGCTGCCATACGGAAGGAGCTCAACGATTACAAGAGCACGGAGATGGAAGTGCATGAATCCAGTCGCCATTTAACCagGTTTCACAGGCCGTAGACGAGCGCGTAGACGAGCGCGTGGACGGGACCGGAGTGCTCGTGCTGCACCTCGTTCACTCCGAACCACAAGTGCTCGTCAAATCGATGGTGCACGAAATCACACTAAAAGCCAAGTCCTTGAGAGGGAGGGGGCAAAAATGTATGCCTTTTACAAAACCCAGGACGTCGCCCCAAAACCTCACCAGCCTGAAATTTtgctgtaaggaaaaaaaaacacaccgtGGTAGGAAAACGTGCGTGTTTTTGCCATGAACAAGCCTGGAAACGGCTTTTCATGCGTTGACACGTCTACTTCTTTTCTGATTcacgttttttttgttgttttttcatccaCACACTCCACTCGCTGTTCATGTTTTCTCCCGGATGGTCAGAAGATGGCGCTGGAACCACACCGGCTCAGATGGAATGATTTCATGTGCAATATGTGAATACGTGTTCTGATCATCGTTTCTCCGGCACCCTCTGCTGGCCAGCAccattctacacacacacacacacacacacacacacacacacacacacacacacacacacacacgctcgctcgctcgctctcaCACTGTACAGACTCTATGGACCTCTGCAGCAAACTGTGAGCGGCGGAGCTCAGACGGCGCTTTGTGCTCTCGCCTCGTGTACATGATGTTTATACCGGATTATTGAGTAGAATATTTTAAACGtgtaaaatgcattattatacaAATAAGGAATGGAaacctttatttaaataagGAAGGGCTTGCTTGAGGGTTGGAGGATGCAGATatgtatatgattatatatgaacagtatccattttgtttttgctgtttgtgcatctgtttgtttttaaataattatttataatatttttatttaattataaggctgcctt
>XM_026947541.2
AGCGGAGCTGCTGCGGTTTCAGTGCTGCGCTGAAGCCCCGGATCACGGGCAGCTTTTCCACCGCTCACCTGTGCTAGAAAACCGAAATGAGATCTCAGGTGTGTTTCTGCTAAGCGCTAGGGACGTCTGAAGGTAGTGGGGGATAGATTCGTGGCGGAAataattggatttaaaaaaaaaaggaagccatATTTCTGCGTCCGCGCTACCGATCCGGTTTCTCCTCCATGCTGAAGTCGGCGAGCTGTGGTATGGCGGCTTGCGCCCCCGGGAGTCGCTTTAACGGCGGAtacaccagcagcagcagcaccagcagcagcaccGCCGCGCCCGCGCCGCCTCCGGCTCCTGCGCACAAGGCCAAGCAGAAAGGCTTCTGCCTGGTCAGGATGATGAATCTGAACGGGAAAAAGGAGAACGCAGATCCGCGGAAACAGCAGCACCAGCACGGCACCGTGCCCTTCATCATTCACTGCCACATCGGTAAAGAAATCAAGCACATTTGCGGCAACTGCAGCCGCGCCACCGACGCGCAAGACGCGGAGGAGGTGGAGCGGCTGGCTGCCATGCGTACAGAGTCACTCGTGTCCGGGACGCACACGCCACCGATTCGCCACAGGAGCAAGTTCGCCACGCTCGGCCGACTTTTCAAGCCCTGGAagtggaggaagaagaagagcgAGAAGTTCAAGCAGACCTCAGCAGCTCTGGAGAGGGAGATGTCGGCGAGACAGAGCCGGGAGGAGCTGATCAAACGAGGAGTGCTGAAGGAGATCTTTGAGAAAGactcgAGGATGGCTGTAGTGAAGCAGGAGGTGAGGCTGGAAAATGGCCTGTGTGCGACGCCCAACCCTTTAGAGAGCAGCCGAGCGACAGAGCTGCTCCTGCAGGGACTGACAGACGGCCACGGAGCGGCTCCTATTGAATTCCGGGCCTCCATGGAAGGCAGCGTTTGTCCTCAGGACCCCTCCCTGAAGTCGTCCCTGGTTCTGCCTGCTAAGAAATCAGTGGTTTTTCCAGGTGAGGTTCAGGAGAACCCTGCGAAAGCCGTGCTCTTCCACAAGCAGCCGCCCGCTCTGCCACCGAAGCCTTTTACCCGGCAGCTGAACCACAGCATAGAGCCATGTCAGACCCTGAAGCTGCCCTGCGTTCAGGGGAAacactctcctcctcttcctcctaaGAAAGTGATGATCTGCGTGCCATCCGGAGGCCTGGAGCTGCCCGTCTCCTCCCCGAGCCCTCTCGCCACCTACCCCGGGAAGTGCACTCCCATAATGCACCACGGCAGCCTGGGGGGGCATCACGGACACCCGCACCAGCTGCAGTACGGCAGCGTGCCCAGCCGCATCATCGAGGAGCTCAACAAGACGCTGGCGCTGTCCATGCAGAGGCTCGAGAGttctgcattgcattctgggcaGTGTGGTCTTTTGGAGAGCAGGCCGGTACCCACGGTGGTGATCGACTGTGAGGACGATAAGGAGAACATGCCCAGTGAGTCAGACTACGAGGACTTGCCCAGCATGTACAAGGACGACCTGGAGGAAGAAGACGAGGAGGACGATGAAGAGGACGACGACTCGCTATTCacaaaTACTTTAGCCCTGAAGGTGTTGAGGAAAGACTCGCTGGCTATAAAGCTGAGTAACAGGCCATCTAAAAGGGAGCTGGAGGAGAAGAACATCCTGCCCATGCAGACGGACGAGGAGAGGCTCGAGTCCAGACAGCAGATCGGCTCCAAACTCACACGGAGACTGAGCCAAAGACCCACAGCAGAGGAACTGGAGCAGCGAAACATCTTGAAACCACGGAATGaacaggaggagctggaggagaagAGGGAAATCAAACGGAGACTTACGCGCAAGCTCAGCCAAAGGCCCACGGTGGAGGAACTGCGGCAGGCCAAGATCCTGATCCGCTTCAGCGATTATGTAGAAGTAGCCGACGCTCAGGACTACGACCGGCGGGCTGATAAACCCTGGACACGCCTCACTGCTGCAGACAAGGCTGCCATACGGAAGGAGCTCAACGATTACAAGAGCACGGAGATGGAAGTGCATGAATCCAGTCGCCATTTAACCagGTTTCACAGGCCGTAGACGAGCGCGTAGACGAGCGCGTGGACGGGACCGGAGTGCTCGTGCTGCACCTCGTTCACTCCGAACCACAAGTGCTCGTCAAATCGATGGTGCACGAAATCACACTAAAAGCCAAGTCCTTGAGAGGGAGGGGGCAAAAATGTATGCCTTTTACAAAACCCAGGACGTCGCCCCAAAACCTCACCAGCCTGAAATTTtgctgtaaggaaaaaaaaacacaccgtGGTAGGAAAACGTGCGTGTTTTTGCCATGAACAAGCCTGGAAACGGCTTTTCATGCGTTGACACGTCTACTTCTTTTCTGATTcacgttttttttgttgttttttcatccaCACACTCCACTCGCTGTTCATGTTTTCTCCCGGATGGTCAGAAGATGGCGCTGGAACCACACCGGCTCAGATGGAATGATTTCATGTGCAATATGTGAATACGTGTTCTGATCATCGTTTCTCCGGCACCCTCTGCTGGCCAGCAccattctacacacacacacacacacacacacacacacacacacacacacacacacacacacacgctcgctcgctcgctctcaCACTGTACAGACTCTATGGACCTCTGCAGCAAACTGTGAGCGGCGGAGCTCAGACGGCGCTTTGTGCTCTCGCCTCGTGTACATGATGTTTATACCGGATTATTGAGTAGAATATTTTAAACGtgtaaaatgcattattatacaAATAAGGAATGGAaacctttatttaaataagGAAGGGCTTGCTTGAGGGTTGGAGGATGCAGATatgtatatgattatatatgaacagtatccattttgtttttgctgtttgtgcatctgtttgtttttaaataattatttataatatttttatttaattataaggctgcctt

Function

symbol description
phactr1 Predicted to enable actin binding activity; protein phosphatase 1 binding activity; and protein phosphatase inhibitor activity. Acts upstream of or within vasculature development. Predicted to be located in cytoplasm; nucleus; and synapse. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 70. Orthologous to human PHACTR1 (phosphatase and actin regulator 1).

NR:

description
PREDICTED: phosphatase and actin regulator 1-like

GO: NA

KEGG:

id description
K17594 PHACTR; phosphatase and actin regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947540.2 True 3005 mRNA 0.54 13 5783658 5824929
XM_026947541.2 False 2984 mRNA 0.54 13 5783658 5824929

Neighbor

gene id symbol gene type direction distance location
LOC113547279 tns3,LOC101063620 coding upstream 228992 5506701 ~ 5554666 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding upstream 317539 5449482 ~ 5466119 (+)
LOC113547281 LOC108267848 coding upstream 349938 5431236 ~ 5433720 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding upstream 373443 5402284 ~ 5410215 (+)
LOC113547263 LOC108261082 coding upstream 477117 5286357 ~ 5306541 (+)
phlpp1 phlpp1,LOC105899321,LOC107563109,LOC101073770,LOC104947935 coding downstream 4877 5829806 ~ 5901415 (+)
LOC117597064 phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649 coding downstream 94714 5919643 ~ 5928583 (+)
dusp22b dusp22,LOC103368952,LOC100701332 coding downstream 166999 5991928 ~ 6009784 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding downstream 189991 6014920 ~ 6037232 (+)
trnat-ugu_1 NA coding downstream 314371 6139300 ~ 6139372 (+)
G59993 NA non-coding upstream 56217 5726602 ~ 5727441 (+)
G59990 NA non-coding upstream 57990 5725446 ~ 5725668 (+)
G59908 NA non-coding upstream 226799 5556591 ~ 5556859 (+)
G59707 NA non-coding upstream 227960 5554950 ~ 5555698 (+)
G59745 NA non-coding upstream 291197 5492201 ~ 5492461 (+)
G60029 NA non-coding downstream 17846 5842775 ~ 5843074 (+)
G60033 NA non-coding downstream 28740 5853669 ~ 5853888 (+)
G60036 NA non-coding downstream 72970 5897899 ~ 5898990 (+)
G60232 NA non-coding downstream 383173 6208102 ~ 6208314 (+)
LOC117596998 NA non-coding downstream 452676 6277605 ~ 6295446 (+)
LOC113547291 LOC108268023 other upstream 187433 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 391829 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 593945 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 768845 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 827191 4947137 ~ 4956467 (+)
trnat-ugu_2 NA other downstream 318603 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 770197 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 859407 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 2231127 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2870423 8695352 ~ 8724440 (+)

Expression


Co-expression Network