LOC113547283


Basic Information

Item Value
gene id LOC113547283
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6572068 ~ 6576902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947544.2
TGAAAGCTAATCTCTAACATACAGCGCGATAAGAAGAATCTCTTGCCAGAGATTGGAAGAAGCTCCGAGGCCACAGAGTTACTTCTTTTGTCTTCTTCAAATTACCTTCCTACTgTGTCGAGTTGCCCAGTAACACATCAGACATGATGATGACTCTGTTCCAACTCCTGTTATTCACAGGCATTGTCCCCTTTGTCCTGTCTGCCTCCCGTAAGTACTATTTGATCCAGGAGATGAAAACATGGCATGATGCCCAGGCTTACTGCCGagccacacacactgacctggctATCATCAAAAGCCTTCATGACATGGTCCACTTTCAGAATGAAGCACAGAGGCAAAGTTTCAATACAGAAGCTTGGATTGGCCTGTACAATGACATCAACAGCTGGCGCTGGTCCTTTAACAGTGAGCCACTAAGAGTTCAATACTGGATATTGGGACAGCCTGACAACGTCGACGGACATGAAGAATGTGGCGCGACAGGGTTGCTCGGTTGGTTTGATGCATCGTGTGACAAGTTAAAATCCTTTCTGTGCTTCGATGCCAGGAACCTTGCTCCTGCCAGGTACATTTACATCTCTGAACTTCAGATGACCTGGTACGATGCTCAGAGTTACTGCAGACAGCATTACACAGACCTGGCCATCATCAACGACTTGCCTGAAGGTTTAAATGTTCAGAGCATGTTGCCTAATGACGCTTGGTTAGGCCTGTTCCGAGACTCCTGGAAGTGGATAGATGAGACCAACATGTCCACCCTTACGTGGGGTCCTGGGCAACCTGATAATatgcacaaaaatgaaaattgtggTTTTGTAACTAACAGCCAGGCAGCTGATGCGCCGTGCTCAGACACAAAGCCTTTCTTCTGTTACGCAGAAATCTCGGAAAGAAAACAAACCGTAAGACTGAAGATCCAGTTCAAACAGAATGTAATTGTTCCCGCAGTAaaggcagccatcttggagAAAATTAAACTGAAACTGATGGAGTATGGGATGGCAGAGAACACCACAGTGAAATGGATAGAGCAGCCTGGTGGTGTGGTGTTTCACAAGGAAGAGcgtaataataatgatgcagAATATGAACCTAAGAATCATGTGACGTCTAAATCTTGAGCCATGTCTCATATCGCTTACTTATGTAATGCATTAGTGGTTTTTTTAGTGTAAGTTGTTTGGTTGCACTGTAAATTTAACAGTAGGAACTGGACTGGGTTTTGTACCATGCCTTCACCTCCTGTTCTGAAATTACTCAGAAACGGGGGCAGAGCCATGGGAGGggtaaactttttaaaatggctGATGCATATGTGTTTATCAATTCTAACTGGACGCAATGAGTTTTATCTACAAGTTATTCAATGAATTCAATCAATTTTCATATTAAGGTATATTGGGTGTAAagctaatttaaataaaagaagagacaaacacaaaataagCTAATTATCAATTTACATACTGCCATAAAAGGCAATCTTTGTTACCTTTAACAAAAGCCTGCTAATTATTTgtactttgtttttattaataagtAGATTGGACTACTGTAATGCTTTCTTTTCTggtcaaattaaattaaaaaacaagaaattagCTGTGTCTAATTCAACAGCTGAtcgagaatgagaaagagatcACATGTTGCGCGAATTTTCAAGTCTGGTTAGTTAGTTTccttattgatttaaaaattcttttattaGTTTGCATGTGGTTATGTGTGGGGAAAAGCTCTGAAGGTGTAAACCAGTCCAGCCCCTCAGATCTGTTCAGAGGAACTTCTTAAATGTAAAATCAAAACTTCCATGTTTAACTTTGGATATAGTTAATAAGACTTTTAATTCatattgcttttattatattttgtagtCTTTCtgttaatgattatattatatatttttagtttgatgtatgtattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947544.2 True 1933 mRNA 0.40 6 6572068 6576902

Neighbor

gene id symbol gene type direction distance location
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 367178 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 394909 6171029 ~ 6177159 (+)
foxq1a LOC108268192 coding upstream 408228 6162153 ~ 6163840 (+)
trnat-ugu_1 NA coding upstream 432696 6139300 ~ 6139372 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding upstream 534836 6014920 ~ 6037232 (+)
dhx30 dhx30 coding downstream 3453 6580355 ~ 6602411 (+)
LOC113547232 LOC108262378 coding downstream 67626 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 131479 6708381 ~ 6713301 (+)
LOC113547278 NA coding downstream 136905 6713807 ~ 6719716 (+)
LOC113547276 NA coding downstream 156682 6733584 ~ 6737199 (+)
trnar-ucu_1 NA non-coding upstream 141491 6430486 ~ 6430577 (+)
G60384 NA non-coding upstream 145724 6426119 ~ 6426344 (+)
G60362 NA non-coding upstream 158055 6413800 ~ 6414013 (+)
G60312 NA non-coding upstream 191606 6380245 ~ 6380462 (+)
LOC117596997 NA non-coding upstream 266506 6301325 ~ 6305562 (+)
LOC113547253 NA non-coding downstream 45934 6622836 ~ 6623651 (+)
LOC113547233 NA non-coding downstream 71880 6648782 ~ 6651846 (+)
G60529 NA non-coding downstream 212318 6789220 ~ 6797109 (+)
LOC113527002 NA non-coding downstream 225554 6802456 ~ 6805176 (+)
G60536 NA non-coding downstream 233264 6810166 ~ 6812401 (+)
trnat-ugu_2 NA other upstream 428266 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 975843 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1180239 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1382355 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1557255 4974195 ~ 5014813 (+)
LOC117597080 NA other downstream 18224 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 107434 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1479154 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2118450 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2147643 8724545 ~ 9370485 (+)

Expression


Co-expression Network