si:ch211-188c16.1 (LOC108268214)


Basic Information

Item Value
gene id si:ch211-188c16.1
gene name LOC108268214
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4879800 ~ 4894423 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947547.2
GCGATGAATGGGCGCGTGCACGAGCTTTGAGTGGTTTGTTAATGAGGACGCAGAGGCGGTGTGACCTTCTCCCCTGATCATTCTCATCAttctcatcatcattatcagCATCATTAGTAAATGAAGAGAGGAAATCAGAATGGAGGCTGCCATTGATTTCAAGTCCCTCCGGGCAAAGTTTCAGGAGGGGGGCCAGCTGAAACAGAGACCTGTGGTTCTGGATAAACCAAAACGCTTCCCACCTATAGCAAGTCGTGGCAGTTATTTACCTAATTCTGCTGTGGAGAACAAAAATCCTGCTATCTCACACTTTAACTTAAGAGATGACCAAAAGATCTTATCAGGGAAACCGCCCAGTGCTGTGCCATCTTGTTTGATTCCACCTGACACGAATGGCGTTGGAAGTAGTGTTGCAAGACGCTCGTTCAAAGATCGTCACTTGCCTCTTGTGCTGCCTGCATCCTCTTCCTGCTCTTCTAACAGTCCAAAGCAGGAGGCCAATGCTTCCTCCAAGCTGGTCACATCACCAATCAATTGCAAGAAGAAGGCCATGCCGACGCCATTCAAGCCTGCCAAGTTTCCCAAGTCCATTAAGGACATTCTGGAAAATGCAGAACATCCTGAAAGCAGCAAGCCACAGTCTGAACATTGTATTGTCGAGAACGGATTCAGCCCTTGCAATGGGGGGTCAAAACCGGGGTCATCCTGTCCAAGCCCAGAGCagccatcaacaccatcacctACAGCTGAAGATCCATCCAATGAGGGTAGCATTCCTCATGTCCTCAGCACTCTGGAGAGAGCCAAGAAAAAGTTCTCACCCAAGAACCTCCTGGTCTATACTCGACCCAAGAGCTTCTACTCCAGTAAAGGACCGACAGAGagccctcctcctcctcctcccctcctcctcctcctccctcctctagAGTATGAAAACCTTCAGTGTGATGCAGAATCTTCATCTCTGAAGTCAGGATATCGTCCTGCTCTCTCACCAACCCTCACTGCCCAAAATCTACCACAAGCCAATGGTATAAATCATAgacCAGGACCTGTTGTGCACCTGAACGGTGATATGAAGCCAGTACGGCCTGGTGCCTGTGTCCCTCCTCTTGTTAAAGCCCTGCCAGACATGACATCACTGGGGTCCCTGCCCAAGAAACCACCGAGACCACCACATGTCGATTTGAGTGCTTACAGGATCCAGAAGCTGGAGAACACAATGGAAAAAGCCTCCATGAAACTGGCTCCTGGTTCAGGCAGTGTAGCTGCTGAAGCTGTGAATGCTGAGAATACACCAATGCCTCCACCTCCTCAGTTTGATGCTCCTCACTTCCTAGATTTTGCCAGTTCTGTATTAGAAGCGTTAAACACCAATGTAATAAATCTTGCTGCTCTGGAGATGGAGGCTACAGACTTTAGTGCCCCACCACCAGGACCTGAAGAGGCGAGTGATGGCAATCTTCACAACGATGTGATCCAGAAGCATGTTGTAGATCCCACAGAACTGGCAGATGGTAATCTGCAGGGATCCAGTTTAGGGCATGTGGCTGATGCACAGTCAATCATGGTACTTGAAGCTCAGCTCATGGAAGCTATGACCACAGACATCTCGATGAACTGTCCTCAGAACGTACTGACCGATTCCTACATCAGCAGTGAACTTCCATCTGAACCAAGcaTCAACCAGCGGGACGATCTTTACGAAAACTGTGACAATGTCTACGAAGAGGTGGAGTCAATCAGCAAATTCAATTTTGGGCAAAACTCCCGCAAACGGAAGGGAGCTCCAAAGAatCCCTATGCTGAGTCACCAGGGAATGAGGATACACGCAAGAGTGTATGGCATGTCGCACAGTGGATGAATGTGACTTCTGAACCCAATGGTGTGACTCCTGCTCGCTGGGACAGTGCTTCATGTATCAGGAAGGAGCGCTCGAGCCCTGACCATCATGAAGAGAAAGAGGCACGGAAGAAAGAGAAGCAACGTTTGGGGCGAGAGAAGAAggagcagaaagagaaggagaagaaggaaaatgagatgaaaaagAAGTTTAAAATCACCGGACAGGAGGAGCCCATGTATCATGCTCGTGTGCTGCTGGGCAGCAAACTGCGCAAACATGACCTACAAGTGAAGAGCGGAGACACGGTCAGCATCATCCGCACCACCAACTGCCCCAAAGGCAAATGGCTGGCCAGGGACTCGCAGAACAAGTatggctATATTTCAGTGATGAATGTGGAGTTGAATATGAAGGAGATGTTGGAGTTGGGGAAACGAGCCTCACAGGCTATCGGGAGAGGACACGGCGAGGCCGACACACTCAGTCTCAGCAGCAGGTCTTCACATTACAACCCGGTTCTCACAAGCAGCTTTACTGATGATAGTGAGGAGTGGACCGGTGATGATGAAACCCTGTCTCATTTACCAGAAAACACGTATCCAAACAGGGCGGTCTCAATGCCTGATATGTTTAACGCTTTTGCCAGTAATCACCATGCTCCGAGTGTCAGCAGTGTGGAGGACGTTCCCTCACAAGTGAATCATGAAGCTCTCCAGAAGCTTGCCGTTTTCTTCCAGAACACCAAAGATGACCTGAACACTGTAACAGAAATCGCAGACCCGATTTCTACCAACATTAATGGTCCAGGTTTGCTGTGTGACGTGGAGGAGCCTCCATAtgtTGAGGAGGACCAGTTCAGTTTCACAGACGTCGAGCTGCTgcctcctcctgaactctacgcCGACTCTGTCTGAACCATCAGGTGATGGTTGAGGTCAGTGCATGTGAAGCCAGACCTTTGTGCTCTGTTACTCCTCTGTTAAACCGAAATCACTGGAACTCCACACTGGTCCTGTTATGATTTTGTCTTTCAGGGGAGCGATGCCATTTCTACACTTCTGTTACACACTCCAGGCTCCTGTTAGCACTCAGGAAATACAGTCCAGTTCTCTGAGAGCTGctattgctaatgctaatactaCACAAGCATACGTTTCAGACTGTTCGACTAAACACTGAACTCTTCTagccagaagtgtgtgtgtgtgtgtgtgtgtgatttcactTCAGCTGTAAAGGAAAGCAGTGTTAAATAGTACATTAataaaagagtgagagagagtgtagcACTTTATGGGTGTGTATTATATCTGAATGTTACACCTTGTTTGGGCTGTGAAGACTTTGCACCATCTTGTATGAACTTGCTTTGCGTTTTCATTTGAACACCCTTTTGGTTCATGATGCCGTGTTTCTGCAtcattttgtttccttttatgtttgtattaaaactcatttc

Function

NR:

description
uncharacterized protein LOC110530524 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947547.2 True 3309 mRNA 0.48 21 4879800 4894423

Neighbor

gene id symbol gene type direction distance location
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding upstream 13389 4805654 ~ 4866411 (+)
LOC113547242 LOC108268241 coding upstream 90547 4774186 ~ 4789253 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding upstream 133498 4739570 ~ 4746302 (+)
LOC117597089 NA coding upstream 366337 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 392434 4479498 ~ 4487366 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 2545 4896968 ~ 4913622 (+)
LOC117597060 NA coding downstream 28228 4922651 ~ 4934918 (+)
LOC117597061 LOC108261662 coding downstream 150705 5045128 ~ 5050075 (+)
LOC113547260 LOC108261847,LOC108267254 coding downstream 257892 5152315 ~ 5178390 (+)
LOC117597179 NA coding downstream 269643 5164066 ~ 5164624 (+)
G59329 NA non-coding upstream 181005 4677167 ~ 4698795 (+)
G59343 NA non-coding upstream 208340 4670980 ~ 4671460 (+)
G59342 NA non-coding upstream 209717 4669863 ~ 4670083 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding upstream 213345 4666012 ~ 4666455 (+)
G59338 LOC108268240 non-coding upstream 215334 4663611 ~ 4664466 (+)
G59478 NA non-coding downstream 55877 4950300 ~ 4950651 (+)
G59479 NA non-coding downstream 57948 4952371 ~ 4952598 (+)
G59483 NA non-coding downstream 63639 4958062 ~ 4958314 (+)
G59521 LOC108268222,LOC108268223 non-coding downstream 117497 5011920 ~ 5017802 (+)
LOC113547270 NA non-coding downstream 369593 5264016 ~ 5266014 (+)
G59366 ube3c other upstream 171402 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 226679 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 326762 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 485795 4049152 ~ 4394005 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 52714 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 79772 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 285131 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 493945 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 685373 5579796 ~ 5596225 (+)

Expression


Co-expression Network