mnx1 (mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758)


Basic Information

Item Value
gene id mnx1
gene name mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4739570 ~ 4746302 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947552.2
tcaacacacacccactcaccctcccacacacacacacacacacacacacctacacacacatgtgagtCCAGAGGACGGCTGGAGATCCGTGTGGGCCACATGGAGAAATCAAAAAACTTTCGCATCGACGCCATTCTGGCTGTGGAGCCTCCAAAAGCTCAGACTTCACCCCTGGCTCTGGTCACCTCACTGTCCAGttcatcctcctcttcatcctcgtCATCATCCTCGGGAAGAAGAAGCAGCGTCCTGGGTTCAGACCTCCTGAGCTCTCCTTCAGCCATGGTGGGACTCCATCCTCCGAGCAGCGCTCTCTACCACCCGCACATGTTCTCCTACCCTCTGGGACAGCCGCCTGTGCTCTCTTACCCCtaccctcctcttcctcatcatgATGAGCCCCTCAAGCTGCCCCCTGGTTCCCTGCAGCTCGATCACTGGCTGAGGATCTCCACCGCCGGGCTCGCGCTCCCCAAACTCCAGACTGACTTCAACCctcagGCTCATCAGTCCACACTGCTGGGGAAATGTCGGAGGCCGCGCACCGCCTTCACCAGTCAGCAGCTGCTGGAGCTGGAGCATCAGTTTAAACTCAATAAATATCTATCCAGACCCAAACGCTTCGAGGTGGCCACGAGCCTCATGCTCACCGAGACCCAGGTAAAAATCTGGTTTCAGAACAGACGCATGAAGTGGAAGCGCAGCAAAAAAGCGAAAGAACAAGAAGCAGCTCAGGAAGCTGCCGAGAAACACAAAGGAAccaaagagaaggagaaaagcgAGCAGGCCGATTCAGCTAAAGGCAGCAGCAGACTGAGAGACTTCAgagacagtgatgatgatgatgatgaagcgGACTCGTACATGTGCAATTCCTCTGAGTGCTCCTCGGAGGACGAGAGAACCCACATGAGCCCTCAACCCTGAGCCTTTCCGTATCCATCACTGAACGCTCCCTTAGGGGAAAacctgcatgtgtgttttcCCATTCCGCAGTGGCCTGTCCTGCTTTCCGGGATCTGATGGTATAAATACACCCTCAAGGAGACTAAGACGTGGACTGAATCCTAACTCGCCCCTGCTTTGgacatctagtgcactacatagggtgtagaaGCCATTACTCTATGTCATTCTATTTTTATCCTATTAGGTGTACGCTTATAGGTTCTACCTTGAGTGAAATACTGTTAAAATGGAAGTGTCCAGAAAGGCTCTTTAAAGCGACGCTATAGAAGAACCACTGCTTTTATTCCTGAAGAACATTTTGATTGATGGAGATTTAACCACCATTATGTGGAAGGACCTTTGTGATGGAAAAAGCTAATTAAGTTTATTGtggaaagaataaaaatggCTGAAGAATCATCAAGGAAAAGGGTTTTAGAGAACCAAAAATGGCTCTTAAGAAAAACCTTCTATTGTATTGctctgtaaaaaatatttaatagcaAGGGGGTAGGGCACAGAGTCCACAATTTCATACCCTACCTAGGGCACTGATTCTCCAATGACTCTGTATTGGACATCTAGTGCTCTAGATAGGGTGTAGAAGCCATCACTCCGTGTAGCTTACTTATATAAGTGGCTAGGAGCAATTTTTTATCCTATTAGGTGTACTCATAAAGGTTCTACCTTGGATTTAAAGGGAAACACATAAACCTTTCTTAAAAATTAAGGCATCTGAAAAGGTTCTTTATGAAATGATACCATGGAAGAACATTTTTTGGTTTCTGAAGATCCCTTTTAGAAAGGATCTTTGTGgtgtgaaatgtttattatatgtattatgcATTATACAATATAAATGGCTGAAGAATCATCATGCAAAATGTTCTTTAGGGAACCAAAAATGGCTCTTAAGGAAACTTCTATCCCAAAAACCTTTTCACGTTTATCACGCTTAAGAGTGTAGGGCACTGAGACAATGATTTCCTACCCTAAATAACGCACAGATTCTCCGGAAGCCATCATTTCATTCATACTAATTAGGCAGCAGGGATTCATTTGACATTTATAGCTAGTTGTTTTAGGCTAAATCCAAAATATCTCCTATATTAAAcctatagtgcactacatacaagattttatttcacatcttatgtagtgcacttaagACAGCAGGCATCTGGGATACAACCAATATGAAATCAATTAACCTTTTAATAGATTTGACAAACAGTCTCAACATAGTAGAGACTGCGGGAATGGTTACAaagcatgtcattttttttaaagcctcaAACGAGGTAACAGAAATTCATACAAATCATTGTTTTATCTGTATTCCTATTTTATCACTAGACCCTAATCTTTCTAAAACATCTGTGTTGTGCTTAAAAAATGTCAATATCCATGTCAAAGTGTTTATGTgtggaaatgtgtttatttttctatattgtatttataaaaaa

Function

symbol description
mnx1 Predicted to enable DNA-binding transcription factor activity and sequence-specific double-stranded DNA binding activity. Acts upstream of or within spinal cord motor neuron cell fate specification and type B pancreatic cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; endoderm; mesoderm; neurons; and pancreatic system. Human ortholog(s) of this gene implicated in Currarino syndrome. Orthologous to human MNX1 (motor neuron and pancreas homeobox 1).
mnx2a Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within spinal cord motor neuron cell fate specification. Predicted to be located in nucleus. Is expressed in several structures, including pancreatic system; primary motor neurons; rhombomere; spinal cord neural keel; and spinal cord neural plate.

NR:

description
motor neuron and pancreas homeobox protein 1-like

GO: NA

KEGG:

id description
K08025 HLXB9, HB9; homeobox protein HB9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947552.2 True 2414 mRNA 0.43 3 4739570 4746302

Neighbor

gene id symbol gene type direction distance location
LOC117597089 NA coding upstream 226107 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 252204 4479498 ~ 4487366 (+)
LOC117597057 NA coding upstream 308564 4417549 ~ 4431006 (+)
LOC117597055 LOC108261462,LOC108261092 coding upstream 331184 4395485 ~ 4408386 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 405403 4315778 ~ 4334167 (+)
LOC113547242 LOC108268241 coding downstream 27884 4774186 ~ 4789253 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 59352 4805654 ~ 4866411 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 133498 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 150666 4896968 ~ 4913622 (+)
LOC117597060 NA coding downstream 176349 4922651 ~ 4934918 (+)
G59329 NA non-coding upstream 40775 4677167 ~ 4698795 (+)
G59343 NA non-coding upstream 68110 4670980 ~ 4671460 (+)
G59342 NA non-coding upstream 69487 4669863 ~ 4670083 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding upstream 73115 4666012 ~ 4666455 (+)
G59338 LOC108268240 non-coding upstream 75104 4663611 ~ 4664466 (+)
G59478 NA non-coding downstream 203998 4950300 ~ 4950651 (+)
G59479 NA non-coding downstream 206069 4952371 ~ 4952598 (+)
G59483 NA non-coding downstream 211760 4958062 ~ 4958314 (+)
G59521 LOC108268222,LOC108268223 non-coding downstream 265618 5011920 ~ 5017802 (+)
LOC113547270 NA non-coding downstream 517714 5264016 ~ 5266014 (+)
G59366 ube3c other upstream 31172 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 86449 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 186532 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 345565 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 443105 4290618 ~ 4296465 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 200835 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 227893 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 433252 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 642066 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 833494 5579796 ~ 5596225 (+)

Expression


Co-expression Network