LOC113547296


Basic Information

Item Value
gene id LOC113547296
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5393877 ~ 5399388 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947565.2
aggaagttTAGTCCTCTTGCATGGACGTGAGGAAGGGGGACTAACCGGGGGACTTCAGTCTCGCCATGCCGTCTCCTAACGCGCGCAGGAACAGCGGTGTAGCGGTGGCAGGTAACGGAAGGCTCGAGCTACctgcctcctcttcctcctcttcctcctcaccCTTCTCTCCTGCCCGGTCCCGCGTGCTGGACTCTGTGTCACGCCGACGGGCCTCCAGCATCACGTGCGCTGCGTCTGCGCCGCCACCGGCGCTCGCGTTACCCGCGCGCCCGAGTCAGTCTCTCCCCGCCGTGGCGCTGCGCTCCCTGCTGGCTGTGGACGTGTGGCTCTCCCGGAGGATGGCGCTGTGCGCCGGGAAGGAGGCTCCTCTGGGCGGCATGAGGCCGCTGGTGAAGCTGGTGGAGTTTACCGGACACGCAGCGCCGTGGCTCTCCATCACTCTTTACCTTTTCATCTGCAGTGAAACCGCGGAGGAGCAAGAAGTCATGATCAACCTGTTCCTGGCGTTATTGTTAGACCACGCCCTGGTTAGAATAGTGAAGCGTGCTGTGAATTATCATCACTCGGAGTGGTTTGCCACTTTGCTTCCTCATCCTCACTCCTTCCCATCAGGCCACACGACGCGGGTTGCCATGTGCGCCCGTTTCCTGCAATCTCGCCTGCTGTCGGACTGCCCCATGCGGTTTGTGGTGCTGTCCTGGACGGTTCTGCTGGCTCTGACGCAGGTTCTGCTCGGTCAGCACAACGTGAGTGGTGTTGTCCTCGCTCTGGCCGTGGGCTCCTGTCACTACAGCGTGGTGGAGACGTGCTGGCTGTCTGTGGAGAGACTGCAGGACGTCCTGATCACTGCACTGGGGAAACATGTCACTCAGAGAGGCTGAGAAACACATGAGCGTTTTCATACACCACTGGTTCAActtttaactacacacacacacacagacacaaagcaTGGCTTcaaatgacattattaataaGCTGAATAATAAACTTTGTACGTGGACTTTGTATGGACAAACATATACTCAAGCCCAGGCCTGGAATAAATCATTTAAGAAGGCTTCTCAGAgaaacacatatacatatagctagtcatttttcttcttttagttagtttatttttcttttgttggcCATTTGACGTATACGACATCTTGGCAAACTTGCACAAATGAAACTAATCGCCAGTCTAGTTTCAATAATGCTGATTTCCTTCATagtcttgtgtgtgtatattgataAATACCAATCAGTCATAAATTTCCAAGCACATTCCCAGTACAGGTGATTTACCCTGATCCACACCCACACAACACCATAAAAAGCAAAGCTTACAAACagcagaaaatgtcaaaaagacaactaaatggtgaaagaacgctaaatcttccagtaatgcagctcagccactgcagcgcatcaGCTACCACTGACACGCATCAAGGCCCGGTTTTACACAGTGCAATTACATCAGACTTTTAAGATTATTCCTTGTCACAGTGTATGAGATCCCAATAAAACCTTGTCTGAATTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947565.2 True 1538 mRNA 0.51 2 5393877 5399388

Neighbor

gene id symbol gene type direction distance location
dnm3b LOC108268313,LOC108413145 coding downstream 36587 5308861 ~ 5357290 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 243655 5129697 ~ 5150222 (-)
LOC113547224 NA coding downstream 289751 5100415 ~ 5104126 (-)
LOC117597187 LOC108261662 coding downstream 368477 5020107 ~ 5025400 (-)
LOC113547303 LOC108268222 coding downstream 376028 5013348 ~ 5017849 (-)
fggy fggy coding upstream 11434 5410822 ~ 5426769 (-)
tada1 tada1,LOC106569412 coding upstream 35835 5435223 ~ 5442703 (-)
igfbp1b LOC108268024 coding upstream 196902 5596290 ~ 5602267 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding upstream 218475 5617863 ~ 5694235 (-)
LOC113547299 LOC108268057,LOC108440942 coding upstream 327202 5726590 ~ 5738222 (-)
G59839 LOC108267851 non-coding downstream 2809 5389640 ~ 5391068 (-)
G59838 LOC108267851 non-coding downstream 4579 5388430 ~ 5389298 (-)
G59833 NA non-coding downstream 15597 5378053 ~ 5378280 (-)
G59823 NA non-coding downstream 63976 5322501 ~ 5329901 (-)
LOC117597176 NA non-coding downstream 128768 5262484 ~ 5265109 (-)
G59843 NA non-coding upstream 8093 5407481 ~ 5412825 (-)
G59869 NA non-coding upstream 92638 5492026 ~ 5492374 (-)
G59865 NA non-coding upstream 155563 5554951 ~ 5555776 (-)
G59987 NA non-coding upstream 325137 5724525 ~ 5724761 (-)
G59992 NA non-coding upstream 326590 5725978 ~ 5726434 (-)
LOC113547297 NA other downstream 307520 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 448856 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 745997 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 822050 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 1137593 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 79154 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 500861 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1481994 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3053222 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3172108 8571496 ~ 8595625 (-)

Expression


Co-expression Network