LOC113547299 (LOC108268057,LOC108440942)


Basic Information

Item Value
gene id LOC113547299
gene name LOC108268057,LOC108440942
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5726590 ~ 5738222 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947569.2
TAGCCCCGCCCCCCGCCAGCAGATGGCAGTAACGAGCTTCCGGGTTTGTTTTGAAACTCgtggaagaaaaaacaaaaggagaATTTACAAACTGTTTACAAACTTTTAACTGCACAAGTCGTATCCGGCAGAACGACTCCGAGATGCTGATCCGGCAGCTGGCGCGGAGGCTCCTGCTCCCTCAGATGGATTATGGGAATCGGATCACAGTCCTGAGGGCTCTGAGCGTCGAACCCCAGCCAAAGTCAGATTTAGCAGAGTTTCGTGAGGTTTTCTCCAAGGCCAAGCACATCGCCATCATCACCGGAGCCGGCGTGAGCGCCGAGAGCGGGCTGCCCACCTTCAGAGCCGCCAGCGGACACTGGAGGAAGTGGAAGACACAGGATCTGGCAACCCCGCAGGCGTTTTCCCGTAACTCGTCTCGCGTATGGGAGTTTTATCATTACTGGAGGGAGTTAGCGCTGAAGGCTAAACCCAGCGCTGCTCACGTGGCCATCGCCGAGTGCGAGGCCCGTCTCAGACGGCAGGGCCGCTCCGTGGTGGTCATCACGCAGAACACGGACGAGCTGCACCGCCAAGCCGGCAGCAAACACATCCTCGAGGTCCACGgaagTGTTTTCAGGACGCGGTGTCTGAGCTGCGGAGACGTGGACGTGAATCATCACAGCCCTATCTGTGCTGCTCTGGAGGGTAAAGGTGATCCGGAGCCAAACTGCACCGATGCCGATATTCCTGTGGAAAATTTACCAAGGTGTGATGAGAGAGGCTGTGACGGTCTCCTGAGGCCTGATGTGATCTGGTTCGGGGAGACGCTGGACTCGCACGTCCTCACCAAGGTGGAGAAAGAGCTGGACGCCTGTGACCTCTGCCTGCTGGTTGGCACCGCGTCCGTCGTCTTCCCAGCGGCCATGTTTGCCCCCCAGGTGGCATCCCGAGGCGTTCCAGTGGCGGAGTTCAACATCCGGCCGCGATCCAGCATGTCTCAGTTCACtttttatttccaGGGCCGGTGTGCTGAGACCATCCCCATCGCTCTCGCACCTCACGAGTCTGAGCTGATGTGAGACTCTGATATACGTCTCAGAGACGAAGACGacctctgacctgcacagggGCCGCTGGTGAACAGACTGCTTTTATACGCCCTGAGAAAGGAAATACTGCCTCCCACTAGTGTCTCTGAGAGGCAGATTAACGGGGAAACGTTACACGAGTGTTTATAGGGAAGTAGAAAAGTCCCGTTTCATTTTTGCTGCAGTGTAAATGATCTCGTTATGATGCAGTGTGTGCACTTGAGAGGTTGTTTTATTGATCTGATTACTGAATTGTGAAAACGCAGCACCATTTCAGGGTACAggaactttctctctctccctgtccatTGAATTTGCTGTTTAATAAGATAGATAATGACATTTAACACTTTATATGCTCACTGAAATGGTCTGGGATATAAACACAATCCAGATAGTGTAAACAGATGGCGTGATCACGTACATAGTTTAGCTTTTGTTTACTTTACTCCAcagaataataagaaaaaaatgaaaagctaaAATCttgaaaagaaatgtgtgtaaaaactGAGTTTAAGCCTCAAAGAAATACACATTTGAAATCACTCCAAAGGTGCCAAGCacaatttttcttcttcatacaCAGTAACTCTAAAGTCTCTAAAGAGGATGTGGTCTAGAGACAGTAAGAGGAAGTGTAGTGTATATTCTTTAGaaataatttcagaataatttttttttcccttttgtacatctgcaaaaataataactttgtcccttttgcttttt
>XM_034304132.1
TAGCCCCGCCCCCCGCCAGCAGATGGCAGTAACGAGCTTCCGGGTTTGTTTTGAAACTCgtggaagaaaaaacaaaaggagaATTTACAAACTGTTTACAAACTTTTAACTGCACAAGTCGTATCCGGCAGAACGACTCCGAGATGCTGATCCGGCAGCTGGCGCGGAGGCTCCTGCTCCCTCAGATGGATTATGGGAATCGGATCACAGTCCTGAGGGCTCTGAGCGTCGAACCCCAGCCAAAGTCAGATTTAGCAGAGTTTCGTGAGGTTTTCTCCAAGGCCAAGCACATCGCCATCATCACCGGAGCCGGCGTGAGCGCCGAGAGCGGGCTGCCCACCTTCAGAGCCGCCAGCGGACACTGGAGGAAGTGGAAGACACAGGATCTGGCAACCCCGCAGGCGTTTTCCCGTAACTCGTCTCGCGTATGGGAGTTTTATCATTACTGGAGGGAGTTAGCGCTGAAGGCTAAACCCAGCGCTGCTCACGTGGCCATCGCCGAGTGCGAGGCCCGTCTCAGACGGCAGGGCCGCTCCGTGGTGGTCATCACGCAGAACACGGACGAGCTGCACCGCCAAGCCGGCAGCAAACACATCCTCGAGGTCCACGgaagTGTTTTCAGGACGCGGTGTCTGAGCTGCGGAGACGTGGACGTGAATCATCACAGCCCTATCTGTGCTGCTCTGGAGGGTAAAGGTGATCCGGAGCCAAACTGCACCGATGCCGATATTCCTGTGGAAAATTTACCAAGGTTGGCACCGCGTCCGTCGTCTTCCCAGCGGCCATGTTTGCCCCCCAGGTGGCATCCCGAGGCGTTCCAGTGGCGGAGTTCAACATCCGGCCGCGATCCAGCATGTCTCAGTTCACtttttatttccaGGGCCGGTGTGCTGAGACCATCCCCATCGCTCTCGCACCTCACGAGTCTGAGCTGATGTGAGACTCTGATATACGTCTCAGAGACGAAGACGacctctgacctgcacagggGCCGCTGGTGAACAGACTGCTTTTATACGCCCTGAGAAAGGAAATACTGCCTCCCACTAGTGTCTCTGAGAGGCAGATTAACGGGGAAACGTTACACGAGTGTTTATAGGGAAGTAGAAAAGTCCCGTTTCATTTTTGCTGCAGTGTAAATGATCTCGTTATGATGCAGTGTGTGCACTTGAGAGGTTGTTTTATTGATCTGATTACTGAATTGTGAAAACGCAGCACCATTTCAGGGTACAggaactttctctctctccctgtccatTGAATTTGCTGTTTAATAAGATAGATAATGACATTTAACACTTTATATGCTCACTGAAATGGTCTGGGATATAAACACAATCCAGATAGTGTAAACAGATGGCGTGATCACGTACATAGTTTAGCTTTTGTTTACTTTACTCCAcagaataataagaaaaaaatgaaaagctaaAATCttgaaaagaaatgtgtgtaaaaactGAGTTTAAGCCTCAAAGAAATACACATTTGAAATCACTCCAAAGGTGCCAAGCacaatttttcttcttcatacaCAGTAACTCTAAAGTCTCTAAAGAGGATGTGGTCTAGAGACAGTAAGAGGAAGTGTAGTGTATATTCTTTAGaaataatttcagaataatttttttttcccttttgtacatctgcaaaaataataactttgtcccttttgcttttt

Function

NR:

description
PREDICTED: NAD-dependent protein deacylase sirtuin-5, mitochondrial-like

GO:

id name namespace
GO:0036047 peptidyl-lysine demalonylation biological_process
GO:0036049 peptidyl-lysine desuccinylation biological_process
GO:0036054 protein-malonyllysine demalonylase activity molecular_function
GO:0036055 protein-succinyllysine desuccinylase activity molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947569.2 True 1805 mRNA 0.50 9 5726590 5738222
XM_034304132.1 False 1681 mRNA 0.49 8 5726590 5738222

Neighbor

gene id symbol gene type direction distance location
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding downstream 32355 5617863 ~ 5694235 (-)
igfbp1b LOC108268024 coding downstream 124323 5596290 ~ 5602267 (-)
tada1 tada1,LOC106569412 coding downstream 283887 5435223 ~ 5442703 (-)
fggy fggy coding downstream 299821 5410822 ~ 5426769 (-)
LOC113547296 NA coding downstream 327202 5393877 ~ 5399388 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 165974 5904196 ~ 5917960 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 193108 5931330 ~ 5949680 (-)
LOC113547282 LOC108267872 coding upstream 217905 5956127 ~ 5967304 (-)
ripk1l ripk1 coding upstream 234402 5972624 ~ 5986215 (-)
trnak-cuu_3 NA coding upstream 442665 6180887 ~ 6180959 (-)
G59992 NA non-coding downstream 156 5725978 ~ 5726434 (-)
G59987 NA non-coding downstream 1829 5724525 ~ 5724761 (-)
G59865 NA non-coding downstream 170814 5554951 ~ 5555776 (-)
G59869 NA non-coding downstream 234216 5492026 ~ 5492374 (-)
G59843 NA non-coding downstream 313765 5407481 ~ 5412825 (-)
G60092 NA non-coding upstream 47073 5785295 ~ 5851346 (-)
G60136 NA non-coding upstream 99912 5838134 ~ 5840474 (-)
G60151 phlpp1,LOC101073770,LOC106599727,LOC106569160,LOC107698933 non-coding upstream 159157 5897379 ~ 5899015 (-)
G60173 NA non-coding upstream 176121 5914343 ~ 5938132 (-)
G60181 NA non-coding upstream 231673 5969895 ~ 5972613 (-)
cldn1 LOC108268314 other downstream 232551 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 640233 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 781569 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 1078710 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 1154763 4560788 ~ 4571827 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 162027 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1143160 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2714388 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 2833274 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 2901246 8639468 ~ 9528825 (-)

Expression


Co-expression Network