LOC113547302 (LOC108268221)


Basic Information

Item Value
gene id LOC113547302
gene name LOC108268221
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4960991 ~ 4973092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947573.2
agattttggagcgtgccTGTGGGGatctgtgttcattcagccacaagaccatgagtgaggtcaggcactgatgtcggacGAGGAGGTCTGGGATGCAGTCACGTCAGGGCTCTGTCCAGGACACTCAAGCTCTTCCActcactccaaccttcacacaccatgtcttcacggagcCCGCTTTGTGCAAACCTGTCATGcgggaacaggtttgggcctcttcgTTCCAGCATACAAACACGTTTTAGACAATTGTGTTCTTCAGACGGTGTGGACAAGGAGcgcatatggttgtgatggtcaggtgttcacatacttttggtcatgtgtagtgtatactgtagtgtgtatgAGTAGTatgtgacttttattttgacagtaATCCTACCTAAATCCACCCGGATGTAAAAATGAGCTAATTTGGTTGTTACTGTTTCTGGTGTAACCCTGCAATAGAGAAGCACATGTTTAAACCCccaggaaataataataataataataataatagtaagaagaagaagaattgtCCAGCAACAATGGTTCGCGGTTGTGCTTTTCCCAGCTGCACCAACAAGATGACTAAAAGAAGTGGACTCAGTTTTCATCGTCTTCCTTTCCACACTCCGGAAATGCTGCACTTGTGGCTGCTCGCGCTGCGGATGGATGTAAACACCCCGGTTCCTAAACTGCGCGCTGCTGATCTGCGGGTGTGTGGAGCTCACTTCTCAGACGAGGACTTCTTCACAGAAACCGCCCGCAAAACCACACGCAAACTGCGGTGTCTGAAGAGATCAGCTGTGCCTCACTCGGAGCTGGGGCATCACTGGGGCATCCCTGACCCTCAGgATTGTAACCTAAAAGATGAGCCGCGTCCAGTGATTATAGGACAGTATGAGATTGTTACAGTACCTCAACCTGATCACAAAGCTGTCAAGAGCCTTCAGCCTTCTTATCAAGGAACTAGCATTTTTAAGAGTAGTGAGGTGctggtaaacacacactgtctgctGGAGCTCTTTCAGTTCTGCTGGCTTTGTCATAAAGAGTGCTGTATTACCATTGAGGGCAATGAGAAGCTGTTTTCAGTCACCCAGGACTGCCAGAATTGTGGCCACCACAGAGACTGGAGGAATCACCCGCCTTCAGCCGAGCCTGCAGAAACATATCATAATGAACCCAAAGACCACGTAGAGACATTTGATGAAAAACGTGAGGATAATGATGATACAACTTCATACATAGAGGTAGAACACACGTTGGAGCCTGGGGATGAGGATAGTGAGGAGGTTGTGGTCCAGATTGGGTCATCGGATCATGAGGGCAGTGAGCAAAGCTATGAGCAGATGTTCATCGAAACAGATGGGTCATATTTTTCAAGTACAGAAGAGGAAACAAGCTTACAggaagagatgatgatgaagaagaagaagaagaagaagaaaaatctaaaaGAGAAGACAGTTCGGATGAGTGGCAGCCAGATTTGGGTGAAGAGGCCACAGACTCTGATGTTTCCATGGATGAAGACCTGTTCACAGCTTTAAAGGAGGATGGTCAGGGTAACCTTGCGGTGTGGTGTACACAATGTGGGACCGAGGCCTTGCTCTCCTGTTCTGTGCTTCGACACAAAAAAGTATTCTGCTGTGCTCAGTGTGATGCTGGCGGTGATATTGAGATGCTTAGTTTAGAAAAAGTATCTGTTCGTTTTGATGACTTGGCCAGTTTTCAGAGGCATGCTGAACAGGAGCACGGAGTCAAGACATTCTATAAGTTGTGTCAGGAATGTGGCAAGTTTGTTATAGCAGACCCTCAAACCAAAGGTTTGAAAGAACATAAATGTGAACAAAAGATCAAATTTATTGTCTGTCCAGAGTGTGGAAAAAGATTCCTCACTGAGGTCGGCTTAAAGAGGCATTGCACTAAACTGCATGAGGATGCCGACCACCCATGTAAATACTGTTTGAAGGTGTTTAAGAACAGACCAGCAAAATTGGAACATGAGCAGACTCATCCTAAGGAAAAACAGCCATACAGCTGTCCAGACTGTCCAGAGAAATTTGACAATCTTTACAAACGCAACAGCCACGTCAGATCCCACCGGGGTCCATATAAGTATTTGTGTGATATATGTGAAAAGCGCTTTAAAGACCTCCACAGACTGAGGAGGCATAAGCTTATCCACTCTGGAGAAAAACCTTTCAAATGCCAAGTGTGTGAGCGTTCCTTTAACCAAATGGAAAACCTCACTTCCCACATGCGAGTCCACACTGGAGAGAAACCTTTCATGTGTGAGCAATGCGGAGAGTGTTTTAACCACAACGTCAGTCTGAAGAACCACAAGCAACGACACCATGACTTGGTTTTGAGTCCAGAGGAAGACGAAACAGGGTGAACTAGAGAATAAGGAACTGAATACAGCGGTAGACGTTCCATAGTAAAAGTCTAGACCACatgattaaaatgaatacaGTGAAACATGATACAA

Function

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947573.2 True 2482 mRNA 0.45 5 4960991 4973092

Neighbor

gene id symbol gene type direction distance location
c8a c8a coding downstream 82762 4866481 ~ 4878229 (-)
trnar-ucg_1 NA coding downstream 151127 4809792 ~ 4809864 (-)
nom1 nom1 coding downstream 191120 4758649 ~ 4769871 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding downstream 231869 4678739 ~ 4729122 (-)
LOC113547274 LOC108268240 coding downstream 288806 4663140 ~ 4672185 (-)
LOC113547301 LOC108268219 coding upstream 1170 4974262 ~ 4982521 (-)
LOC113547304 LOC108268219 coding upstream 19497 4992589 ~ 5017807 (-)
LOC113547303 LOC108268222 coding upstream 40256 5013348 ~ 5017849 (-)
LOC117597187 LOC108261662 coding upstream 47015 5020107 ~ 5025400 (-)
LOC113547224 NA coding upstream 127323 5100415 ~ 5104126 (-)
G59598 NA non-coding downstream 3070 4957717 ~ 4957921 (-)
G59559 NA non-coding downstream 46540 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 203226 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 282255 4677165 ~ 4678736 (-)
LOC117597175 LOC108268239 non-coding downstream 364460 4580941 ~ 4596531 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 149044 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 206653 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 219068 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 289392 5262484 ~ 5265109 (-)
G59823 NA non-coding upstream 349409 5322501 ~ 5329901 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 15970 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 313111 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 389164 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 704707 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 750885 4171199 ~ 4210106 (-)
LOC113547297 NA other upstream 109716 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 505450 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 927157 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1908290 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3479518 8452610 ~ 8551855 (-)

Expression


Co-expression Network