LOC113547303 (LOC108268222)


Basic Information

Item Value
gene id LOC113547303
gene name LOC108268222
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5013348 ~ 5017849 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947577.2
CTACCAGcacaaggaagaaaaaaagcatcGAAGAAAACTTTACATGGCGAAAGAAACACCAGTTTTCAAGCAAGACCAGAGCTGAGACTCCAGCTCCAGCATGTCGTGGAGGTGTAGTGTCCGAGGGTGTGGGAAACGCAATCAGGCCAAAGCTAAAGATGTTGTTATTCACCGTTTCCCTGAAAAAGACTTGGAGCTCTGCAGTAAATGGTTAGCGGCTATCGGGAAGGTTGTGAATAAAACGGAGAGGAAATACGCGTCTTTCCGAGTGTGCAGCCAGCACTTCAGACCTGACGACTATGAGAGGGATTTGAAGGCGGAATTATTGGGATGTCCACCAAAAAAGGTCTTAAAGAAAACAGCAATTCCGTCTATTTTCCAGACTAAACGAAAGCCAGGCAGAAGGCCCTCTCACACTCCAAAGAAAAGTCAACCTGAGGTGTCTTCTGAGAAAGAAAATGCACCTACTGCACTCTCAGCATGTTCTGAGGCAGAGGAGATGTCATGGCTTAAAGctATTAAGAGCCTTCAGACTCCTCAAGGATCTAACATTTTTAAGAGTCGTGAGGTGCTGGTGAACACCCAGTGTTTGCTGGAGCTCTTCCAGTTCTGCTGGCTTTGTCAGAAAGAGTGCTGTATTACCATTGAGGGCAACGAGAAGCTGTTTTCAGTCACGCAGGACTGTCAGAGTTGTGGCTACCACAGAGACTGGAGGAGTCACCCGCCTTCAGCCGAACCCGCACACACCTTTCATAAAGAGGCAGAACATGCACCGAAGCATGAAGagGTTGTGGTTCATACTGGGTCTTCAGCTAACAAGTGCAGTGAGCAGAGCCATGAACAAGTGTTCACTGAAGAGGATGGCTCATACTTATCTAGCGAGGATGAAGAAGCAAGTCTGCAGGAAGAGGAAGTTAAGACCAAAAAGAGGAAATCTAAGGGGCAGGACAGTTCAGATGAGCAGGAACTACATTCAGATGCAGAGGCCACAGACTCTGATGTGTCCATGGATGAAGACCTGTTCACAGCTTTAAAGGAGGATGGTCAGGGTAAACTTGTGGTGTGGTGTACACAATGTGGGACCGAGGCCTCGCTCTCCTGTTCTGTCCATCGACACAAAAAGGTGTTCTGCTGTGCTCAGTGCAGTGAAGGTgacaacattaaaacacatactTTTGAAACACTACGTATTCGGTTTGATGACGTCGGCAGTTTTCAGAAACATGCTGAACAGGAGCACGGATCCAAACCATTCTATATACTGTGTCAGGACTGTGGCAAATTTGTTATAGCAAAAAAAGAGCATGTATGTGAACATAAAATCAAGTTTATCATCTGTCCAGAATGTGGGAAAAGATTCCTCACTGAGGGCGGCCTAAAGACGCACTTCACTCAGCTCCATTCGGATTATGATCACCCGTGTAAATACTGTCTGAAGGTCTTCAAAACCAGGTCTTTAAAACTGGAACATGAGCAGACTCATCCTAAAGAAAAACAGCCATACAGGTGTCCAGATTGTCCAGAGAAGTTTGACAATATTCACAAACGCAATAACCATGTTAAGTCCCACCGAGGTCcacataaatatgtgtgtgatgtatgtgagAAAGGCTTTAGGGATATTAACAGGCTGAGGAGGCATAAGCTCATCCACTCTGGAGAAAAGCCTTTCAAATGCCAAGTGTGTGAGCGTTCCTTTAACCGAATGGAAAATCTTGGTGCCCACATGCGCGTCCACACTGGAGAGAGGCCTTTCATATGTGAGCAATGTGGAGAGTCATTCAGTCACAACGTCAGCCTGAAGAACCACAAGCAACGACACCATGACTCGAGTTTGACTCAAGAGAAAGAAGTGCTAAATGATATAGAGAAAGAAGTGCTAAGTGATGTAGAGAATAAGGTGAAAACAGCAGTGGGGGTTCCATAGTAAAGCTCTGATTGCTTTACTGCTGATGGAGCAACAGTGCAGTGTTCTTCACATAACTTTCAAGTTCTCTACGACTTTGGTCCTGGCTCCAGGAACCAGGAACAATATCTCTCCAAGGAAATCCCAAAGAAACTGAATATCATTCTGACACTTTCTATCTGCAGACCATGTGATACATTTTGAAAGCAGCTCTGTTTGCTATTCCGGTACTAACTTAGTGGTATTCATAAAGCATGGCCTGTGTACTGTGTAACAGCATGATAAAATGTTTATCCGTGAAGACTACTGCAGTGTTTTTGTAAAGCACTTAAATAAACCAAACAGGAGGCA

Function

NR:

description
PREDICTED: zinc finger protein 93-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947577.2 True 2257 mRNA 0.45 5 5013348 5017849

Neighbor

gene id symbol gene type direction distance location
LOC113547301 LOC108268219 coding downstream 30827 4974262 ~ 4982521 (-)
LOC113547302 LOC108268221 coding downstream 40256 4960991 ~ 4973092 (-)
c8a c8a coding downstream 135119 4866481 ~ 4878229 (-)
trnar-ucg_1 NA coding downstream 203484 4809792 ~ 4809864 (-)
nom1 nom1 coding downstream 243477 4758649 ~ 4769871 (-)
LOC117597187 LOC108261662 coding upstream 2258 5020107 ~ 5025400 (-)
LOC113547224 NA coding upstream 82566 5100415 ~ 5104126 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding upstream 111848 5129697 ~ 5150222 (-)
dnm3b LOC108268313,LOC108413145 coding upstream 291012 5308861 ~ 5357290 (-)
LOC113547296 NA coding upstream 376028 5393877 ~ 5399388 (-)
G59598 NA non-coding downstream 55427 4957717 ~ 4957921 (-)
G59559 NA non-coding downstream 98897 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 255583 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 334612 4677165 ~ 4678736 (-)
LOC113547239 NA non-coding downstream 421580 4590344 ~ 4591768 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 104287 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 161896 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 174311 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 244635 5262484 ~ 5265109 (-)
G59823 NA non-coding upstream 304652 5322501 ~ 5329901 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 68327 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 365468 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 441521 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 757064 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 803242 4171199 ~ 4210106 (-)
LOC113547297 NA other upstream 64959 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 460693 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 882400 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1863533 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3434761 8452610 ~ 8551855 (-)

Expression


Co-expression Network