c8a (c8a)


Basic Information

Item Value
gene id c8a
gene name c8a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4866481 ~ 4878229 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947580.2
TACCCTGACTGATATTGACAAGTGGCTCTGAATCACATCTAGCTTTAGCGATCATCTGAAAACCAGCCGTTTCAGCCATGAGACAGTTTTTGCCTACTTCTGGGTCTTGTGTTATTTTGTCTCTGCTTTGTTTCAGCCAGTTTGCTGAGGCCGCTGGTTTCTTCTGGGGCTCATCTCATAACAGGACTAAGGTCTCTTCCAGAAGAACTCGAGGTGCTGAATCACTCATTCCCAGAGACTGTAAGCTGAAGAGCTGGACATCATGGACGCCATGCAACTCCTGCACAGAGAAAACGGTGCGTTTTCAGTACGTGGAGAGACCCTCGCAGTTTGGAGGCACGAGCTGCGTGCACAGCCAGTGGGATGAGAAACTGTGTCCGGTTCAGGGCGAGTGCGAGCCTCAGGATGAGTGTGGAGACATGTACGCGTGCCCTGAAACAGGACGATGCATTAGTCAGCATCTTCTCTGCAACGGTGATTGGGATTGTGAGTTCGGCAGTGACGAAGACAACTGCGAGGACACGAAAAGCCCAGAAACCAAGTGTGTCGGCATGCTCTCCATCCCGGGAGCGCACAAGGCCACACAGGGCTATAATGCTCTGTCAGACGTTTTTGTGAACCCCGTTCTGGACCCTAAATACTTCGGAGGCATATGCGAGTACATCTACAACGGAGAGTGGAGGGAACTGACGTATGACTCCTTCTGCGAACACCTTCACTATAGCGATGATGAGAAATATTTCCGGAAGCCGTATAACTTCTTATCATATCGTATGATGGCACATTCTCTCAGCGAGGGATCAACCGAAGATTACAGTGATGCTGCGAGCTTATTAAACGCGCAGAAAACAGAGTCTTCCTCCAACTGGGGTGTGAATATTGGCATCATGTATGTGGAAGCTGGACTGTCTGGGAGTCGTGCAGAGACAGTACTGAAAAACATATCACAGTACGACAGTAAGGAAGTGCAGTTTGTTCGGCTGCTCTCGACGGTGGAAACAGCGCAGTTTAAGATGAGGAGTCGGGATCTGATGCTGCACGAGGACATGCTGCAGTCGCTGATGGAGCTGCCTGAGAAATACGACTTTGGCGCTTACTCACGCTTCATCAGTGAATACGGCACTCATTATGTAACGCAAGGCATCATGGGAGGCATTCTGGATTACATAGTGGTGCTCGACAAACAGGTCATGGCAAGACAGAAGCTGGAGACTCGGGATGTAAGCAAGTGCCTCGGCATTTCTCTGGGCATCTCAAAAACCATCGATCAGGGCTTAAGTGGCAACCTTACAGTAAAACACGAATCATGTGGGAAAACAGGAGAACTGAATCGAGAGAAGCAAGAAAACACTGGTCTGATCAAGGACGTGATCGGCTTTGTGAAAGGAGGCATCACAGGCCCCAGCGCCGCTCAGTTAGTCATCCGTAACGCAGAGACTTACAGGGCCTGGGGCAAATCTCTCAAATACAACCCAGCCGTCATTAAGTTTGAGGGTCTGCCCATCTACGAGCTGGTGCGCTTCAGCACGGCGGCGGCTCAGGCACGCACCAGGCTGCCGCTCCTGAAGCAGGCGTGGGAGGAGTACATGCAGGAGTTCAACCCGTGCCGCTGCGCCCCCTGCAGGAACAACGGCGTGCCCGTGCTCACGCGTACGTCCTGCAGCTGCCTCTGCAAGGCGGGATACGACGGCCTCGCCTGTGAGAAGGCCGAACGCAAACCTGGTCCTATTCATGGAGCGTGGAGCTGCTGGAGTTCCTGGTCTTCCTGCGCGTCTGGAACAAAGACACGAAGACGAGAGTGTAACAACCCCGCTCCTGAAGCCAACGGCTTCCCGTGTACAGGAAACTCGGTGCAGACGAAACGCTGCTGACACGAGCGTGTACAATCTCTGACTAAAATGTATTCTATGGAAAGGTTTTGATTGGTTGGAGAATCTGGAAGTTTCTGGATGAATCTAATAATCAATTAAAAGCTTTACACCATTA

Function

symbol description
c8a Predicted to act upstream of or within complement activation, classical pathway; cytolysis; and innate immune response. Predicted to be located in extracellular region. Predicted to be part of membrane attack complex. Is expressed in chondrocranium; cleithrum; and liver. Human ortholog(s) of this gene implicated in type I complement component 8 deficiency. Orthologous to human C8A (complement C8 alpha chain).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K03997 C8A; complement component 8 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947580.2 True 1986 mRNA 0.51 11 4866481 4878229

Neighbor

gene id symbol gene type direction distance location
trnar-ucg_1 NA coding downstream 56617 4809792 ~ 4809864 (-)
nom1 nom1 coding downstream 96610 4758649 ~ 4769871 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding downstream 137359 4678739 ~ 4729122 (-)
LOC113547274 LOC108268240 coding downstream 194296 4663140 ~ 4672185 (-)
LOC113547271 LOC108268229 coding downstream 206101 4650694 ~ 4660380 (-)
LOC113547302 LOC108268221 coding upstream 82762 4960991 ~ 4973092 (-)
LOC113547301 LOC108268219 coding upstream 96033 4974262 ~ 4982521 (-)
LOC113547304 LOC108268219 coding upstream 114360 4992589 ~ 5017807 (-)
LOC113547303 LOC108268222 coding upstream 135119 5013348 ~ 5017849 (-)
LOC117597187 LOC108261662 coding upstream 141878 5020107 ~ 5025400 (-)
G59416 NA non-coding downstream 108716 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 187745 4677165 ~ 4678736 (-)
LOC117597175 LOC108268239 non-coding downstream 269950 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 274713 4590344 ~ 4591768 (-)
G59385 NA non-coding downstream 305971 4559733 ~ 4560510 (-)
G59598 NA non-coding upstream 79488 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 243907 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 301516 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 313931 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 384255 5262484 ~ 5265109 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 218601 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 294654 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 610197 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 656375 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 946350 3894592 ~ 3920131 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 50131 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 204579 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 600313 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1022020 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 2003153 6881382 ~ 6899227 (-)

Expression


Co-expression Network