adcy1b (adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332)


Basic Information

Item Value
gene id adcy1b
gene name adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5617863 ~ 5694235 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947581.2
TTTTATCCCGACTCCACATTGCGCAGGCGTGATCCACTCCGAGGCGCTCGGTGCACATTCTCCTCTCACTcgcacttcttcttcttcttcttcttcttcttcctcatgtaCAGACAGCAGGCAGGAACACAAACTCCCTCACGGCgcacttttatttctctctctctctctctctctctctctctccggagGGAGTGTGATGTGATGCGCGCTCCTGCCGTCCCCTCCAAGACCGGATCCTCAGTCGGTGCCTCCGCCACGCCGCCGCTCGGCTCGTGAATGGCCCTGACATGGAGGAAGTCCCGTTTCAGAAAGTCAAGACGCGGCGGAAGCGGAGCCGGCGCTGTCCGCCCGGTGTGCCCGTGACCGCCATCGCGTGCGAGGACGAGTTCGACTGCAAGGAGCTCGAGTCGCTGTTCCGCACCTACAACCTGAAGCTGGAGCAGACCTCGGCGCTCAAGGCGCTCGCCGTGCTCGCGGCGCTGGCGTGTGCGCTCGCCGCGCTCGAGGCGCTCTCCGGCCCGGGCCTGGCCGTCGCCAAGGCGTCGCATCCGGCGCACGGCGTCGTGTTCGCGTCGCTCTTCGTCGTGGCCAACGTCAAGTACCTGCGCGTGGGGCAGCTGCAGCAGATCGTCAGCCTCACGCTGCTGTTCGCCTTCACCTTCGCGCTGCTCTGCTGCCCGTTCCCGCCCGTGGCGCCCGGTTCCCACGCGCCGGCGCCGCCGCCCGAGCACGGAGTCTGGCAGCTCGCGCTCGTCACCTTCGTGGCGTACGCGCTGCTTCCGGTGAGGACCCTGCTGGCCGTGACCTTCGGCATCATGGTGGCCATCTCGCACATCGTGGTCACGGCAACGTCGGTCACAGCCAAGACGCACAAGCTGTGGAGAGCGctGGTGGCCAACACGGTGCTCTTCACCAGCGTGAATCTGTCCGGTCTGTTTGTGCGGATCCTCACCGAGCGTGCTCAGAGAAAGGCCTTCCTGCAGGCACGCAACTGCATCGAGGAGCGACTGCGCATGGAAGACGAGAACGAAAAGCAGGAGCGACTGTTGATGAGCCTCCTGCCCAGGAACGTGGCTATGGAGATGAAGGAAGACTTCCTGAAACCTCCTGAACGGATTTTTCACAAGATCTACATCCAGCGCCATGACAACGTCAGCATCCTGTTTGCGGACATCGTGGGCTTCACCAGTCTGGCGTCACAGTGCACAGCTCAGGAGCTGGTGAAGCTGCTCAATGAGCTCTTTGGAAAGTTCGACGAGCTCGCCACAGAGAACCACTGCCGGCGCATTAAGATCCTGGGCGACTGCTACTACTGCGTGTCAGGACTGACCCAGCCCAAAACAGACCACGCCCACTGCTGCGTGGAGATGGGTCTCGATATGATCGACACCATCACGTCAGTGGCGGAGGCGACGGAGGTGGATCTGAACATGCGTGTGGGTTTACACACGGGCCGCGTGCTCTGTGGCGTTCTGGGGCTCAGGAAGTGGCAGTATGACGTCTGGTCCAACGACGTGACGCTGGCCAACGTGATGGAGGCTGGGGGGCTACCTGGAAAAGTGCACATCACTCGCTCCACGCTGGAGTGCCTGAATGGTGACTACGAGGTGGAGCCAGGAAACGGGAGTGAGAGGAACGCCTTCCTGCAGAAACACGACATCGAGACCTTCTTTATAGTGCCGTCTCACCgcaggaagATCTTTCCTGGACTGATCCTTTCTGACATCAAACCTGCCAAAAAGATGAAGTTTAAAACGGTGTGCTACCTGCTGGTGCAGCTCATGCACTGCCGCAAGATGTTCAAGGCTGAGATCCCCTTCTCCAACGTGATGAACTGCGAGGACGGGGACAAGAGGAGAGTTCTGCGCTCAGCTCCGGAGAAGCTGCGTAATCGGACCTCGGTTTCAGCCAACGTGACCCAGAGCAGCCCCGGCACACGGGTCAACCGCTACATCGGCCGTCTGATTGAGGCGCGTCAGACAGAGTCGGACACAGCTGACTTACACTTCCTCACGCTCATGTACAAGTGCTCAGAGCGGGAGAGGAAGTATCACCTCATCCATGACGAGTACTTCACCGGCGCCGTGGTGCTGTCACTAATCCTCGCTGCCTTGTTGGGCCTTGTCTACCTTCTCATCATTCCACAGGGGACAGTAGTGTTGGTGCTGCTGGTTTTCTGCATCTGTTTCCTTGTAGCTTGTATCATGTACCTTCATGTCACTAGAGTGCAGTGTTTTCCCGGGTGCCTCACCATTCAGATCCGCACGGTCCTGTGCGTGCTAATAGTGCTGCTAATCTACGCTGTGGCACAGGCGTGTGTGATGGGCTGCATGCCCTGGCTCTGGTCCTCCACCTCCAACACCTCTATAGTGATCATAGACATGGTGGGCGGAGCTAACCGCACCATGCCGGAGCTACCGTGTGACGGGGTGCAGTACGCCTTACTGGCGTGTGTGGTAGCCACGGTTACCATGGCGCTGTTCCTGAGAGTGTCCTGGCTGCCCaagctgctcctgctgctcaTGTTGGCCGTCAGCTTCATCACCGTGCTGGAGCTGAGCGGATATCGCCGAACCGTGACCGGTGCGGGTGTGGGGTCACTGAACGTTCGCTCGTATGAGCCCATCctctctctgctgctgttcTCCAGCGCTCTGGCCCTGCACTCACGCCAGCTCGAGCTCAAACTGCGCCTCGACTTCCTCTGGGCCACTCAGgctgaggaggagagagacgGTATGGAGAAGGTGAAACTGGACAACAGGAGGATTCTCTTCAATCTGCTCCCAGTTCACGTGGCTCAGCACTTCTTAATGTCCAACCCCAGGAACATGgATCTGTATTACCAGTCGTACTCCCAGGTCGGCGTGCTCTTCGCCTCCATTCCCAACTTCAACGACTTCTACATCGAGCTGGACGGAAACAACATGGGCGTGGAATGCCTGCGTCTCCTCAACGAGATCATCGCAGATTTCGACGAGCTCATGGACAAGGAATACTACAAAGACATTGAGAAGATCAAAACCATCGGCAGCACGTACATGGCAGCGGTGGGTTTGGTTCCCACGACAGGCAGCAAGGTTAAAAAGTCCACTTCGGCACACCTGAGCACAATAGCAGACTTCGCCATCGAAATGTTCGACGTCCTTGATGAAATCAACTACCAGTCTTACAATGATTTTATCCTGAGAGTAGgtATAAACGTAGGTCCAGTGGTGGCTGGTGTTATCGGGGCTCGTAGGCCTCAGTATGACATCTGGGGCAACACGGTGAACGTGGCCAGCCGTATGGACAGTACCGGAGTCCCGGGAAAGATCCAGGTAACAGAGGAAGTGCACCGCCTGCTGCAGAACGACTACGACTTGGTGTGTCGCGGCAACATCAGCGTAAAGGGTAAAGGTCAAATGGTGACCTACTTCCTGGAGGGCAGGTCTCAAGGCGCGGGTCCGAGGGCACCTGAGCGCCGCAGGAGCACGTATGCAATGGGCCGTGCTGCCAGGGTCGGGGTTGGATCTGcacaaagctccgcccacaaCCCCGCCCACGGTCGTCCTGCGTCTTATATTGTGCACGAGGAGGATGGTGAGGAGGACACtgaagaggaggaaggagaggTTTAAGATGAACAGGGGTGAAGAGGGAAAGAGTGTCAGTATGGAGCGTCAGAAAGGGGCCGCTCCATTATCTTTGCGGGATTTTCTTCTGACTCAGTGGAGCGCCGACGAGCACGAGGCGTTCGGCCCCGAAGGTTTTACAAACTACAAGGATAAGTCTGCGATGAGAAATGTGGAAAGAAGGATCTGAACGATGGAATTTTGTCTTCCCTTTCTAAGTGAATGATCACCTGCTTCGGGTTTTAGCGACGGAAATACTTTGTTCTTCTTTTCGGTGTTTAGATTTCAATCTGCACACTCGTCTTTTCCAATCAGAGGCACGGCTGGGGATTACAGACACCCTGTTTAGTGGGTGATTTTTGTGCACACATAAAAGGAACTCGTAAAGCTTAAAGTcgattatttacaatatttacatcaGGACtgattttttatgtattatatgcCAAGACTACCTGATCTGCTGTAAATACTTAGATGTTCTATAAAATTTGTGTACTTTTTGTATGCTAATCAGTGAGGTTGAGTGGAGCcgagtgtgtatgcatgtgtttcAGGTGTAATGAAGATAGCAcagatgacattttaaaagcaatttaTCAATTAAGCGATAGGCTttataggctttttttttcgtTGTTGTTGGTAATTTCCGGATCTTTGCGTAGCTGTTGATTAATCAGGGAGGGTGACCAGCACCCAAACTGCTCTACTTCATTTGATATTTTTCAGGTTATGCGACTTGCCTTGCTGCACCGACAACTTTTCTAACGTGAGATTTGTGGAACTTTCTTATCAGGGCACTTCTATTAGACGTTATAAACGGACTTAACACGAGTAGATGCAAATACAAGGACACACTCAGCACCAACGAGTTCATAACGTCAAAGCTAACAATGGACTAGGAACGCTATAGACGTTCTCTGATCCATGAAGGAAGTTACGATTACACAATCTTCGGTTCATCATTGCATTAattcatgaataaaataatcatgaGTCATGTATCGCTGGTTTAAAACTTTGTTAACACGAAAAGgaatattagcaaaaaaaagtaCCAGTGATGATTAGCATATTCTGAATTTTGGACCTAATTTAGCTTTGTTTGTCTCTTGCTTTCTTCGAGGCATGTTTTTGTGCTGGTCATGAGGAAACGAAAGTGGGTTAGGAAATATTGGAGCGTACAGAGGGAACGTTTGCACTCTGAAGGCAATGACGTCATGTTGAGCGGAGTATCTCACCCATACACAGGTATATAAAGTCACAGGGTGCTTTCACATCTGCAGTGTTTATTCATGTGTTCTCTGCCTCTGTGTGGTTCTTTAGACATTTTGCAAT

Function

symbol description
adcy1 Predicted to enable calcium- and calmodulin-responsive adenylate cyclase activity. Predicted to be involved in several processes, including cAMP biosynthetic process; cAMP-mediated signaling; and cellular response to forskolin. Predicted to act upstream of or within axonogenesis and long-term memory. Located in plasma membrane. Implicated in autosomal recessive nonsyndromic deafness 44.

NR:

description
PREDICTED: adenylate cyclase type 1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0016199 axon midline choice point recognition biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG:

id description
K08041 ADCY1; adenylate cyclase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947581.2 True 4958 mRNA 0.54 20 5617863 5694235

Neighbor

gene id symbol gene type direction distance location
igfbp1b LOC108268024 coding downstream 15596 5596290 ~ 5602267 (-)
tada1 tada1,LOC106569412 coding downstream 175160 5435223 ~ 5442703 (-)
fggy fggy coding downstream 191094 5410822 ~ 5426769 (-)
LOC113547296 NA coding downstream 218475 5393877 ~ 5399388 (-)
dnm3b LOC108268313,LOC108413145 coding downstream 260573 5308861 ~ 5357290 (-)
LOC113547299 LOC108268057,LOC108440942 coding upstream 32355 5726590 ~ 5738222 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 209961 5904196 ~ 5917960 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 237095 5931330 ~ 5949680 (-)
LOC113547282 LOC108267872 coding upstream 261892 5956127 ~ 5967304 (-)
ripk1l ripk1 coding upstream 278389 5972624 ~ 5986215 (-)
G59865 NA non-coding downstream 62087 5554951 ~ 5555776 (-)
G59869 NA non-coding downstream 125489 5492026 ~ 5492374 (-)
G59843 NA non-coding downstream 205038 5407481 ~ 5412825 (-)
G59839 LOC108267851 non-coding downstream 226795 5389640 ~ 5391068 (-)
G59838 LOC108267851 non-coding downstream 228565 5388430 ~ 5389298 (-)
G59987 NA non-coding upstream 30290 5724525 ~ 5724761 (-)
G59992 NA non-coding upstream 31743 5725978 ~ 5726434 (-)
G60092 NA non-coding upstream 91060 5785295 ~ 5851346 (-)
G60136 NA non-coding upstream 143899 5838134 ~ 5840474 (-)
G60151 phlpp1,LOC101073770,LOC106599727,LOC106569160,LOC107698933 non-coding upstream 203144 5897379 ~ 5899015 (-)
cldn1 LOC108268314 other downstream 123824 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 531506 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 672842 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 969983 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 1046036 4560788 ~ 4571827 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 206014 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1187147 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2758375 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 2877261 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 2945233 8639468 ~ 9528825 (-)

Expression


Co-expression Network