nom1 (nom1)


Basic Information

Item Value
gene id nom1
gene name nom1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4758649 ~ 4769871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947582.2
AGcggaagcagaaaaaaacaaagatggcTGCCTCCATCTTCCATGCGCGTGCTGTGTTTTGGTCTGAACGGcgcacttttctttttaatctgcagctaataaaactgtaaaataatttattttacgCGTTTATATATCCAGAACATAAATATGAAACCTAAATTCCAGCGAAAAGGAGGCGGAAGAGGGAAACAGTCCAGAGACAAGCTGCACAAATTCATGGTTTCTGTCCACAACTTTGTCCAGAGTGAAGCAGGACATGATGAACTGGAGTCCCACGGCCACATGGAGATGCTCGCTAAAAGGAAAAGTCGAAAAGAAATGCGCAAAGAGAAGCGgaagctgaagaagaagaagaagatgaaggcAAAGCAGCCTGCAGAGGAGAGTAAACAGAGTGGCAGTGTGGATGCTGCTCCACAGAAAGCTCCACCAGCCATCAAACCCAGACCCCAGTCCAgctctgctcctgctcctgctcctgctgagCTCAGTGACAAGGAGAAGAAGCCGAAAAGAAAAGTGCATTTCGAGAAAACTTCTCCTCAGCCTGAGAAGAAAGCCAAAGTGCAGACCATGAGGAAGAAAGCTCTGATTGAAGCCAATGAGCTGGAGGACAGAGAGATCAAGAAGCTGGAGAAACGGCTTGGTCTCCATAAGAGGAGAAACAAGAAGAGCCTTCCGCAGTCCTTCATCAGCGACGGTCTCGATTACATCCTGGGCATTCTGGAGCCTGGAGGAGCTGCTTTATATGACAGCGATGAGGACGTGGATTCAGCCAAAGCGAAGAACAGGCTGGAGAAGTTAGAGGAGATcagtgaggatgaggaggatgaagatCACGATGAGTCAGAGCACACgggtgaggaggaggatgagatgaaggaagaagaggaggaggaggatgagatggaggaagaagatgaggaggaggaggatgaggagattGAAGGAGAtggggaggaggaagaagaaggagaagaaaaagaagaagaagaagaggaggaggaagagggagaagaaaatgaagaggACGAGGTAGAGGGAGAAGATGCATCAGAAGAAGAGGATGAGCAagatgatggagatgaagaAAATCCCCAAGACAAATCGTCTAGCAGTGAGCCGACAGGTAAATACGTCCCTCCTCATCTCCGTGACGCAGCCGACAGCAAGCGCAGAGCTGAGCTGGAGCGACTAAAACGCAGCCTGAAAGGTCTGATAAACAGGTTGAGTGAACCCAACATGGGCTCCATCAGCGGGCAGGTGGAGGAGATGTACATGAGCAACAGCAGGAAGGACATGAACGACGCGCTGACTGAAGTTCTGATGGCCGCCTGCGTTACGCCAGCGCTGATGCCTGACAGGCTGCTGATGGAGCACATTTTGTTAGTCAGTGTCCTGCATCACACAGTTGGACTGGAGgttGGTGCTCATGTCCTGGAGACGGTGGTGCGCCGCTTCGACGAGACCCAGCGCGACGGATCCATCACGGGTAAAGAGTGCTGTAATCTGGCCTCCATGATGGCGCACATGTACAACTTCCAGGTGGTGCACTCGCTGCTGCTGTTCGACGTGCTGAAGCGGCTGCTGGCGTCGTTCACGCCGCAGGACGTGGAGctcatgctgctgctgctgaggaacGTGGGCTTTTCCCTGAGGAAGGACGACCCTCTGGGCCTGAAGGAGCTGATATCTGAAACCCAGCGCAAAGCCAGCGCAGAGGGATCGCGTTTCAGCGACCAGACCAGAgtgcgGTTCATGTTAGAGACCATGCTGGCGCTGAAGAACAACGACATGCGGAAAATTCCAGGTTACGACCCCGAGCCTGTGGAGAGACTGAGGAAGCTGCAGCGCACGCTGATCCAGAACCGGGCAAGTGGCACTGATGTGAAGCTCAGGGTTTCTTTGGAGAATCTTCTGGAAGCGCAGCGCGTTGGTCGCTGGTGGATCGTCGGCTCGTCCTGGAGTGGAGCGCCCATGATTCAAGACGACAAACCCACAGCGCAGCCTGTTAAAGGGGAGCAGTTCAGTGCCAAAGTGCTGGAGCTGGCACGCAAACAGCGCATGAACACGGACATCAGGAGGAACATCTTCTGCGTCATTATGACCAGCGAGGATTACCTGGACGCCTTTGAGAAGCTCCTCAGACTGGGTCTGAAAGGTCAGCAGGAGCGTGATATCATTCACGTTCTGCTCGACTGCTGCCTGCAGGAGAAATCCTTCAACGGCTTCTACGCAGTTTTAGCAGAGAAGTTTTGTGCACATGACCGACGCTTCCAGATGACTTTCCAGTTCTGTCTGTGGGATAAGTTtaaagatctggcaaccctgtcgaGCAGTTCCTTTACAAACCTCGTCCAGATGGTCACGCACCTCTTAACCAAGAactccctctcactctccaTCCTGAAGgCCATAGAGTTTGGAGAACTCGATAAGCCCAAGGTAAGATTTTTGAGGCAGATCCTCTCTAAACTCTTACAGCAGACTCAGGAGGAGGATCTGGTTCAGATTTTCACCCGGATTTCTGGAATTCCTAAGCTAGGAATGCTACGTGAAGGACTGAAGCTCTTCATCAGGCACTTCCTGCTTCGGAGTGTGCAGACGGAGGGAACGCTGCTCACCGAGAGGGCCGAGGTCGCCATCAAGGCCATGGAGGCTCGCGACGCCAAGCTCAaactgtagcacacacacagtttctatCTGAGACTCGTGacaaaaatttttattaattgaacAGACTTCGTCCAGGAGGTGGCTCTTCAACCCAAATAATGAGGTCGATGTTTTCTAggactcactttttttttttcctttgcagtccattttaacatttttagtgGAAGGAGCACTCGATGTCCACGGCCACTTTAAACAAGGAGCCTCAGCTgtggaaagaagcaaaaaaaaacacctgttgGATTAACAACATCGAATATTCTTTATACTTTCATAATCTGTGAAGAACCTGGACTATAAAAACTTTCATTctcaaatatttcattattaataacaaagaaaaaggtGCGTGAGTGTCATGACAAAATGTCAAGACAGACTCGGAAAATGACTAATTCAGGTGTCAAGATAACCTtttcaataaaacatttaacagaTGCTTTATAAAAA

Function

symbol description
nom1 Predicted to enable RNA binding activity. Acts upstream of or within ribosome biogenesis. Predicted to be active in nucleolus. Is expressed in brain; intestine; liver; and pancreas. Orthologous to human NOM1 (nucleolar protein with MIF4G domain 1).

NR:

description
nucleolar MIF4G domain-containing protein 1

GO: NA

KEGG:

id description
K17583 NOM1; nucleolar MIF4G domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947582.2 True 3132 mRNA 0.50 13 4758649 4769871

Neighbor

gene id symbol gene type direction distance location
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding downstream 29527 4678739 ~ 4729122 (-)
LOC113547274 LOC108268240 coding downstream 86464 4663140 ~ 4672185 (-)
LOC113547271 LOC108268229 coding downstream 98269 4650694 ~ 4660380 (-)
LOC113547273 LOC108268233 coding downstream 118365 4634325 ~ 4640284 (-)
LOC113547217 LOC108268239 coding downstream 125384 4613028 ~ 4633265 (-)
trnar-ucg_1 NA coding upstream 39921 4809792 ~ 4809864 (-)
c8a c8a coding upstream 96610 4866481 ~ 4878229 (-)
LOC113547302 LOC108268221 coding upstream 191120 4960991 ~ 4973092 (-)
LOC113547301 LOC108268219 coding upstream 204391 4974262 ~ 4982521 (-)
LOC113547304 LOC108268219 coding upstream 222718 4992589 ~ 5017807 (-)
G59416 NA non-coding downstream 884 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 79913 4677165 ~ 4678736 (-)
LOC117597175 LOC108268239 non-coding downstream 162118 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 166881 4590344 ~ 4591768 (-)
G59385 NA non-coding downstream 198139 4559733 ~ 4560510 (-)
G59559 NA non-coding upstream 100289 4870160 ~ 4914451 (-)
G59598 NA non-coding upstream 187846 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 352265 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 409874 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 422289 5192160 ~ 5220686 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 110769 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 186822 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 502365 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 548543 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 838518 3894592 ~ 3920131 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 158489 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 312937 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 708671 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 1130378 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 2111511 6881382 ~ 6899227 (-)

Expression


Co-expression Network