LOC117596971 (LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673)


Basic Information

Item Value
gene id LOC117596971
gene name LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11467950 ~ 11582422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303229.1
taaagtgaaagtgaaaggcAGTTAGATCACACTGAGAAGAAAAacttattttcacattaatttCTGAAATTACCTGCAGGATATTCACTGACTCTGGGATATAAATGCAGACCATTCTCACTAACTGAAAAGAGGCAAGTGAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTCCATCACAAACAAAAGACAGAAGAAGGAAGAGCATGGATGAACCACATTCATtcCTAGTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCCGAGGTTCTTTGTGATGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGGATTGTGTTCTGACTTTGTGTAAGTCTCATCTAGAGCCTCATAATCATGTTCCAAGACTTAAGAAACACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGACAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTGTAGAggaggagagcagagagagaaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTCCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACGTGTGGAGACACAGAACAGGATCTCCCTGATACACCACAGAGGTTTAATGCATGTGTTAATGTTCTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCCACAGAGTCCATTAACAGGAAGGGGAAGATTACACTGAAACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACAGTGCTTGTGCTGGTCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTGTTTAAATAAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGctgagaataaaaagaaatattttactcTTTTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA
>XM_034303230.1
taaagtgaaagtgaaaggcAGTTAGATCACACTGAGAAGAAAAacttattttcacattaatttCTGAAATTACCTGCAGGATATTCACTGACTCTGGGATATAAATGCAGACCATTCTCACTAACTGAAAAGAGGCAAGTGAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTCCATCACAAACAAAAGACAGAAGAAGGAAGAGCATGGATGAACCACATTCATTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCCGAGGTTCTTTGTGATGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGGATTGTGTTCTGACTTTGTGTAAGTCTCATCTAGAGCCTCATAATCATGTTCCAAGACTTAAGAAACACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGACAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTGTAGAggaggagagcagagagagaaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTCCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACGTGTGGAGACACAGAACAGGATCTCCCTGATACACCACAGAGGTTTAATGCATGTGTTAATGTTCTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCCACAGAGTCCATTAACAGGAAGGGGAAGATTACACTGAAACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACAGTGCTTGTGCTGGTCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTGTTTAAATAAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGctgagaataaaaagaaatattttactcTTTTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA
>XM_034303231.1
ATATTCACTGACTCCGAGATATAAAGTCAGACCATTCTCACTCCCTGAAAAGAGGCAAGTAAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTCCATCACAAACAAAAGACAGAAGAAGGAAGAGCATGGATGAACCACATTCATTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCCGAGGTTCTTTGTGATGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGGATTGTGTTCTGACTTTGTGTAAGTCTCATCTAGAGCCTCATAATCATGTTCCAAGACTTAAGAAACACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGACAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTGTAGAggaggagagcagagagagaaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTCCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACGTGTGGAGACACAGAACAGGATCTCCCTGATACACCACAGAGGTTTAATGCATGTGTTAATGTTCTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCCACAGAGTCCATTAACAGGAAGGGGAAGATTACACTGAAACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACAGTGCTTGTGCTGGTCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTGTTTAAATAAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGctgagaataaaaagaaatattttactcTTTTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA
>XM_034303232.1
AAAGTAAATGGCTGAATCTTTATCAACAACAAAAGCCAGAAGAAGGAACAGCATGGAAGAACCACATTCATTCCTAGTTTCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTGACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCCGAAATGAAGATTAATACAACACTGAGAGACAACACTGTTCCTATAGAggaggagagcagagagaggaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTCCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACGTGTGGAGACACAGAACAGGATCTCCCTGATACACCACAGAGGTTTAATGCATGTGTTAATGTTCTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCCACAGAGTCCATTAACAGGAAGGGGAAGATTACACTGAAACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACAGTGCTTGTGCTGGTCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTGTTTAAATAAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGctgagaataaaaagaaatattttactcTTTTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA
>XM_034303233.1
CATGGAAGAACCACATTCATTTTCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTGACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCCGAAATGAAGATTAATACAACACTGAGAGACAACACTGTTCCTATAGAggaggagagcagagagaggaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTCCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACGTGTGGAGACACAGAACAGGATCTCCCTGATACACCACAGAGGTTTAATGCATGTGTTAATGTTCTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCCACAGAGTCCATTAACAGGAAGGGGAAGATTACACTGAAACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACAGTGCTTGTGCTGGTCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTGTTTAAATAAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGctgagaataaaaagaaatattttactcTTTTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303229.1 True 2105 mRNA 0.43 8 11570128 11582422
XM_034303230.1 False 2099 mRNA 0.43 8 11570128 11582422
XM_034303231.1 False 2019 mRNA 0.43 8 11467950 11582422
XM_034303232.1 False 1640 mRNA 0.43 7 11549600 11582422
XM_034303233.1 False 1583 mRNA 0.44 7 11549651 11582422

Neighbor

gene id symbol gene type direction distance location
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding upstream 5203 11453930 ~ 11462747 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding upstream 22765 11440088 ~ 11445185 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding upstream 67344 11383434 ~ 11400606 (+)
cideb cideb,LOC108440045 coding upstream 209288 11255938 ~ 11258662 (+)
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding upstream 223373 11240674 ~ 11244577 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding downstream 31346 11613768 ~ 11619677 (+)
zgc:162171 LOC108267158 coding downstream 49554 11631976 ~ 11637570 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding downstream 125037 11707459 ~ 11716739 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding downstream 236344 11818766 ~ 11824148 (+)
si:dkey-171c9.3 LOC108268329 coding downstream 503757 12086179 ~ 12093053 (+)
LOC117596988 NA non-coding upstream 3344 11463083 ~ 11464606 (+)
G62618 NA non-coding upstream 30095 11437529 ~ 11437855 (+)
LOC113540368 NA non-coding upstream 46772 11418007 ~ 11421178 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding upstream 101167 11275439 ~ 11366783 (+)
G62639 NA non-coding downstream 26334 11608756 ~ 11609269 (+)
G62640 NA non-coding downstream 28414 11610836 ~ 11611057 (+)
G62654 NA non-coding downstream 92891 11675313 ~ 11675695 (+)
G62932 NA non-coding downstream 280211 11862633 ~ 11863683 (+)
G62967 NA non-coding downstream 330428 11912850 ~ 11913106 (+)
c4h4orf48 c7h4orf48 other upstream 804539 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 972480 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 976081 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 977300 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 978514 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 8293 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 62479 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 710069 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1624235 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1693040 13275462 ~ 13285834 (+)

Expression


Co-expression Network