LOC113539902 (LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938)


Basic Information

Item Value
gene id LOC113539902
gene name LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11440088 ~ 11445185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303244.1
ACAGGATACTCAGTCACTCTGACAGGACAGTGAACACAAAAAGTCTGACCCTTTAGAAAAAGACAGGCTGAAAGTAAAGattaagcAGGAAAGAGTGGGATGAAGGAAATGGCAGAATCAACATCGTCACAACCAAGAAAAAGCATTGCTCGTGACTCCAGCAGTCTCCTGCCTGAAAAGCAGCTGCTGTGTTGGATCTGTGAGGATGTGTTCACTGATCCAGTTACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCTCATCTGAAGATTAATACAATACTGAAAGAGATGGCAAATTCCTTCAAGAAGAAAAGTGGTCATAACAAACCTGAGGTTCTTTGTAACGTCTGCACTAGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGAATTGTCGTACAAGTTTGTGTGAAACTCATTTAGAGGCTCATGATCATTTCCCAGGctttaaaaagcacaaacaaataaaccctgtggagaacctggaggactACACATGCCAGAAACATCATAAACCTCTGGAGCTGTTCTGTAGAGATGATCAGATATGTGTTTGTCAGTTCTGCAATGAAGGAGATCACAAGAATCACAACACTGTTCCTGTAGAGGtggagagcagagagaggaagACTCGGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAAATCACACACTCAGTAAAGCTCAGCAAGAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggATCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGCCAGCTCTGTCTCAGCTTCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTCATACCACTTATCCCAATCTCATCCTCTCTGCTGATGGAAAACGAGTGACACTTGGAGACAAACGACAGAAACTCCCTGATACACCAGAAAGGTTCAATAAATGTCCTAATGTTCTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGAGTGGACATTAGGAGTCGCAACAGAGTCCATTAACAGGAAAGGGAAGATTACACTGAAACCTCAAAATGGATTCTGGACTGTGGGGCTATGGAATGAGAATGAGTATAAAGCTTGTGCTGAAGTCCCTATCCCCCTTACAATGACAGAGAAGGTGGAGAAGGTGGGGGTGTTTGTGGATTATGGGGAGGGTCTGGTCTCCTTTTATGATGTGAAGGCCAGCTCTTATATCTACTCTTTCACTGCTCAGTCTTTCACTGAAAAACTCTATCCATACTTCAGTCCTGGTTTAAATGAAGGAGGTAAAAATTCAGCACCACTGATCATCTCTCCTGTATTTAATAATTGAATATGTAGAGCCCTTTTcactaaaatgtataaatttctAAGAATGTGAAACAAAATTCAAACTGATACTCGCTAATAATGTGAACTGTTGCTTCTTGGTAGTTCATTTTAATTGTCTTATTCTAAAGTGTTTAAAGTGCTTATTTCTATTTAATACTTGCAGTTAGATGTGTTGAGATTAATCCAAATTGTGTATATTCCCCAAGGGGGAAAGTGTACTGTTTAACCTCTGGCTAAAAGATTGAGTTTTTCTCTGAAGACTGTCAGATGATTGGGTCGCAGATGTTCGGCGGGATGGAGGGCTGGGATTTGGACTACTTCACGTGATTCTTTGTAATCGTGTTTGAGTTCTTTGTGGATGGACATCAGGGACATTCAGATGTGTACTTCTTTTCCCCTTAAGATTATGAACATGGCTGTTCATCTCTTCACCTTACCAGGAGTTTGTGAGTATACATAAATTGTTGAATAGACATGAGCTCCAATGATGCGTGGCAATGAAGGACTTCCCAGCTGGgtgtttgttattgtttttttgttttctattctGTTCAAATTGAGGGGTTAAGTTGCTTGTTGAACTTGATTCAGTGCCCAAAACCTACAAGAggcaaaaagagagaaagaggagattCAAAGTTTAGTAAACAGCACTGATTTGTTCTAATttcacttttgtgtgtgttctcgGTGAGCAGAGATTGTTGACTTTACCTATTTTTGAATTATTGACTATTGTTTGATTGATACATGGATACTCTTGAAATAGTAAATTGAATAAATTGCAAATTTTTGAGTAATTGGTAAATTTTAGAAATACATATTCCCTTTTAAAATGCTGTGCAGTTTATTTTAGTACCTGGGGTTTGTTGTGCATAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303244.1 True 2651 mRNA 0.42 8 11440088 11445185

Neighbor

gene id symbol gene type direction distance location
si:dkey-183c6.8 LOC108267925,LOC108434846 coding upstream 39482 11383434 ~ 11400606 (+)
cideb cideb,LOC108440045 coding upstream 181426 11255938 ~ 11258662 (+)
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding upstream 195511 11240674 ~ 11244577 (+)
ajuba ajuba coding upstream 248094 11183735 ~ 11191994 (+)
mmp14a mmp14,mmp14a,LOC107691938,LOC107753930 coding upstream 268748 11159921 ~ 11171340 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding downstream 8745 11453930 ~ 11462747 (+)
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding downstream 22765 11467950 ~ 11582422 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding downstream 168583 11613768 ~ 11619677 (+)
zgc:162171 LOC108267158 coding downstream 186791 11631976 ~ 11637570 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding downstream 262274 11707459 ~ 11716739 (+)
G62618 NA non-coding upstream 2233 11437529 ~ 11437855 (+)
LOC113540368 NA non-coding upstream 18910 11418007 ~ 11421178 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding upstream 73305 11275439 ~ 11366783 (+)
G62585 LOC108267738,LOC108267739,LOC108267932,LOC108267937,LOC108267938,LOC108267241,LOC108267941 non-coding upstream 79573 11320097 ~ 11360515 (+)
LOC117596981 NA non-coding upstream 114336 11322470 ~ 11325752 (+)
LOC117596988 NA non-coding downstream 17898 11463083 ~ 11464606 (+)
G62639 NA non-coding downstream 163571 11608756 ~ 11609269 (+)
G62640 NA non-coding downstream 165651 11610836 ~ 11611057 (+)
G62654 NA non-coding downstream 230128 11675313 ~ 11675695 (+)
G62932 NA non-coding downstream 417448 11862633 ~ 11863683 (+)
c4h4orf48 c7h4orf48 other upstream 776677 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 944618 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 948219 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 949438 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 950652 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 145530 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 199716 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 847306 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1761472 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1830277 13275462 ~ 13285834 (+)

Expression


Co-expression Network