LOC113538503 (LOC108261535)


Basic Information

Item Value
gene id LOC113538503
gene name LOC108261535
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10167917 ~ 10189928 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303249.1
ATCACTATAAAAACAAGCCATTAAATCTCTCAATTAAATACCACAGCTGTGATTTGAGCTGGGGCGGAATTTAAATGTGTGGCGGGCTGTCATCTGTCTACacagtgtgtttaagtgtttgaAGGAACTATTCCACACAAACTGCACTGTAATCATTTTTGATCCACCCATAATCCTTAACTCAGTTCACTAGAAGTGAACAAGGAAGTGACTAAAGTGAAAGCAGTTAGCTCCCAGGGAGCAGAATCCCttctttttataataaatactgaACTTATATGTAACTGCAGGATATACACTGACTGTGAAAGGAATATAAATGCAGACCATTCTCACTTCCTGAAAAGAGGCAAGTAAAATAAAGgaattatgtttttgtgtgtgactCTCCTGATTCTCTTCAGCTTTATGGAATCTCAATCAGAGCATTTACAGGTGGTTGGTCCAGAAGCTCCTCTTGTTGCTGTAGCTGGTGAAGATCTGGTTCTGCCCTGTTTTATCAAACCCAACACCAGCGCTGTGGACATGACAGTGGAGTGGTTCAGACTAGATGTAAAGGACTCATTAGTGCATCTCTATAAGGATCATGAAGACAGAAATGAATATCAGGCTCAGTCCTACAGAAGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGGAGGAGAATATAAGTGTCTTGTTGAGGACAAATCCTGGTCTGATGACATCATTGTGAACGTCATTGTCGAAGCTCAGGGAAGCCACCCAGTAATCATGATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGTTGGAACCCTGAACCTGATGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTGAAgctacacagatacacagagacactgagggCTTCAGTGTGAAACGCCGCATCACTGTTTATGATTATAGCAACTCCAACACGTTTTACTGCAGATTTCAACAAATTCATCACATGATGGAGGCAGAAGTTATCATTAATAGTAAAGTCTTCGATGCTTGGAAGTGGATTGTTGGCATTTCAGTTTCAGCATGTCTTATTGCTGTTGGATTGATAGCTGCAATAACTGCAATTATTTGTCACAAGAAAGagCTGCAGAGACAGAGCATGGAATATGagaggcagatacagagGCTGGGAGCCGAGatgcagaaagagaaggagtaCACAGaaCTGCAGAGACAGAGCGTGGAATATGAGTTAGTAAAGAAGAAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCAAATCCATATCTCATCCTGTCTGCTGATGGAAAACAAGTGACATGTGGAGACGAGTGGAAGGATCTCCCTGATACACCACAGAGgtttactttttattatagTGTTGTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTAAGTGGACATTAGGAGTCGTGAGAGAGAACATTGACAGGAAGAGGTGGATTACACCGAAACCTCAGACTGGATTCTGGACTGTGAGACTGTGGGGTGAGAATCAGTATAGTGCTAATGCTGATCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAATCCTTGGTTAAATGATGGAGGTAAAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGgtgagaataaaaagaaatattttacttttttggtgAATTTTAGAAATACATATTCCCTTTTAAAGTGCTGTACAGTTTATTTGAATACctggggtttgttttttttattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA

Function

NR:

description
PREDICTED: butyrophilin subfamily 1 member A1-like isoform X2

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303249.1 True 2076 mRNA 0.41 11 10167917 10189928

Neighbor

gene id symbol gene type direction distance location
LOC117597105 LOC108267929 coding downstream 24488 10111162 ~ 10143429 (-)
LOC113540311 LOC108267981 coding downstream 61388 10095779 ~ 10106529 (-)
LOC113540363 NA coding downstream 72801 10093747 ~ 10095116 (-)
trmt10b trmt10b coding downstream 114703 10046572 ~ 10053214 (-)
intu intu coding downstream 144140 9997315 ~ 10023777 (-)
LOC113547269 NA coding upstream 41746 10231674 ~ 10236612 (-)
LOC117596978 LOC108267983,LOC108267929 coding upstream 118723 10308651 ~ 10320200 (-)
LOC113540334 LOC108267980 coding upstream 143541 10333469 ~ 10344131 (-)
f13a1b LOC108267979,LOC108411459 coding upstream 156352 10346280 ~ 10359403 (-)
tex261 tex261,LOC107755640 coding upstream 208625 10398553 ~ 10404916 (-)
LOC113540700 NA non-coding downstream 126138 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 127223 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 128330 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 129151 10038554 ~ 10038766 (-)
LOC117597222 NA non-coding downstream 130560 10037145 ~ 10037357 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding upstream 12303 10202231 ~ 10211232 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 174084 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 178393 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 284842 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 307593 10497521 ~ 10499087 (-)
LOC113540372 NA other downstream 87680 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 94688 10070406 ~ 10073229 (-)
G61900 NA other downstream 126151 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 362599 9776278 ~ 9805318 (-)
G61537 NA other downstream 829172 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 296740 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 300420 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 301662 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 305237 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 348317 10538245 ~ 10562006 (-)

Expression


Co-expression Network