LOC113538341


Basic Information

Item Value
gene id LOC113538341
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10236752 ~ 10266758 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303250.1
aaaacaggttgcACAGGTTACATAAACGAAAGTACACCAGACTTTGGGACAAAGGGCCTTTATTTTTAGTGTCTTCTTACTTACTTTTGTGTTAAATTGTGCACCTAGAGCAATTCGTAAAATGTTATTTAGCTTGTGAAAAAGACTGAAGAAATAATGATAAACTCTCTTTCAGGGATGTTTTTGTGTGCGACTCTCCTGATTCTCTACAGCTTTATGGACTCTCAATCAGAGGCTCTAAATGTGTTTGGTCCAGAAGTTCCTCTTGTTGCTGTAGCTGGTGAAGATCTGGTTCTGCCTTGTTTTCTTAAACCCAGTACCAGCGCTGTGGACATGACAGTGGAATGGATCAAACTAGATGTAGAGCACTCATTAGTGCATCTCTATAATGATCATGAAGACAGAAATGCAAAGCAGGCTCAGCCCTACAGAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTGCGAGTCTCTGATGAAGGAAGATATAAGTGTCTCGTTGAGGACGAATCCTGGTATGATGACATCATTGTGAACATCATTGTCGAGGCTCAGGGAAGCCACCCGGTGATCACAATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAAACCTGAACCTGAGGTTCTGTGGCTGGACAGAGAAGGAGCCGCTCTGCCTGCTGAAgctacacagatacacagagacactgagggCTTCAGTGTGAAACGCCGCATCACTGTTTATGATTATAGCAACTCCAACAAGTTTTACTGCAGATTTCGACAAATTCGTCACATGATGGAGGCAGAAGTTATCATTAATAGTAAAGTCTTTGATGCTTGGAAGTTTGCTGTTGGCATTTCAGTTCCAGCATGTCTTACTGCTTTAGGACTGATAGTAACTGCAGCTATTTTTTACAAGAAAGtgcTGTCGAGACAGAGTGTGGAACGCGAGTTTGCAGCGATGGAGAGGGTTGTAGagCCGCAGAGACGGAGGATAAAACACGTGTTAGCAGAGATGAAGAAGTTTGCAGtggATGTGACTCTGGATCCTGATACAGCAAATCCATATCTCATCCTGTCTGCTGATGGAAAACAAGTGACATGTGGAGACGAGTGGAAGGATCTCCCTGATACACCACAGAGGTTTACTTCTTATTCCTGTGTTGTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTAAGTGGACATTAGGAGTCGTGAGAGAGAACATTGACAGGAAGAGGTGGATTACACCGAAACCTCAGACTGGATTCTGGACTGTGGCTCTGTGGGGTGAGAATCAGTACTGGGCTCATGCTGATCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTAAGAAGAAACTCTATCCATTCTTCTATCCAGGTTTAAATGATGGAGGTATAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGgtgagaataaaaagaaatatttgacTTTTCTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGCTGTACAGTTTATTTGAATACCTggggtttattttttaattttaatcctacagtctgtttttacacattatgaTTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTCTGTGTAGATACAACCGAACAAAACTGTTTCTCCTTCAGActccatcaaacacaaatacaatcaaattcagcttttatttagaaataaaaatgtcagggttattctgttctttaaaaaaaagaaaaagaaatgaaatgaatgaataagtgaatCTTCTACCTGCGCTGTTTTCCATCAGTAAATGTTCATATCGTAACTGAGAACAAATTACTTAAACGTAGGATGACAGAGGGagcctcattaatattcatgacgAAGCGCcacctgattggtcagtgacACGTTTCGGCTCTGACGTTTCATGTTGCTGCACG
>XM_034303251.1
CAGTCCTTAAGAAGATGACGGCACTGGGTCTGCAGCCTTTCCTCATCTATCCGGCGGCAATTAAACTACGGCACTAAGGGATGTTTTTGTGTGCGACTCTCCTGATTCTCTACAGCTTTATGGACTCTCAATCAGAGGCTCTAAATGTGTTTGGTCCAGAAGTTCCTCTTGTTGCTGTAGCTGGTGAAGATCTGGTTCTGCCTTGTTTTCTTAAACCCAGTACCAGCGCTGTGGACATGACAGTGGAATGGATCAAACTAGATGTAGAGCACTCATTAGTGCATCTCTATAATGATCATGAAGACAGAAATGCAAAGCAGGCTCAGCCCTACAGAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTGCGAGTCTCTGATGAAGGAAGATATAAGTGTCTCGTTGAGGACGAATCCTGGTATGATGACATCATTGTGAACATCATTGTCGAGGCTCAGGGAAGCCACCCGGTGATCACAATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAAACCTGAACCTGAGGTTCTGTGGCTGGACAGAGAAGGAGCCGCTCTGCCTGCTGAAgctacacagatacacagagacactgagggCTTCAGTGTGAAACGCCGCATCACTGTTTATGATTATAGCAACTCCAACAAGTTTTACTGCAGATTTCGACAAATTCGTCACATGATGGAGGCAGAAGTTATCATTAATAGTAAAGTCTTTGATGCTTGGAAGTTTGCTGTTGGCATTTCAGTTCCAGCATGTCTTACTGCTTTAGGACTGATAGTAACTGCAGCTATTTTTTACAAGAAAGtgcTGTCGAGACAGAGTGTGGAACGCGAGTTTGCAGCGATGGAGAGGGTTGTAGagCCGCAGAGACGGAGGATAAAACACGTGTTAGCAGAGATGAAGAAGTTTGCAGtggATGTGACTCTGGATCCTGATACAGCAAATCCATATCTCATCCTGTCTGCTGATGGAAAACAAGTGACATGTGGAGACGAGTGGAAGGATCTCCCTGATACACCACAGAGGTTTACTTCTTATTCCTGTGTTGTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTAAGTGGACATTAGGAGTCGTGAGAGAGAACATTGACAGGAAGAGGTGGATTACACCGAAACCTCAGACTGGATTCTGGACTGTGGCTCTGTGGGGTGAGAATCAGTACTGGGCTCATGCTGATCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTAAGAAGAAACTCTATCCATTCTTCTATCCAGGTTTAAATGATGGAGGTATAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGgtgagaataaaaagaaatatttgacTTTTCTGGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGCTGTACAGTTTATTTGAATACCTggggtttattttttaattttaatcctacagtctgtttttacacattatgaTTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTCTGTGTAGATACAACCGAACAAAACTGTTTCTCCTTCAGActccatcaaacacaaatacaatcaaattcagcttttatttagaaataaaaatgtcagggttattctgttctttaaaaaaaagaaaaagaaatgaaatgaatgaataagtgaatCTTCTACCTGCGCTGTTTTCCATCAGTAAATGTTCATATCGTAACTGAGAACAAATTACTTAAACGTAGGATGACAGAGGGagcctcattaatattcatgacgAAGCGCcacctgattggtcagtgacACGTTTCGGCTCTGACGTTTCATGTTGCTGCACG

Function

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303250.1 True 2230 mRNA 0.41 9 10248537 10266758
XM_034303251.1 False 2133 mRNA 0.42 10 10236752 10266758

Neighbor

gene id symbol gene type direction distance location
LOC117597106 LOC108267738,LOC108267931,LOC108267929,LOC108267937 coding upstream 12149 10223782 ~ 10224603 (+)
ino80b ino80b coding upstream 239704 9992956 ~ 9997048 (+)
clcn3 clcn3,LOC107692822,LOC107696737 coding upstream 269920 9927321 ~ 9966832 (+)
nit1 nit1 coding upstream 310898 9919860 ~ 9925854 (+)
trnas-gcu NA coding upstream 324274 9912397 ~ 9912478 (+)
LOC117597107 LOC108267981 coding downstream 4085 10270843 ~ 10280812 (+)
LOC113540310 LOC108267978 coding downstream 96232 10362990 ~ 10370654 (+)
si:ch211-1o7.2 ankrd53 coding downstream 125617 10392375 ~ 10396736 (+)
trnak-cuu_4 NA coding downstream 207860 10474618 ~ 10474690 (+)
trnak-cuu_5 NA coding downstream 209099 10475857 ~ 10475929 (+)
LOC113540370 NA non-coding upstream 140684 10024585 ~ 10096068 (+)
G61735 NA non-coding upstream 189201 10046592 ~ 10047551 (+)
G61689 NA non-coding upstream 267852 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding upstream 317969 9914235 ~ 9918783 (+)
G61638 NA non-coding upstream 644009 9578364 ~ 9592743 (+)
LOC117596987 NA non-coding downstream 23116 10289874 ~ 10290684 (+)
G61842 NA non-coding downstream 91056 10357814 ~ 10358964 (+)
G62131 NA non-coding downstream 230372 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 232517 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 264213 10530971 ~ 10531044 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 354039 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 404472 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 462703 9758460 ~ 9774049 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 866267 8724545 ~ 9370485 (+)
trnak-cuu_13 NA other downstream 208010 10474768 ~ 10486042 (+)
trnak-cuu_14 NA other downstream 220144 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 221382 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 222607 10489365 ~ 10489436 (+)
trnak-cuu_17 NA other downstream 223820 10490578 ~ 10490650 (+)

Expression


Co-expression Network