msmp (msmp)


Basic Information

Item Value
gene id msmp
gene name msmp
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10569552 ~ 10574841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303279.1
TTTAATGaacgtcatcatcatcatcatcatcatcaaacatcattatcatcatcattgtaATTATTATGTGCTTTCTAGCCTTCCATTGAATGACCAAGCCAAGCCATTAAAACCAGCAAAGAACCACAGTGTTCTTTCATTTAAGTCATGTTTAAGCCTTTCATTTAAGCCTGGTTTCAGCCTCACTGGTGATCAAAACACAACTGTGGAACTTCTCTTCTCTGTGGCTTGGCCAGCAGTTATGTACATAAAATGGTGAATGAGTCAGTCTTCATACCAGCCCAACACCTCAGTCCATTACATGCTCCACTCAGTGTTAAAGAGCTGTTTAAGAGGACAAGCGCCATTGCTCTCCCACTGTGTgctccacacactcacagcagagGCTATGTCCTTTCTCCTTTACGCAAACCCACATTCCTGGGCTTTTATACTGAGGGGAAGTGGGTGGTCAAGCTTTCCAGCCACTGGACAAGACACAAAAACTACAGGGTCAAGCCAAGGTGTGTGTCATGCCCAGTGGAGCAGAGAATGGCAAATCGCTGGAGAAACAGATCGAATGGTGCCAAGCCACAGCCTTTTTCCTCTCcaacccccccaaaaaacacGCCAATGGTTCCCCCTCCCACCTCTGCTGCACCTCGAGCTCACATAAGTGTGGGGGGGTATAAATGGAGTTACAGAAACAGAGAGTGATTCAGACAACaagtgacagaaagagaagagatGGCAGGACAGTGGATGATGATCTTGATTGGTGTTTCACTGGGGATGACCTGCTTGGCAGCTCCAACCGAATGCCACTTCAACTCTCAAGctctgtgtgagTATGAGGGAAGGCACTACTCATTGGGTCAGAGCTGGATGGAACAGGGGTGCATACAGTGCACCTGTCTGCACCCTTTTGGGGTGGGCTGTTGTGAAACTGTGGAGCAGCCAGTGGACTTCCCACCTTGGTGCCAGGTGCGAGTTGAATCTGTAACCTGCAAGGTGAGCTTGGTGCTGACCTCTGACCCACGTCTGCCCTGCCTTCCGGGAGAGGGGAACAGTGTGGACCCCAGTCATGGAGAAATGAACATGAAACTAGCAGGTTAACAAGACAACAAAGCAGTTGATCCATCTGCCAAACCTGCATCATGCCTGTCTGCCTAAGCTGTCATTGTGCTTCATCTGTACGATCTGTAATAATGATACAAGTAACTAATATTTGCTTTTTATCACCCTGAAAGTTAGACAAAGTGGTTGGTCATGTGCTGCTCTTGTCCAGGGGTCATTTCTGTCCCCTGCTTTAATAAACCGTACTGGTTTTATATCTTGCCTGACTATGCAGTGATGAAAGAACCCTCCAGAGCACAGATTTGGTAATAATTGCAAAAGACTTCTAGTCTAGGTACAGGTGATTCACCTATAGTATTCACTATGAAGTTGAAACACAAATACTAATCCTCAATCAGCACTTATAGCCTGGAAAGGACACATGCTGTTTTGGAGTGGTACTTCCTCATCCTTCATTACATTGATTTAATTCATACATCTACTCAAATAGCATGGTCATGATATGTTAATATTACCTAATGCACTATTGTAAATACCCAGCTTTGCGCCTTCAATGatatacatattacagttttatttcatgtgTACCACTTCATA
>XM_034303280.1
cttcatcctggtcaggatccgtcatgtaatGTCATGCCCAGTGGAGCAGAGAATGGCAAATCGCTGGAGAAACAGATCGAATGGTGCCAAGCCACAGCCTTTTTCCTCTCcaacccccccaaaaaacacGCCAATGGTTCCCCCTCCCACCTCTGCTGCACCTCGAGCTCACATAAGTGTGGGGGGGTATAAATGGAGTTACAGAAACAGAGAGTGATTCAGACAACaagtgacagaaagagaagagatGGCAGGACAGTGGATGATGATCTTGATTGGTGTTTCACTGGGGATGACCTGCTTGGCAGCTCCAACCGAATGCCACTTCAACTCTCAAGctctgtgtgagTATGAGGGAAGGCACTACTCATTGGGTCAGAGCTGGATGGAACAGGGGTGCATACAGTGCACCTGTCTGCACCCTTTTGGGGTGGGCTGTTGTGAAACTGTGGAGCAGCCAGTGGACTTCCCACCTTGGTGCCAGGTGCGAGTTGAATCTGTAACCTGCAAGGTGAGCTTGGTGCTGACCTCTGACCCACGTCTGCCCTGCCTTCCGGGAGAGGGGAACAGTGTGGACCCCAGTCATGGAGAAATGAACATGAAACTAGCAGGTTAACAAGACAACAAAGCAGTTGATCCATCTGCCAAACCTGCATCATGCCTGTCTGCCTAAGCTGTCATTGTGCTTCATCTGTACGATCTGTAATAATGATACAAGTAACTAATATTTGCTTTTTATCACCCTGAAAGTTAGACAAAGTGGTTGGTCATGTGCTGCTCTTGTCCAGGGGTCATTTCTGTCCCCTGCTTTAATAAACCGTACTGGTTTTATATCTTGCCTGACTATGCAGTGATGAAAGAACCCTCCAGAGCACAGATTTGGTAATAATTGCAAAAGACTTCTAGTCTAGGTACAGGTGATTCACCTATAGTATTCACTATGAAGTTGAAACACAAATACTAATCCTCAATCAGCACTTATAGCCTGGAAAGGACACATGCTGTTTTGGAGTGGTACTTCCTCATCCTTCATTACATTGATTTAATTCATACATCTACTCAAATAGCATGGTCATGATATGTTAATATTACCTAATGCACTATTGTAAATACCCAGCTTTGCGCCTTCAATGatatacatattacagttttatttcatgtgTACCACTTCATA

Function

symbol description
msmp Enables CCR2 chemokine receptor binding activity. Involved in lymphocyte chemotaxis and monocyte chemotaxis. Located in cytoplasm and extracellular space.

NR:

description
prostate-associated microseminoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303279.1 True 1653 mRNA 0.45 4 10569552 10573792
XM_034303280.1 False 1174 mRNA 0.46 4 10569552 10574841

Neighbor

gene id symbol gene type direction distance location
trnan-guu_8 NA coding downstream 84040 10485439 ~ 10485512 (-)
trnan-guu_7 NA coding downstream 85269 10484209 ~ 10484283 (-)
trnan-guu_6 NA coding downstream 86498 10482981 ~ 10483054 (-)
trnan-guu_5 NA coding downstream 87730 10481749 ~ 10481822 (-)
trnan-guu_4 NA coding downstream 88961 10480517 ~ 10480591 (-)
si:dkeyp-75h12.7 NA coding upstream 20852 10595693 ~ 10601685 (-)
tesk1 tesk1 coding upstream 26996 10601837 ~ 10631020 (-)
nelfa nelfa,LOC107562310,LOC107741467,LOC107753914,LOC107691925,LOC107588166 coding upstream 71810 10646651 ~ 10658141 (-)
haus3 haus3 coding upstream 172931 10747772 ~ 10754568 (-)
LOC113540343 NA coding upstream 448029 11022870 ~ 11023641 (-)
G62167 NA non-coding downstream 35130 10534073 ~ 10534422 (-)
LOC117596989 NA non-coding downstream 70465 10497521 ~ 10499087 (-)
G62125 NA non-coding downstream 85624 10474770 ~ 10483928 (-)
G62109 LOC108267978 non-coding downstream 198989 10368321 ~ 10370563 (-)
G62108 LOC108267978,LOC108411458 non-coding downstream 204660 10364012 ~ 10364892 (-)
G62469 LOC108267929 non-coding upstream 351999 10926840 ~ 10953744 (-)
G62504 LOC108267929,LOC108261535 non-coding upstream 467504 11042345 ~ 11074703 (-)
LOC117596980 NA non-coding upstream 505690 11080531 ~ 11083012 (-)
G62743 NA non-coding upstream 737573 11312414 ~ 11345959 (-)
G62754 NA non-coding upstream 746529 11321370 ~ 11361429 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 7546 10538245 ~ 10562006 (-)
trnan-guu_12 NA other downstream 74314 10495165 ~ 10495238 (-)
trnan-guu_11 NA other downstream 77889 10491590 ~ 10491663 (-)
trnan-guu_10 NA other downstream 79131 10490348 ~ 10490421 (-)
trnan-guu_9 NA other downstream 82811 10486668 ~ 10486741 (-)
poln poln,LOC107563414 other upstream 118416 10693257 ~ 10747646 (-)
svep1 svep1 other upstream 200411 10775252 ~ 10863498 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other upstream 332184 10907025 ~ 10910211 (-)
mrpl52 mrpl52 other upstream 602844 11177685 ~ 11182369 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other upstream 691543 11266384 ~ 11360044 (-)

Expression


Co-expression Network