acin1b (acin1,LOC108267949)


Basic Information

Item Value
gene id acin1b
gene name acin1,LOC108267949
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11192532 ~ 11217230 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303283.1
CCAGCGTCGCGGCGACAGCCCGAAGTTTGAGCGACCGAGCCAAAGGGGGAAGCAAAATGGCGGAACTCGAAGATGTTACGCTAGATGGAAAACCGCTTCATTCGCTTCGTGTGGCGGATTTAAAAGCTGCCTTGGAGCAACGAGGGCTGGCCAAAAGTGGGCAGAAAAATGCGCTCATCAAACGACTAAAAGGGGCACTCATGTTGGAGAGCCTGCAGCGAACCTCCACCTCTCATCCCGGCCTGCAGCCCAACTCGCAGATAGGGGAGGAGATGAGCCAGAacagttttattaaacagtACCTGGCCAAACAGCAAGAGCTCCTGCGTcagagaatggagagagaggCACGGGAGGCAGCTGAGGCAGATGACACAGACAGCCCTGCAGGCCCTGAGGAGGACGATCACACAGCTGCCAACGACAGCACCTCCTACCTGCCAGACAAGCATCACGTTGTAGCATCTCGGCCCTCTGTGCCAGAGGATGGAGGAGGTGATCAGCTGGGTCCACAGGATCCAGTGGCTCTGGGAGGCCACAGGCTGGACGCAGGCAATGCTTCAGTATCACATGATTCCACTGATGTCCCCACAGCCAAGATCTGGCGCCCCTCATTCTCCCAGGAGGAGGTTGCCACTCCCTCCCCTCCCCGTGCAGTTGCCTCTCTTTCTGTGCGTGTGGTTGGTCAGCCAGAGCGACAGGGCGTACCCCTAATTGTACCTCGCCCACAACAAAGAGAAGGAACTGCCCCTGTAGAAGCAGGCCCTGCCCATCCGATGCCACAGCTCAGCCAGTCTGCTCGCACTCAAGAGGAGAGCGATGaagacgatgatgatgacgacgatgacAGCGATGAGAATGATGACTGGGGTCCTTCATCTCGTGGAAGAAAGAACATCCACACACCACCAGCGCAGCGCTCGCGACGCAAGCTTCAGCCTCCTCAACACATTCCACCCCATCATTCTCCATTGCAGCTCCGACAGCccactcctcctccctctccaccCCCAGAGCTCTCCTTCCCCCTGCCTGACACCCCCAAACAAAGTCCCCCAGAGCAGGACGAGCCTGAACCCCCAGAAGGGGCCGCTGTGTCCTCTCCAGTTTCCCTGCAGAGACAAGAATCAAGCTCCAGCTCCAGATCCAGCAGCCCTGAGCCTCCGTCCCAGCGCAGGCCTGGGCCACTCAGTCTGCTGGTACGCAAGATGGAGTCCGAGGGGGCTTTTGATGGTGGGCAGAAGaaagatgaggaggaagagggagagaccGCTGCGGCAATAGTAGAACAGGTAGAGGCTGGACCTGGGGTGCTTGTGTTTTCTAGAGGAGTGAATGATGATGTTCACACTAGTTGTGATTCTGAGGTGGTTCCTGATGAAGATTCACCCCAAGAGCAGCTGCCTGAGGAGCCTGAGTCTCTACCCACTATGCCCTCTATCACTGAAAGCAGCCCTCAGGGGTCAGTGGAGATGAAAGAAGCCGCGGAGGAACAAGAAAAAAGTTCTCAGCTGGACGAAGAAGAGAAGCAAGATGACCAGGAGGGCTGTAGTGAGGAGAAAGAACAGGAGAAAGAACAGGAGAAGGAGGCTGAGGAGAGCTTTAATGTATTATCATGGAAACGTGAGCGAGAGACATCTCCGTCTCAGGATTCCGCTGACTTTCATCATACGTCGCCTCCCCCTTCCCTGCCCGCTCCTGCAAAACGAGCACGCATCTTCTCTGAAGTTCCCCCACCCGAATGCCTCATGTCTCCTTCCAAACCGGAGCAGGTGTCAGTCCTTGTGTCAGGACCTCAGCATGCAGATGCAGATGATGAAATGGAGACAGAAGCTTCTGCTGCACCTTCTCAGTCCTCACCTGAAAAGGAGCATGACGAGGAAATGAAGGAGGTGGAAACAGAGAAGCAGGAATCTGCAGAGGCAGATGAAGCAACAGAAGACATTAACATTAAGCCTCCTTCCACTTCCTCCATCTCCACCACCAGAACAAGTGGAcgtggagagagaaagagagggatctgcagaaagggaaagagagggaTCTGCAGAAAGGGGAAAGAGAGGGATCtgcagaaggagaaagagagggatctgcagaaggagaaagagagggatcagcagaaggagaaagagagggatctgcagaaggagaaagagagggatctgcagaaggagaaagagagggatctgcagaaggagaaagagagatacccgcagagggaaagggagagatCCGctgagagggaaagggagagatccgcagagagggaaagggagagatCCGctgagagggaaagggagagatCCGctgagagggaaagggagagatCCGctgagagggaaagggagagatCCGctgagagggaaagggagagatCCACAGAGAGGGAAAAATCACCTGAACAGCACTCATCCCCCTCCAGCCAGTCTTCATCctctgactctgattcagaATCCTCTTCCTCCAGTTCCTCAGGCTCCTCCCCACAGGACAAACCCAGACCACCCATTCAGAATAAGgttgaagagaaaaaagcaaGCAGCCCAGATGAGGCAACAGAGGAGAAGGATGAACCTTTAAGggaTGTAAAGCAGGCCACGGTTGCTGAGCCCACAGGTCCCGTCTCTATGGAGCTCCAGGAACAACCCGAGTCTGAGAGTGCACTGGCTCATCCTGCCTCACAGGAGGCGCCTGAGACCAGCGAGTCCCGTCCTGATGAGAGCACCACTCCAAAAGCGTTTGCTGCACGCAAGATTTCACTTACTaCCACTAAACCAGAAGGAGCAGGAGTGGAGGCGGAGTCTGGGGGCGGAGCTGGTAGGAAGAGGAGGTGGGGCTCCAGTACAGCAGTCACTGCCAAAAAGCCATCAATCAGCATCACCACTGAATCACTGAAGtctttAATCCCAGACCTTAAGCCGCTGCAAGAGGCTGTGGTGGACCTGCACCCAGATGAGGGTCGTTTCTCCGGGGATGAGGACTCGGGTCAGCAGCCTGAACACGACGAGGACCAGGGGCTTCAGATCAGACGTACTGTAACACAGGTGGTTCCATCAGAAAGTCAAGAGAATGGgcagaaagaaaaggaggaggatgaagatgaggatgaagagcagacagaaggagagaaagagaaacccCCCAAGAAACAGAGGAGGGAGAGCTCATCAGaggttgccatggaaacacaGGAGGGTGACACTAAGAAAGtgacccCTAACGACTCAGTGGTGCGGCGCTCCATCAGTCAGCAGAAAGTGGCTGTGTCCATCACCATCGATGACCCGGTGCGCACGGGCCGCCAGCTCTCACCTCCCCGCGGCAAAACATCCAACGTCATCCATGTCTGTAACCTGgttcgTCCCTTTACTTTAGGCCAGCTGAAGGAGCTGTTGAATCGGACCGGTACAGTGGTGGAGGACGGCTTCTGGATCGATAAGATCAAATCCCACTGCTATGTCACTTACTCCAGTACAGAGGAGGCTGTCGCGACACGTGAAGCTCTCCACGGTGTGAAATGGCCCTCTAGCAACCCCAAAGTGCTCCGGGTGGATTTCTGTGAACAGAAGGAGCTGGACTTCCATAAAGGGCTGCTGACAGGTGAAGACCCACGAGCCGTTGCAGCCCCGAACCGCCCTCCAGCCCCTCCCCCACTCATGCCCCCGACCCGGGAGAAAGAGCGGGAGCGGGAGAAAGATGGCGCTCCGGCAAATGTGAGGGACCAGTGGGctgagagggagcgagagatgGAGCGCAGAGAGAGGACGCGCTCGGAGAGAGAGTGGGACAGGGACAAAGTGCGAGACTTCACCAGGGACGAACGGGAAGCAGCCAGGAGATCACGATCACGTGAGCGGGACAGGAGACGCAAGGAGCGAGGAAAGAGTAAAGAGAGGAAGTCAGAGAAAAAAGATAAACCAGAGGAGCCACCTGCCAAACTTCTGGATGACCTTTTCCGCAAAACCAAAGCAGCTCCATGTATATACTGGCTGCCACTTACTGAAGAACAGGCGACTCAGAAGAGCCTGGAACGAGCGGAGAGGATGAAGGAGcgggagaagaggaggaaggagctgcaggaggaggaggacaagAAGcgtgaggaggagaggaaggagagagcaCGAGGccgagagagagatggagggaacaCGGCGAGCAGTGGAGCAGGCTCAAGCCGTCCAGCTGAAGGAGAGAAGgacaaagagagggagagggaaagagagagggagcggGAACGGGgtagagagaaggagggagagaaaaggagagacagCAACAGAGGCCGAGGCAGCGACTCCAAGCCAGCGGGGGGCAGCAGACGCTCACGAAGCCACAGCAACCCCTCCAGGGACAGACGACgctgagagtgtgagagagagagagagagagagagagagagagagagagagagagcgcaaatacaagcgtgtgtgtgtggtactagGAGGAAGATGGATGCCCTTTCTTGCCGACTGAGGCCAAACTATGAAGCAAAAGTTCCAATCCTGAAAATCTTCATTGTTTCATATGCATACACTTTGGTAGCGTTTCACACATTCGGTCACATCTGCTGTACATCCTTCTTTCAGGACtttcaggacattttttttttattattattattagttccATTTTTGTGTTGTAGAaatcttttccctttttttgtgattttgcagtTGATTACTGTTTCTCTGGTCTTAAACAGATTTGTATCAAGGGCTTGCGCCGATTCATTTCCTCGTAATCATACATTCTCACACATGGACAAGGCTAGTCCGTCAGCAGggtgattatttttaatgcatcatTTTCTCACATCTTTTGTTCTTTTAAGcccttgattattttttatttataaattctaATTGGAGTCAGCTGTGGCAGTCAACTTGCCAAGTAGTTCcctataaaataattattttattcattctgagACTTTTAATTAACTTTGGTTGACCAAAATATCCCCCTAAGCATCGTTTTGGCCATCGAGTCGGGCTAATTGTGGTGTGTTTGGGCAGCGGCCTCACCCTTCCAGACCCTTCTGCACTGAATGGCTGACTACTGCGTATCTGTCCGGTGTTAACTCTAGAAAGGTGCTGTTATGAAGGATAACAGGTGTTTAACACGTCTCGTCTCTCCCCGTCCTACTGCTGCCTCCATCCTTGCGTCTCCCTGTCCCTCCCTGTGTTCTCCTGTTGGGAGTCTGTAGTCCTCTCAATTCTTTAGTGTTGTACTCCAAGATTCAGATAAGGGAGAAAACTAACCGTTATAGACGAGAGGAATGATACAtgttttaatgatgttttaacttctttttttttttttttttt

Function

symbol description
acin1 Enables RNA binding activity. Involved in several processes, including apoptotic chromosome condensation; negative regulation of mRNA splicing, via spliceosome; and positive regulation of monocyte differentiation. Located in cytosol; nuclear speck; and plasma membrane. Part of ASAP complex. Colocalizes with exon-exon junction complex.

NR:

description
PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like isoform X1

GO: NA

KEGG:

id description
K12875 ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303283.1 True 5339 mRNA 0.53 19 11192532 11217230

Neighbor

gene id symbol gene type direction distance location
lrp10 lrp10 coding downstream 35420 11146952 ~ 11157112 (-)
LOC113539898 LOC108267947 coding downstream 45658 11137415 ~ 11146874 (-)
LOC113540343 NA coding downstream 168891 11022870 ~ 11023641 (-)
haus3 haus3 coding downstream 437964 10747772 ~ 10754568 (-)
nelfa nelfa,LOC107562310,LOC107741467,LOC107753914,LOC107691925,LOC107588166 coding downstream 534391 10646651 ~ 10658141 (-)
efs LOC108267924 coding upstream 556 11217786 ~ 11231197 (-)
LOC113540349 LOC108267946 coding upstream 15818 11233048 ~ 11239469 (-)
tinf2 LOC108267930 coding upstream 27541 11244771 ~ 11263066 (-)
homezb LOC108267927 coding upstream 41458 11258688 ~ 11264090 (-)
LOC117597109 LOC108267929,LOC108261535 coding upstream 102805 11320035 ~ 11341183 (-)
LOC117596980 NA non-coding downstream 109520 11080531 ~ 11083012 (-)
G62504 LOC108267929,LOC108261535 non-coding downstream 117829 11042345 ~ 11074703 (-)
G62469 LOC108267929 non-coding downstream 238788 10926840 ~ 10953744 (-)
G62183 NA non-coding downstream 620172 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 658110 10534073 ~ 10534422 (-)
G62743 NA non-coding upstream 95184 11312414 ~ 11345959 (-)
G62754 NA non-coding upstream 104140 11321370 ~ 11361429 (-)
LOC117596984 NA non-coding upstream 133467 11350697 ~ 11358554 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding upstream 148025 11365255 ~ 11366181 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 223887 11441117 ~ 11471047 (-)
mrpl52 mrpl52 other downstream 10163 11177685 ~ 11182369 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 282321 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 329034 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 444886 10693257 ~ 10747646 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 630526 10538245 ~ 10562006 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other upstream 49154 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other upstream 69219 11286449 ~ 11313616 (-)
si:dkey-183c6.7 LOC108267942 other upstream 184797 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 307596 11524826 ~ 11535243 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 645395 11862625 ~ 11966903 (-)

Expression


Co-expression Network