lmbr1 (lmbr1)


Basic Information

Item Value
gene id lmbr1
gene name lmbr1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28574908 ~ 28605243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303284.1
ggatttaCCGGAATGCGGTGGGAAAGTAATAACGCCTCTTTGGATGCGCGCAGTGTTTGGTCGGTTGCTAGCTAATCTTTGTTTGAAGCTAGTTCGCGGCAGTATTGGGAAGTCTATGAGCTAAGTGATGTGCATGTGCAATATGAAGAATGGAAGAAGACGATGTCACGATCAGAGAGCAGAATTTCCACAGCCAAGTCCGAGAGTACATTaTCTGTTTCCTGTTGTTTGCTGTGCTGTACATCGTGTCCTACTGCATCATAACTCGCTACAAGAGGAAGAGTGAATTCTTTCTTATTGCGACAGATGACCATGAAGATGAAGATGCAGTCGTTAACAGAATATCtatgtACCTGTGTACGTTCACTCTGGCCGTATCCGGAGGCGCTGTCCTCCTCCTCCCGTTCTCTATAATCAGTAACGAGATCCTTCTGTCGCTCCCCAAGAACTACTACATCCAGTGGCTCAATGGCTCGCTCATCCACGGTCTGTGGAACCTCGTCTCGCTCTTCTCCAACCTGTGTCTCTTCGTCCTCATGCCTTTCGCCTATTTCTTCCTGGAGTCCGAGGGATTCGCCGGCTCTAAAAAGggccTGAAAGCTCGTATCCTGGAGACGTTTGTGATGCTGTTTCTGCTCGCTCTGCTCATCCTGGGCATCGTGTGGGTCGCGTCAGCACTCGTCGACAACGACGCTGCCAGCATGGAGTCTCTCTACgacctGTGGGAGTTCTACCTGCCCTACTTGTACTCGTGTATCTCTTTGATGGGCGGCTTGCTGCTTCTGAtGTGTACTCCAGTGGGTTTGTCCCGCATGTTCACCGTCATGGGCCAGTTGCTAGTCAAACCCACGATTTTGGAGGATTTAGACGAACAGTTGTACTGCATTCAGCTCCAGGAAGAAGCTTTACAGCACAGACTCAATGGTTCAGGCTCCTTTTTACTCGCCACCTCCCAGAATCTCCACAAAGAACTGGAGAGTATACGCTCGCAGAGACACAAGCTGGagaggaggaagaaagcATCAGTTTGGGAGAAGAACCTTCTCTACCCCTTCGTCATGTTAATACTGCTCGCTGGCACgGCGATCTCTGTGTGTTTGGTGGCTCTGAACATTTTGTACCTGCTGGTGGATGAAACTGCGCTACCGAAGGGATCAGCAgatcCCGATATTGGGAATGCATCTCTTTCTACGTTTGGCGTAGTGCAGGCTGTGGTTGAAATCGTCCTCATGATTTACCTGATGGTCTCCTCTGTTGTGGGATTCTACAGTCTTCGCATCTTTCAGGGACTCACGCCCAGGAAGGACGACACCACCATGACCACcATCATCGGTTGCTGTGTGTCCATCCTGGTCTTGAGCTCTGCGCTCCCCGTCATGTCCCGAACTCTTGgaataACGAGGTTCGACTTGTTGGGGGATTTCGGTCGGTTTAACTGGTTGGGGAATTTCTACATTGTGTTGTCGTATAACCTGCTGTTTGCTGTGGTGACCACGCTGTGTTTAATCACCAAGTTCACCTCCGCTGTCCGAGAGGAGCTGCTCAAAGCCCtcgGTCTGGATAAACTGAATCTGTCCACCAGTCCAACGGAACCTGAATCAAATAAGCTAGCGGCGAACGGCCATCAGAAGACGCTCTGAACTCCTCTCTCAATCACACAGTAAAATAGGGTATGGCTGGAGATTTGAAGACGCCTTATtaccacctaaacacacactgtcccaTCAGACGGGTGCGTCCCCTGCAGCAGGACGTTTACAGTGCAGACTTTCATTAAGCCGCTTTATTTAAGCTCCCACCTTCACTTTTCCCCTTCTTTTCCTTTCGTCTTTTCTGTTttcgcgcgcacacacgcgccaTTAGAAGTTTGCGCAttttaatgcagttttaaattctatttttttcccttcttcatGCTGTGAATAAGCGGACTCGGGTAAAAGTGAAAGCATAATCGTCATGTAAATGTTGTATTTGTCTGTATATATTCTTTTGTCATTGTGTAATCTTTtgtacagtgtttttttgtttgttttgtttgttcatgtcCGGAAATTCACCTCTGATGCCTTACGAAACAGGGGAGGATTTTACAGGCGCTTTAATAGTCGTCACATgcagtgagtatgtgtgtgttagacatgTGCCGATGTGTGTGGTGCCCCTGCTGACCCCCTCGACTCTGCTGTCATAGATATCGCTCTATTGGCTGAAGTCGCTCACATGGTGCGTGTGTAACAGTGCTGTTAAATAGAGCTAGCAAGTGTTGCACCAGGGAGTTAGCAGTCGAGTTGCTAAACAATAGCTCACTATCCTGCTAGCTGTTTATCCAGAGGTAAAGACAATGCTAACAAGAAAAGCTGAGCAGTAAGGTGTTCATTCAGTTTGCTAAATCAAATACCATGTTGATTCATAAGAACATGAAGCTGGTATTTTATTTACCAGATTGAATGAACTATTTACTATTTGATTCATTAGAACAAGTTTTGATGTAGTTTGGTAAATCAAGTACAAATGTGGTGTCTGGTTCTGGTGAATCAAATACCAGTGTCATGATTTTCTATTTGATTTATTAGAACAAATCATCAGACTGGTATTTGATGCACCAGGACCAAATGGAATGAACTCTTTCTCTTTGAATCATTAGAACAGGTGATCTGGTAAATCAAGTACCAACGTGTTGTCATGATTTTCCTATTTGATTCATGGCATTTAATTCACCAAAACCAATCAACACTGTACTGTTTGACTCATTAGAACAAGTGTTGACTGGGTCTGGTGAATCGATTCTGATGTTTCAGCAGGAACAAATGAACACAGCACTGCTTGATTTACCAAATCGAATTAACTCTTGATTTGTTCTAATGAATCAAAAATTAAACACGGGTATCTGATTCACAAGAACCAAAGTGACATATTGATACTTGATTTACCAAACCGAATTAACTCTTTACTATTTGATTCATTACAAGAAGTGATGATTCAATTTGGTGAATTTGTTAACTGGTTCTGGTGAATCAAATACCAGTGTCATATTTTACGATTTAATTAGAACATGTTTTCAGACTGGTATTTGATTCAGCAGAACTAAATGAACACATTGGTACTCGATTTACCAAACTGAATCAACACATTACTATTTGATTCATTAGAATTGGTGTTGATTCAGTTTGGTTAATTAAGTACCAGTGTATTGAATCAAATAGCAGAGTCATGATGTTCTAAGTAAATCCAATGAGTTTATTGGTGCTGATGAATCAAATCCCAGTCTGATGGTTTGTTCTAATGAATCAGATAGTACAGTGTGTATTTCTAATATATCGTGGAGCTGATCATCGGCACATGCCTAGTGAATGTTAATGTGGGACGGCTGCGTCTGCGAGCACCTTTTTATAGACAAATTCACTGTGACCCCTCATGTGACCGTCAAATATATGAACAGCCAGTTTACAATGCCAATGATGACATCAAACATCAATGTGTTTCAAATGTTGTTCAAATGAGATTTGGGCTTTTTAAACAGATCTCACATGAGGGACACTGAATTTACAACCTGTGAAAAggtcatttattaaatattaataaataaataagctgacTCGTCACATTTTATGTTCGAATGTAACGCGTGTCTGAAGGACGATTGTTTTTGTAGTAAAGCATATGTAAAAAgtatgcaaatttttttttgtacaaagtCATTGTATAATATGCAAATCatcaaatgtctttttttttgtcttgatttATTTTCGTCGACAACCTCTGgaccataaatataaatgcacgGATCATAATATCGTTACTGAGGGAAGGTTTGTATGTTATACTGTGAAAACAGcaattcattcttttattccaTTACAAGCAGCCAATTTTCTTTGTTCTCTAGTCTGTTTCTCACGTTCAGTTCACAAtgttggaaataaatgttgtttcTCAATGCAAA
>XM_034303285.1
gatttaCCGGAATGCGGTGGGAAAGTAATAACGCCTCTTTGGATGCGCGCAGTGTTTGGTCGGTTGCTAGCTAATCTTTGTTTGAAGCTAGTTCGCGGCAGTATTGGGAAGTCTATGAGCTAAGTGATGTGCATGTGCAATATGAAGAATGGAAGAAGACGATGTCACGATCAGAGAGCAGAATTTCCACAGCCAAGTCCGAGAGTACATTaTCTGTTTCCTGTTGTTTGCTGTGCTGTACATCGTGTCCTACTGCATCATAACTCGCTACAAGAGGAAGAGTGATGACCATGAAGATGAAGATGCAGTCGTTAACAGAATATCtatgtACCTGTGTACGTTCACTCTGGCCGTATCCGGAGGCGCTGTCCTCCTCCTCCCGTTCTCTATAATCAGTAACGAGATCCTTCTGTCGCTCCCCAAGAACTACTACATCCAGTGGCTCAATGGCTCGCTCATCCACGGTCTGTGGAACCTCGTCTCGCTCTTCTCCAACCTGTGTCTCTTCGTCCTCATGCCTTTCGCCTATTTCTTCCTGGAGTCCGAGGGATTCGCCGGCTCTAAAAAGggccTGAAAGCTCGTATCCTGGAGACGTTTGTGATGCTGTTTCTGCTCGCTCTGCTCATCCTGGGCATCGTGTGGGTCGCGTCAGCACTCGTCGACAACGACGCTGCCAGCATGGAGTCTCTCTACgacctGTGGGAGTTCTACCTGCCCTACTTGTACTCGTGTATCTCTTTGATGGGCGGCTTGCTGCTTCTGAtGTGTACTCCAGTGGGTTTGTCCCGCATGTTCACCGTCATGGGCCAGTTGCTAGTCAAACCCACGATTTTGGAGGATTTAGACGAACAGTTGTACTGCATTCAGCTCCAGGAAGAAGCTTTACAGCACAGACTCAATGGTTCAGGCTCCTTTTTACTCGCCACCTCCCAGAATCTCCACAAAGAACTGGAGAGTATACGCTCGCAGAGACACAAGCTGGagaggaggaagaaagcATCAGTTTGGGAGAAGAACCTTCTCTACCCCTTCGTCATGTTAATACTGCTCGCTGGCACgGCGATCTCTGTGTGTTTGGTGGCTCTGAACATTTTGTACCTGCTGGTGGATGAAACTGCGCTACCGAAGGGATCAGCAgatcCCGATATTGGGAATGCATCTCTTTCTACGTTTGGCGTAGTGCAGGCTGTGGTTGAAATCGTCCTCATGATTTACCTGATGGTCTCCTCTGTTGTGGGATTCTACAGTCTTCGCATCTTTCAGGGACTCACGCCCAGGAAGGACGACACCACCATGACCACcATCATCGGTTGCTGTGTGTCCATCCTGGTCTTGAGCTCTGCGCTCCCCGTCATGTCCCGAACTCTTGgaataACGAGGTTCGACTTGTTGGGGGATTTCGGTCGGTTTAACTGGTTGGGGAATTTCTACATTGTGTTGTCGTATAACCTGCTGTTTGCTGTGGTGACCACGCTGTGTTTAATCACCAAGTTCACCTCCGCTGTCCGAGAGGAGCTGCTCAAAGCCCtcgGTCTGGATAAACTGAATCTGTCCACCAGTCCAACGGAACCTGAATCAAATAAGCTAGCGGCGAACGGCCATCAGAAGACGCTCTGAACTCCTCTCTCAATCACACAGTAAAATAGGGTATGGCTGGAGATTTGAAGACGCCTTATtaccacctaaacacacactgtcccaTCAGACGGGTGCGTCCCCTGCAGCAGGACGTTTACAGTGCAGACTTTCATTAAGCCGCTTTATTTAAGCTCCCACCTTCACTTTTCCCCTTCTTTTCCTTTCGTCTTTTCTGTTttcgcgcgcacacacgcgccaTTAGAAGTTTGCGCAttttaatgcagttttaaattctatttttttcccttcttcatGCTGTGAATAAGCGGACTCGGGTAAAAGTGAAAGCATAATCGTCATGTAAATGTTGTATTTGTCTGTATATATTCTTTTGTCATTGTGTAATCTTTtgtacagtgtttttttgtttgttttgtttgttcatgtcCGGAAATTCACCTCTGATGCCTTACGAAACAGGGGAGGATTTTACAGGCGCTTTAATAGTCGTCACATgcagtgagtatgtgtgtgttagacatgTGCCGATGTGTGTGGTGCCCCTGCTGACCCCCTCGACTCTGCTGTCATAGATATCGCTCTATTGGCTGAAGTCGCTCACATGGTGCGTGTGTAACAGTGCTGTTAAATAGAGCTAGCAAGTGTTGCACCAGGGAGTTAGCAGTCGAGTTGCTAAACAATAGCTCACTATCCTGCTAGCTGTTTATCCAGAGGTAAAGACAATGCTAACAAGAAAAGCTGAGCAGTAAGGTGTTCATTCAGTTTGCTAAATCAAATACCATGTTGATTCATAAGAACATGAAGCTGGTATTTTATTTACCAGATTGAATGAACTATTTACTATTTGATTCATTAGAACAAGTTTTGATGTAGTTTGGTAAATCAAGTACAAATGTGGTGTCTGGTTCTGGTGAATCAAATACCAGTGTCATGATTTTCTATTTGATTTATTAGAACAAATCATCAGACTGGTATTTGATGCACCAGGACCAAATGGAATGAACTCTTTCTCTTTGAATCATTAGAACAGGTGATCTGGTAAATCAAGTACCAACGTGTTGTCATGATTTTCCTATTTGATTCATGGCATTTAATTCACCAAAACCAATCAACACTGTACTGTTTGACTCATTAGAACAAGTGTTGACTGGGTCTGGTGAATCGATTCTGATGTTTCAGCAGGAACAAATGAACACAGCACTGCTTGATTTACCAAATCGAATTAACTCTTGATTTGTTCTAATGAATCAAAAATTAAACACGGGTATCTGATTCACAAGAACCAAAGTGACATATTGATACTTGATTTACCAAACCGAATTAACTCTTTACTATTTGATTCATTACAAGAAGTGATGATTCAATTTGGTGAATTTGTTAACTGGTTCTGGTGAATCAAATACCAGTGTCATATTTTACGATTTAATTAGAACATGTTTTCAGACTGGTATTTGATTCAGCAGAACTAAATGAACACATTGGTACTCGATTTACCAAACTGAATCAACACATTACTATTTGATTCATTAGAATTGGTGTTGATTCAGTTTGGTTAATTAAGTACCAGTGTATTGAATCAAATAGCAGAGTCATGATGTTCTAAGTAAATCCAATGAGTTTATTGGTGCTGATGAATCAAATCCCAGTCTGATGGTTTGTTCTAATGAATCAGATAGTACAGTGTGTATTTCTAATATATCGTGGAGCTGATCATCGGCACATGCCTAGTGAATGTTAATGTGGGACGGCTGCGTCTGCGAGCACCTTTTTATAGACAAATTCACTGTGACCCCTCATGTGACCGTCAAATATATGAACAGCCAGTTTACAATGCCAATGATGACATCAAACATCAATGTGTTTCAAATGTTGTTCAAATGAGATTTGGGCTTTTTAAACAGATCTCACATGAGGGACACTGAATTTACAACCTGTGAAAAggtcatttattaaatattaataaataaataagctgacTCGTCACATTTTATGTTCGAATGTAACGCGTGTCTGAAGGACGATTGTTTTTGTAGTAAAGCATATGTAAAAAgtatgcaaatttttttttgtacaaagtCATTGTATAATATGCAAATCatcaaatgtctttttttttgtcttgatttATTTTCGTCGACAACCTCTGgaccataaatataaatgcacgGATCATAATATCGTTACTGAGGGAAGGTTTGTATGTTATACTGTGAAAACAGcaattcattcttttattccaTTACAAGCAGCCAATTTTCTTTGTTCTCTAGTCTGTTTCTCACGTTCAGTTCACAAtgttggaaataaatgttgtttcTCAATGCAAA

Function

symbol description
lmbr1 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Laurin-Sandrow syndrome; acheiropody; hypoplastic or aplastic tibia with polydactyly; and syndactyly type 4. Orthologous to human LMBR1 (limb development membrane protein 1).

NR:

description
limb region 1 protein homolog isoform X2

GO: NA

KEGG:

id description
K25217 LMBR1; limb region 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303284.1 True 3949 mRNA 0.42 17 28574908 28605243
XM_034303285.1 False 3927 mRNA 0.42 17 28574908 28605242

Neighbor

gene id symbol gene type direction distance location
shha shh coding downstream 83061 28476431 ~ 28491847 (-)
ro60 trove2 coding downstream 288250 28276696 ~ 28286658 (-)
cdc73 cdc73 coding downstream 299593 28238896 ~ 28275315 (-)
LOC113540124 NA coding downstream 378851 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 403927 28157829 ~ 28170981 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 5948 28611191 ~ 28619112 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding upstream 14573 28619816 ~ 28628143 (-)
dcaf8 dcaf8 coding upstream 27511 28632754 ~ 28642395 (-)
scp2a scp2,scp2a coding upstream 63736 28668979 ~ 28680704 (-)
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 77229 28682472 ~ 28685576 (-)
G72726 NA non-coding downstream 103137 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 191448 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 195776 28365657 ~ 28379132 (-)
G72658 pfn2,pfn2l non-coding downstream 430042 28081544 ~ 28144866 (-)
G72796 NA non-coding upstream 62080 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 107791 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 177680 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 227141 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 286773 28892016 ~ 28896799 (-)
trnas-uga_2 NA other downstream 338103 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 338641 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 349305 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 533123 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 1018921 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 43081 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 182371 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 268335 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 543395 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 958978 29564221 ~ 29575727 (-)

Expression


Co-expression Network