ssx2ipa (ssx2ip)


Basic Information

Item Value
gene id ssx2ipa
gene name ssx2ip
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 65830 ~ 84464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303311.1
GCTTCCTGCTTAAACACCTGCGTGTTCGCGTGTCACATGGTGCGTTGTGAGCCAATCGGGAAGCCGTATCCTGGTTGCCTGGAGACGGTTGCTCCAATGAGAGTCGGGATTAGTGTTTATGAGGAAACAGTGAAGTATTTCAAACCGACCTGTTTGACGGCGTGTAAACACCTGCAGCTCGCGgattaacagaaataaataaaatataaaaataatataaatactcTACTTATTTAAACTCTTTACTTCAACGTGTTTATGTGGATATGATCATATACAGCTCTCCAGCTTCACGGAGAAATAACTGAAGgactgctttgtgtgtgtgttggagatgGGAGATCAATGGACCCCACAGACGACTGTGATGATGTCAGACCCTTGTCTGgaccCAAAAGACCTGTCGAGCATTTCCCACATCAGTGTgtcccaccacacacacacactcccctccCCACACTCCTACAGCGTGCTGAGTGCCTTCTGTACTGATGACAACATCCCACAATGTGTCACCTATATCAATCAggaagcCAGCTCTCTGGgcctgtgtggtgtgtgtgtggagtccaGGAGTGGTTGTAATGCCCTGAGTGCTGTGCCTGCCCTGAACCTGCTGTACGAGCTCCTCCAGCTGCATAGGAAACAACTGCGCATGCTGCAGGAGCTAGAGCACCGTCAGCTGAAGAGCTCCAGCGACCTAGAGCACCTGCAGCACAACAACTCCCGCCTCAAAgaccAGCTGGAACACACCCGCAGGGAGAACTCAGGTCTTCATGAAGGCGAGCGTCAGCTGCATCTGAAGATCAGGACACTGCAGAGCTGCCTGAAGTCTGAGAAAGAGGAAgtaCAGAAGCTCCAGAGCATCATTGCTAGTCGTGCCACACAGTACAGCCATGATGCCAAAcgcaaagagagagagtgtaccAAACTGAAGGAACGTCTGAACCAACTACTGGTGGACAAGAGGGACAAAAAACTtgcaATTGATGTGGTGAACTGTGTAAGTCGCTCTGATGGGAAGAGAGGAATGTGGAAGACGAGCAGGATGGAGGCGAGacATGAGGGTGAGATGTACCAAGCTCTGCTGAGTGATTATGAGGTCAGACAGCAGGCTCTGATGCAAGAGAATGCTGAGCTGAAGAAGCTGCTACAGCACATGAAGAAGGACATGGTGTCTATTCTCAACCCAAAGACACACTGCAGCAGGACAGAGGACAGCCTGGAACAGgtgaaCTCTGATCCTGAGGATGAGTATGAGGAATGCAGTAAAGAAAATCTGGATCAGATGTGTGTTGACGCACGAGAGCAGCTGACCAACAGCATACGTCTGCAGTGGAGAAGACTAAAgaaccacatgcacacactcgaCACACAagtgtctcaAGAGGAAGTGATCTCCAGGAGGGACCATGAAGAGGCCATGCAGCGCATCAGAGTGGAACTGCAGCAGTGTACagagtttatacacacacaacagcagctACTCCAGCAGCTGGTCTCTCCGTGTGATGAAGACACAGCGGCTCTACTGAATGATGGATACACCCTGGAGGAGAAAGAACGACTGAAGGACGAGTGGAGGATCTTCAACGAGCAGAAGAAAACTtttgagagggagagaaagaactTTACTGAAGCTGCAATACGTCTAGGACACGAgAGGAAGGCATTTGAAGAGGACCGGGCCATGTGGCTGAAGACACAGTTTCTAAACATGACACCATTTATAGAGCGAAAACGACCTGCCACCTCTCACAGCCAATCATCACTCAatgctgaGCCTGAAGCCAAAGTGGTGTCTACTCCAGCTCCCTCAGTCAGGGGTGTGTCGCAAACTGAGTTCTCCACCCCTAAATCTGCCTCTCTGGGTCTGCCCTCCACTGCCGAGCTTTACCGCACACTGCAGCTTCGACCTGATGCCAgGAGTTGCGGCAGACGCAGCAGCAGCACTGAGACATCATCTAGTGACTCttctgctgcacacacacactgaaagagaacacactccatacacacacacacacacacacacacacacacacacacacagaaagagaacacactccatacacacacaca
>XM_034303312.1
ACGGCCATCAGTGCGCATGCGCAAGGGTTAGTACACAGGCAGGCATATAGACATTAAAATCAGGCAGACAGATACAtgtgtttttagaaattttagaaaaatttagaaaaatattcAGACCCTTGGCTAAAATCACTCCAAACTGAGCTCAGgactgctttgtgtgtgtgttggagatgGGAGATCAATGGACCCCACAGACGACTGTGATGATGTCAGACCCTTGTCTGgaccCAAAAGACCTGTCGAGCATTTCCCACATCAGTGTgtcccaccacacacacacactcccctccCCACACTCCTACAGCGTGCTGAGTGCCTTCTGTACTGATGACAACATCCCACAATGTGTCACCTATATCAATCAggaagcCAGCTCTCTGGgcctgtgtggtgtgtgtgtggagtccaGGAGTGGTTGTAATGCCCTGAGTGCTGTGCCTGCCCTGAACCTGCTGTACGAGCTCCTCCAGCTGCATAGGAAACAACTGCGCATGCTGCAGGAGCTAGAGCACCGTCAGCTGAAGAGCTCCAGCGACCTAGAGCACCTGCAGCACAACAACTCCCGCCTCAAAgaccAGCTGGAACACACCCGCAGGGAGAACTCAGGTCTTCATGAAGGCGAGCGTCAGCTGCATCTGAAGATCAGGACACTGCAGAGCTGCCTGAAGTCTGAGAAAGAGGAAgtaCAGAAGCTCCAGAGCATCATTGCTAGTCGTGCCACACAGTACAGCCATGATGCCAAAcgcaaagagagagagtgtaccAAACTGAAGGAACGTCTGAACCAACTACTGGTGGACAAGAGGGACAAAAAACTtgcaATTGATGTGGTGAACTGTGTAAGTCGCTCTGATGGGAAGAGAGGAATGTGGAAGACGAGCAGGATGGAGGCGAGacATGAGGGTGAGATGTACCAAGCTCTGCTGAGTGATTATGAGGTCAGACAGCAGGCTCTGATGCAAGAGAATGCTGAGCTGAAGAAGCTGCTACAGCACATGAAGAAGGACATGGTGTCTATTCTCAACCCAAAGACACACTGCAGCAGGACAGAGGACAGCCTGGAACAGgtgaaCTCTGATCCTGAGGATGAGTATGAGGAATGCAGTAAAGAAAATCTGGATCAGATGTGTGTTGACGCACGAGAGCAGCTGACCAACAGCATACGTCTGCAGTGGAGAAGACTAAAgaaccacatgcacacactcgaCACACAagtgtctcaAGAGGAAGTGATCTCCAGGAGGGACCATGAAGAGGCCATGCAGCGCATCAGAGTGGAACTGCAGCAGTGTACagagtttatacacacacaacagcagctACTCCAGCAGCTGGTCTCTCCGTGTGATGAAGACACAGCGGCTCTACTGAATGATGGATACACCCTGGAGGAGAAAGAACGACTGAAGGACGAGTGGAGGATCTTCAACGAGCAGAAGAAAACTtttgagagggagagaaagaactTTACTGAAGCTGCAATACGTCTAGGACACGAgAGGAAGGCATTTGAAGAGGACCGGGCCATGTGGCTGAAGACACAGTTTCTAAACATGACACCATTTATAGAGCGAAAACGACCTGCCACCTCTCACAGCCAATCATCACTCAatgctgaGCCTGAAGCCAAAGTGGTGTCTACTCCAGCTCCCTCAGTCAGGGGTGTGTCGCAAACTGAGTTCTCCACCCCTAAATCTGCCTCTCTGGGTCTGCCCTCCACTGCCGAGCTTTACCGCACACTGCAGCTTCGACCTGATGCCAgGAGTTGCGGCAGACGCAGCAGCAGCACTGAGACATCATCTAGTGACTCttctgctgcacacacacactgaaagagaacacactccatacacacacacacacacacacacacacacacacacacacagaaagagaacacactccatacacacacaca
>XM_034303313.1
TAGCCCAGTTAGCATTCGGTGCCGATGGCATTAGGTCATCGTCGCGTTTCCTGTTTCCGGTTGTAATCAGTGCCAGTCTAAGCTGGCATCAGGTCCACCTGCCCGGTTAGCGCGTTGCTAAAAGAACAGCTATAACTAAACTAGATTAGCTGTGGCACACTGTGGCTGTGCTTATAAACCACCTCCAGgactgctttgtgtgtgtgttggagatgGGAGATCAATGGACCCCACAGACGACTGTGATGATGTCAGACCCTTGTCTGgaccCAAAAGACCTGTCGAGCATTTCCCACATCAGTGTgtcccaccacacacacacactcccctccCCACACTCCTACAGCGTGCTGAGTGCCTTCTGTACTGATGACAACATCCCACAATGTGTCACCTATATCAATCAggaagcCAGCTCTCTGGgcctgtgtggtgtgtgtgtggagtccaGGAGTGGTTGTAATGCCCTGAGTGCTGTGCCTGCCCTGAACCTGCTGTACGAGCTCCTCCAGCTGCATAGGAAACAACTGCGCATGCTGCAGGAGCTAGAGCACCGTCAGCTGAAGAGCTCCAGCGACCTAGAGCACCTGCAGCACAACAACTCCCGCCTCAAAgaccAGCTGGAACACACCCGCAGGGAGAACTCAGGTCTTCATGAAGGCGAGCGTCAGCTGCATCTGAAGATCAGGACACTGCAGAGCTGCCTGAAGTCTGAGAAAGAGGAAgtaCAGAAGCTCCAGAGCATCATTGCTAGTCGTGCCACACAGTACAGCCATGATGCCAAAcgcaaagagagagagtgtaccAAACTGAAGGAACGTCTGAACCAACTACTGGTGGACAAGAGGGACAAAAAACTtgcaATTGATGTGGTGAACTGTGTAAGTCGCTCTGATGGGAAGAGAGGAATGTGGAAGACGAGCAGGATGGAGGCGAGacATGAGGGTGAGATGTACCAAGCTCTGCTGAGTGATTATGAGGTCAGACAGCAGGCTCTGATGCAAGAGAATGCTGAGCTGAAGAAGCTGCTACAGCACATGAAGAAGGACATGGTGTCTATTCTCAACCCAAAGACACACTGCAGCAGGACAGAGGACAGCCTGGAACAGgtgaaCTCTGATCCTGAGGATGAGTATGAGGAATGCAGTAAAGAAAATCTGGATCAGATGTGTGTTGACGCACGAGAGCAGCTGACCAACAGCATACGTCTGCAGTGGAGAAGACTAAAgaaccacatgcacacactcgaCACACAagtgtctcaAGAGGAAGTGATCTCCAGGAGGGACCATGAAGAGGCCATGCAGCGCATCAGAGTGGAACTGCAGCAGTGTACagagtttatacacacacaacagcagctACTCCAGCAGCTGGTCTCTCCGTGTGATGAAGACACAGCGGCTCTACTGAATGATGGATACACCCTGGAGGAGAAAGAACGACTGAAGGACGAGTGGAGGATCTTCAACGAGCAGAAGAAAACTtttgagagggagagaaagaactTTACTGAAGCTGCAATACGTCTAGGACACGAgAGGAAGGCATTTGAAGAGGACCGGGCCATGTGGCTGAAGACACAGTTTCTAAACATGACACCATTTATAGAGCGAAAACGACCTGCCACCTCTCACAGCCAATCATCACTCAatgctgaGCCTGAAGCCAAAGTGGTGTCTACTCCAGCTCCCTCAGTCAGGGGTGTGTCGCAAACTGAGTTCTCCACCCCTAAATCTGCCTCTCTGGGTCTGCCCTCCACTGCCGAGCTTTACCGCACACTGCAGCTTCGACCTGATGCCAgGAGTTGCGGCAGACGCAGCAGCAGCACTGAGACATCATCTAGTGACTCttctgctgcacacacacactgaaagagaacacactccatacacacacacacacacacacacacacacacacacacacagaaagagaacacactccatacacacacaca
>XM_034303314.1
CGCTTCCTGCTTAAACACCTGCGTGTTCGCGTGTCACATGGTGCGTTGTGAGCCAATCGGGAAGCCGTATCCTGGTTGCCTGGAGACGGTTGCTCCAATGAGAGTCGGGATTAGTGTTTATGAGGAAACAGTGAAGTATTTCAAACCGACCTGTTTGACGGCGTGTAAACACCTGCAGCTCGCGgattaacagaaataaataaaatataaaaataatataaatactcTACTTATTTAAACTCTTTACTTCAACGTGTTTATGTGGATATGATCATATACAGCTCTCCAGCTTCACGGAGAAATAACTGAAGATCCCCTGTGCGTCTGTGTGCGTTTCAGgactgctttgtgtgtgtgttggagatgGGAGATCAATGGACCCCACAGACGACTGTGATGATGTCAGACCCTTGTCTGgaccCAAAAGACCTGTCGAGCATTTCCCACATCAGTGTgtcccaccacacacacacactcccctccCCACACTCCTACAGCGTGCTGAGTGCCTTCTGTACTGATGACAACATCCCACAATGTGTCACCTATATCAATCAggaagcCAGCTCTCTGGgcctgtgtggtgtgtgtgtggagtccaGGAGTGGTTGTAATGCCCTGAGTGCTGTGCCTGCCCTGAACCTGCTGTACGAGCTCCTCCAGCTGCATAGGAAACAACTGCGCATGCTGCAGGAGCTAGAGCACCGTCAGCTGAAGAGCTCCAGCGACCTAGAGCACCTGCAGCACAACAACTCCCGCCTCAAAgaccAGCTGGAACACACCCGCAGGGAGAACTCAGGTCTTCATGAAGGCGAGCGTCAGCTGCATCTGAAGATCAGGACACTGCAGAGCTGCCTGAAGTCTGAGAAAGAGGAAgtaCAGAAGCTCCAGAGCATCATTGCTAGTCGTGCCACACAGTACAGCCATGATGCCAAAcgcaaagagagagagtgtaccAAACTGAAGGAACGTCTGAACCAACTACTGGTGGACAAGAGGGACAAAAAACTtgcaATTGATGTGGTGAACTGTGTAAGTCGCTCTGATGGGAAGAGAGGAATGTGGAAGACGAGCAGGATGGAGGCGAGacATGAGGGTGAGATGTACCAAGCTCTGCTGAGTGATTATGAGGTCAGACAGCAGGCTCTGATGCAAGAGAATGCTGAGCTGAAGAAGCTGCTACAGCACATGAAGAAGGACATGGTGTCTATTCTCAACCCAAAGACACACTGCAGCAGGACAGAGGACAGCCTGGAACAGgtgaaCTCTGATCCTGAGGATGAGTATGAGGAATGCAGTAAAGAAAATCTGGATCAGATGTGTGTTGACGCACGAGAGCAGCTGACCAACAGCATACGTCTGCAGTGGAGAAGACTAAAgaaccacatgcacacactcgaCACACAagtgtctcaAGAGGAAGTGATCTCCAGGAGGGACCATGAAGAGGCCATGCAGCGCATCAGAGTGGAACTGCAGCAGTGTACagagtttatacacacacaacagcagctACTCCAGCAGCTGGTCTCTCCGTGTGATGAAGACACAGCGGCTCTACTGAATGATGGATACACCCTGGAGGAGAAAGAACGACTGAAGGACGAGTGGAGGATCTTCAACGAGCAGAAGAAAACTtttgagagggagagaaagaactTTACTGAAGCTGCAATACGTCTAGGACACGAgAGGAAGGCATTTGAAGAGGACCGGGCCATGTGGCTGAAGACACAGTTTCTAAACATGACACCATTTATAGAGCGAAAACGACCTGCCACCTCTCACAGCCAATCATCACTCAatgctgaGCCTGAAGCCAAAGTGGTGTCTACTCCAGCTCCCTCAGTCAGGGGTGTGTCGCAAACTGAGTTCTCCACCCCTAAATCTGCCTCTCTGGGTCTGCCCTCCACTGCCGAGCTTTACCGCACACTGCAGCTTCGACCTGATGCCAgGAGTTGCGGCAGACGCAGCAGCAGCACTGAGACATCATCTAGTGACTCttctgctgcacacacacactgaaagagaacacactccatacacacacacacacacacacacacacacacacacacacagaaagagaacacactccatacacacacaca
>XM_034303315.1
ACGGCCATCAGTGCGCATGCGCAAGGGTTAGTACACAGGCAGGCATATAGACATTAAAATCAGGCAGACAGATACAtgtgtttttagaaattttagaaaaatttagaaaaatattcAGACCCTTGGCTAAAATCACTCCAAACTGAGCTCAGATCCCCTGTGCGTCTGTGTGCGTTTCAGgactgctttgtgtgtgtgttggagatgGGAGATCAATGGACCCCACAGACGACTGTGATGATGTCAGACCCTTGTCTGgaccCAAAAGACCTGTCGAGCATTTCCCACATCAGTGTgtcccaccacacacacacactcccctccCCACACTCCTACAGCGTGCTGAGTGCCTTCTGTACTGATGACAACATCCCACAATGTGTCACCTATATCAATCAggaagcCAGCTCTCTGGgcctgtgtggtgtgtgtgtggagtccaGGAGTGGTTGTAATGCCCTGAGTGCTGTGCCTGCCCTGAACCTGCTGTACGAGCTCCTCCAGCTGCATAGGAAACAACTGCGCATGCTGCAGGAGCTAGAGCACCGTCAGCTGAAGAGCTCCAGCGACCTAGAGCACCTGCAGCACAACAACTCCCGCCTCAAAgaccAGCTGGAACACACCCGCAGGGAGAACTCAGGTCTTCATGAAGGCGAGCGTCAGCTGCATCTGAAGATCAGGACACTGCAGAGCTGCCTGAAGTCTGAGAAAGAGGAAgtaCAGAAGCTCCAGAGCATCATTGCTAGTCGTGCCACACAGTACAGCCATGATGCCAAAcgcaaagagagagagtgtaccAAACTGAAGGAACGTCTGAACCAACTACTGGTGGACAAGAGGGACAAAAAACTtgcaATTGATGTGGTGAACTGTGTAAGTCGCTCTGATGGGAAGAGAGGAATGTGGAAGACGAGCAGGATGGAGGCGAGacATGAGGGTGAGATGTACCAAGCTCTGCTGAGTGATTATGAGGTCAGACAGCAGGCTCTGATGCAAGAGAATGCTGAGCTGAAGAAGCTGCTACAGCACATGAAGAAGGACATGGTGTCTATTCTCAACCCAAAGACACACTGCAGCAGGACAGAGGACAGCCTGGAACAGgtgaaCTCTGATCCTGAGGATGAGTATGAGGAATGCAGTAAAGAAAATCTGGATCAGATGTGTGTTGACGCACGAGAGCAGCTGACCAACAGCATACGTCTGCAGTGGAGAAGACTAAAgaaccacatgcacacactcgaCACACAagtgtctcaAGAGGAAGTGATCTCCAGGAGGGACCATGAAGAGGCCATGCAGCGCATCAGAGTGGAACTGCAGCAGTGTACagagtttatacacacacaacagcagctACTCCAGCAGCTGGTCTCTCCGTGTGATGAAGACACAGCGGCTCTACTGAATGATGGATACACCCTGGAGGAGAAAGAACGACTGAAGGACGAGTGGAGGATCTTCAACGAGCAGAAGAAAACTtttgagagggagagaaagaactTTACTGAAGCTGCAATACGTCTAGGACACGAgAGGAAGGCATTTGAAGAGGACCGGGCCATGTGGCTGAAGACACAGTTTCTAAACATGACACCATTTATAGAGCGAAAACGACCTGCCACCTCTCACAGCCAATCATCACTCAatgctgaGCCTGAAGCCAAAGTGGTGTCTACTCCAGCTCCCTCAGTCAGGGGTGTGTCGCAAACTGAGTTCTCCACCCCTAAATCTGCCTCTCTGGGTCTGCCCTCCACTGCCGAGCTTTACCGCACACTGCAGCTTCGACCTGATGCCAgGAGTTGCGGCAGACGCAGCAGCAGCACTGAGACATCATCTAGTGACTCttctgctgcacacacacactgaaagagaacacactccatacacacacacacacacacacacacacacacacacacacagaaagagaacacactccatacacacacaca

Function

symbol description
ssx2ip Predicted to enable protein domain specific binding activity. Involved in centrosome cycle and intraciliary transport involved in cilium assembly. Located in centriolar satellite and ciliary basal body. Part of protein-containing complex.

NR:

description
afadin- and alpha-actinin-binding protein-like isoform X1

GO: NA

KEGG:

id description
K06085 SSX2IP, ADIP; synovial sarcoma, X breakpoint 2 interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303311.1 False 2082 mRNA 0.50 14 65830 84463
XM_034303312.1 False 1924 mRNA 0.51 14 65830 83723
XM_034303313.1 False 1960 mRNA 0.51 14 65830 83975
XM_034303314.1 True 2111 mRNA 0.50 14 65830 84464
XM_034303315.1 False 1952 mRNA 0.51 14 65830 83723

Neighbor

gene id symbol gene type direction distance location
bcl10 bcl10 coding upstream 15214 99678 ~ 108094 (-)
LOC113525290 NA coding upstream 93407 177871 ~ 184973 (-)
LOC113525282 LOC108267103 coding upstream 177982 262446 ~ 272620 (-)
LOC117597016 NA coding upstream 219219 303683 ~ 321689 (-)
LOC117597018 NA coding upstream 615585 700049 ~ 704378 (-)
G57488 LOC108268216 non-coding downstream 27877 32764 ~ 37953 (-)
G57502 NA non-coding upstream 73449 157913 ~ 158767 (-)
G57526 NA non-coding upstream 92854 177318 ~ 177548 (-)
G57706 NA non-coding upstream 98592 183056 ~ 183265 (-)
G57711 NA non-coding upstream 108223 192687 ~ 197666 (-)
G57716 NA non-coding upstream 119509 203973 ~ 207155 (-)
LOC117596995 LOC108268238 other upstream 351 84815 ~ 98117 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other upstream 195518 279982 ~ 300017 (-)
G57733 NA other upstream 216516 300980 ~ 856952 (-)
LOC117597012 NA other upstream 262595 347059 ~ 497563 (-)
LOC117597013 NA other upstream 290779 375243 ~ 451693 (-)

Expression


Co-expression Network