crlf1a (crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059)


Basic Information

Item Value
gene id crlf1a
gene name crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30064050 ~ 30084861 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303327.1
TCATAAACTTGGACGCGTCCTGCTAAACGATGACCAAACGGCACGAAGGAGCACGAGCGAGCCATCGTGTCGCGTCAAAGCACGCTGGATAGGCTGGCTTTCctcctccctttctttctttcttttttttttttttttttttgggggacTTAActtaagagacagagagagagagaaagagagagagaaggaaagtcCAGACTGCGGTAGCAacacctcagagagagagagagagagagagagagagagggaagaagatCTTGTACAAGCTCCCCAAGCTCTCCAGTATTCCCAGGAGGAATATTCCCTGTCGCGCGGTAAAGATTCCAGAATTCCTGGGAATGATCACGCGGAGAAGAAGCGCGTCCCGGGACATGATCGTCTTATTGTTTTTCATGCTGCGCGCTCCCGGCGCACACTGCGCGCTCCCTTCCACCCCGATGGCTAGCGTGCATCCTCAGGACCCGGCTCTTCGGATCGGCGCCAGCTTGACCGCCACGTGTTCTGTCGGCACGGACCACGGCCTGCACGCCGGCTCGCTCTACTGGACGCTGAACGGCCGACGGCTTCCCAGCAACACCTACAGCGTGCTCAGCCCCAGCGTCCTCAGCGTCACGCTGAGCAACCTGAGCGGCTCGCGTCAGCGCTCGGGCGACAATCTGGTGTGTCACAGCGGCGGGGGGCACGTGCTCGCCGGGTCCTGTCTCTACGTGGGCATGCCGCCTGAGAAACCCGTGAACCTTACGTGTTGGTCGAGAAACACAAAAGATCTCACCTGCAAATGGGCTCCTGGGGGTCAGGGGGAGACCTTCATCAAGACCAAATACACACTCAAATACAAGCTGAAATGGTACGGCCAGGAGAAAGAGTGCGACGACTACAGCGGCGGGCAGCCGTACACGTGCTACATCCCGCGCGACCTCGCCCTCTTCACGCCCTATGAGATCTGGGTGGAGGCCTCCAACCAGCTCGGGAGCGCCACCTCAGACGTCATCAACCTAGATATCCTGgatgtggTGACGACGGATCCTCCGGCCGATGTGCACGTGAGCCGCGTGGGCGATCTGGATGATCAGCTGACCGTACGCTGGGGAACACCGCCTGCCCTCAAAGACTATCTCTTCCAGGCCAAGTACCAGATCCGCTACAGGCTTGAAGACAGCACCGATTGGAAGGTGGTGGATGACATGGGGAACCAGACGTCCTGCAGGTTGGCAGGGCTCAGGCCGGGGACCGTATACTTCGTCCAGGTGCGCTGTAACCCAGTGGGCATCCTGGGATCGAGGAAGGCGGGTATCTGGAGCGACTGGAGTCATCCGACGGCAGCGTCCACGCCACACAGTGagcGCTCAATGGCAGGGTCGTGCGACTCCAAAGCGGCCCGGCAGAACTCGACACTGCGTCAGGACCTGAAGCAGTTCTTCAGCTGGGTGCGCAAGCGTGTTTCCGACTGCAGCGCCATGAGTATCAAACAATACGACCAGTGGCGCGTCTGGCTGCAAAAGTCTCACAAAACCCGAAACCAGGTTCTTCAAGGAGATAAATCGTAGCAACGTCACCCCCTGGCTGCTGGAATATTGGACAAGATGGGGGATGGTGTGGGGTGGATGGGGGGACAGctagctttctttttcttgccaCGCTAGCTGTGAGTCCTGCTGCAGAAAGACTTGAGAAGGAACAACCTGAGATTTCAAATCCACTGGacacttcattaaaaaaaaagtgcctctTTTTGGTCCATACAGGAAaccagccattttttttaaatgttgattgATACCCATGAAAGATATGGAGGATACCTTGGGCTGGGATTTGCACATTTTGTTCCGAGGATGACGTCACATGATCGTGCTTTCATTTCTGTGATATTATTACATCACAGAAGGCTGCAATATGTAAATGAGCCCCTCTAACTAGTGCCTTAATGTTTTATGATGTGTATATTGTGTGCTAAACGCTCCAGATTTGAGATTTGATCGCAGGATTCACACGAACCAACTTTTTCCGAGTAGCCAAATCGTAATGACATATCAACAAGCAGAATATGTCtgaatacacattttttttgtgtgttttttggtaGTCTTCATGAGTGTCCACTCTTACCAAAGATACCTGTACACTAGGTGTGGGTGATATAGCAGGAATATTACACCATgatatttaaagatatttttcacGTTACACTCTGAACCATAAAATTCCACctcttgaacattttttttttttacatagaaaggtgaatatagtgtagctttaaaGGTTTAAATTTTCTAAAAGGTGATTTTGGTTCAATTATTtaccttaaatctttttttaaaagtacacttTATCCACATTTCCAGCTGAAAGATACATATATGCATTTGTAAGTAGtgccaaaaaaggaaaaagtgcaaaaatgtaaaaaaaaaaaaaatttggtacAAAAATTGAATTTTAACATCCAGTCAGCTACTTGTTACTATGTAACTGCTGACGATATTCCAGAAAATGATGTTTCGTGATATTATCTCGTATCATCCAGCCCTATGATCAGTCATTCATGAGCGTTCCAGTTCTATGCAGTCGTTTATATGTGCATTTTGACAGGAATACCTCACAGGTTGTAATATGCAGATGACCTCATTCATCTAAgttttaataagttaaaaaaatatatatttttcagccaattttttttactgatggTTCTTTTAAAATTTCTAATATCACAATCTCAGTATATAGCAATAAAAATCAGTGTAGtattttgtccatattgtgCAACCCAACTCACAACAATCttggaaaaaatatttccaagattggaaatatataaatatatatattttttaaatagaattcatttattgaattttatgttttgtgttgatgcttaaaccccacacacacacacatgaaccaTCTGGTGTCACCTTTCTGGactaaaagagaaaagaaatttcTCTTGTAAAAATTCGACCGTTAAAACATTTCTACTTCTATTGCAGCGGGACTCGAGATAAACAGCGCAACATCGCAAAGTTTGCGTTCGCAAGATGCAGAAGCCGGGACTGACTGGGTCACCATTCTGTTTATTCAGCGGTGGATTAATCCTCTCACTCTTTTTGCCCTCATGGCTggaattccaaaaaaaaaaaaaaaaaaaactgcaatcgAACTCTGCGGCATCGGGACTGTTAGTAAATaattgtatgtatgtttgtacaATTgtactgctttttatttttgtactgaattgTATCAgcgtatttaaaaaaagtgtaaagttTCTGGCTCTTAAGTTATAAGTAGGTAGTTTGTAATATGACTGaattattaaactgtaatattgAACATCA

Function

symbol description
crlf1a Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in diencephalon; hypothalamus; optic tectum; and telencephalon. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).
crlf1 Enables cytokine binding activity. Contributes to ciliary neurotrophic factor receptor binding activity and cytokine activity. Involved in negative regulation of neuron apoptotic process; positive regulation of cell population proliferation; and positive regulation of tyrosine phosphorylation of STAT protein. Part of CRLF-CLCF1 complex. Implicated in cold-induced sweating syndrome 1.

NR:

description
PREDICTED: cytokine receptor-like factor 1 isoform X2

GO: NA

KEGG:

id description
K24481 CRLF1; cytokine receptor-like factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303327.1 True 3350 mRNA 0.45 8 30064050 30084861

Neighbor

gene id symbol gene type direction distance location
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 7330 30050560 ~ 30056720 (-)
LOC113540054 NA coding downstream 21039 30037408 ~ 30043011 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding downstream 26984 30025069 ~ 30037066 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding downstream 49485 29903744 ~ 30014565 (-)
brinp3b LOC108267163 coding downstream 164524 29868591 ~ 29899526 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding upstream 127528 30212389 ~ 30223320 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding upstream 508845 30593706 ~ 30701045 (-)
LOC113540512 NA coding upstream 636171 30721032 ~ 30724657 (-)
carmil3 carmil3,LOC108268291 coding upstream 1205960 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 1269041 31353902 ~ 31356972 (-)
G73618 NA non-coding downstream 39014 29976671 ~ 30025036 (-)
G73607 NA non-coding downstream 134561 29929264 ~ 29929489 (-)
G73492 NA non-coding downstream 217159 29846674 ~ 29846891 (-)
G73485 NA non-coding downstream 270406 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 283918 29778555 ~ 29780132 (-)
G73652 NA non-coding upstream 10929 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 16579 30101440 ~ 30102870 (-)
LOC113540631 NA non-coding upstream 43867 30128728 ~ 30138872 (-)
G73670 NA non-coding upstream 102035 30186896 ~ 30191121 (-)
G73684 NA non-coding upstream 110818 30195679 ~ 30197576 (-)
G73619 blvra other downstream 41525 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 333193 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 488323 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 892129 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1179085 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 656666 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 688588 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1162199 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1785657 31870518 ~ 31871874 (-)
G74547 NA other upstream 1789448 31874309 ~ 31874827 (-)

Expression


Co-expression Network