ifi44c2


Basic Information

Item Value
gene id ifi44c2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26751636 ~ 26764604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303332.1
GGAGGCATGTTTTATCCTTCACCCTCCCAAGCTGGTAGCTGTCATACATTGGAGAGATCTGACTGACCTTCACGATGAGTGCCATCACATCTAAATTGACCAGACATCAGGAGCTGAAGTTGTGTTCTTTACTTGGTCATGCTAAACTTCTGCTGTTCAAGGCAAGTAAGCATGGCTTCACTGCTTCTGCCTTCCACCAGAAGTGTGATCGTCAGGGGCCCACTGTTACTGTAGCATATAATAACTCAGGCTACATTTTCGGAGCATACATCAGTAAAGATTACGCTCAGACAGGTCAGAACATAGCAGATGACAAAGCCTTCCTGTTCAGCTTCAATGATCATGAGGCTGATAAATCTCCTCTGCGTGTGGTGAGCGCAGATGCCAATTGTTCATTTCAAGATGTGAACACAGGGCCTCATTACGTCTCCTTGGCTTTTCTTTATGATAACACCACCGTGCGCAGCAATCCAGGCACATATAATTTTGACCCAGTGGAGATGCACGGCAATGACCTCAAGCTGATCGAGTTGGAGGTGTACCGAGTGGAGGGTTTTGGATCACTCATGGAGAAACCATGGAGAAACATCGACTGGCATTTGGAGAAGAGGAAAGCTCTGATGCATGAAATCTCACGCTGGACTCCGAGTGCAAGCATGGCACAGAAAGCTCGTGTGTTGCTCGTTGGTGCTGTGGGAGCGGGTAAATCCAGCTTCTTCAACTCTGTTAATTCCGTGTTTAAAGGCTATGTGAACTGCCAGGCCAACACGGGCATCGCTGGCACCAGCCTCACCACACAGttCCGTGCATATTCCATTAAGGCAGATGGTAAGTTTTTGCCGATCACACTGTGCGACACTATGGGACTGGAGGAGGGAGTTAATGCTGGACTGGACATTGACGATTTCACCAACATTTTAAAGGGTCACATTCAGGACAGATACCAGTTTAACCAATCAGTTCCTATCCAAGAGGATTCtccttatttctgtaaaactccGACTGTGAAGGAAAAGATCCACACTGTCGTGTATGTGATGGACACCTGCAAGATCAAACTGATATCTGAAAAGATGATTGAGAAGCTGGCTGCTTTCCGCAAAAAAGCCAACCAcatggGAATCCCACAGCTGGTTCTGTTGACTAAAGTGGATGAAGCGTGTCGTACCGTGGCAGAGGATCTGAAACACATCTATCAGAGCCATTACATCTATAAGATGatgcaGGAAGTGAGTGTACGTCTGGGTATTTCTCTCTCCGCCGTGGTTCCAGTGAAGAACTACAGCAGAGAGCTTGATCTTGACCCACATATCGACATCCTGCTGCTTAATGCCGTTCTGCAGATCATCAGAACCGCTGAGGCATACTTTGATGACTGCTCCTACCAGGAAGAGTAGAAGAGTAGACTCCAGAACACTAGATATCTTTGCTTTGCTTCAGGCTTGAACCTGCATGTTGCTGCTgtttaaatcacatttatgCACAAATTTGTCCTCCTCTGCTGAATATAACTGGCATAAGCagattgtgttttattgtgcttTAAAAGAAATCCCTCTTACCTTCCTGTACATTCACAGTTTTACTGATCTTAGAACACTTTTTGGAatgtaaactgtttttttttctggtcgcAGCAGAGTTTCtgaaagcttaaaaaaaaatattcagaaaagaAGAGAGTGACGTCAAGCACCTTTATATCTCCTGAGCAATCAGATAACTGAAAAAAGTGAGGCATGTTAGTGAGTGAATACAAGGTGGTTAAAGATTCTGTATTAATTGAATGGGTTTATTCTAAACTCTGTTTTGGAACAGACTAGAGTCCTCCTTCACTGGGTTCTGCAGTTCTGGTTGTATGGCTGTTTGTACGGTTCTAGAATGATTAGATGTGCATTATATCACATATGTGCATACGGGATTGGAACAAGGGCTTATTTGCATATTgcgctcatttgcatattgcgTTGTATTTCTCATGGTGTTGTTTtgcattcattaataaacatggCCT

Function

NR:

description
PREDICTED: interferon-induced protein 44-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303332.1 True 2014 mRNA 0.44 9 26751636 26764604

Neighbor

gene id symbol gene type direction distance location
si:dkey-193b15.8 LOC108268053 coding upstream 13358 26735443 ~ 26738278 (+)
nrd1a nrd1a,LOC108268052 coding upstream 16040 26719230 ~ 26735596 (+)
pdcd10b pdc10,LOC108411198,LOC107557361,LOC103039132,LOC107706406,LOC105906142,LOC107684411 coding upstream 55312 26689037 ~ 26696324 (+)
ptx3b NA coding upstream 63622 26685510 ~ 26688014 (+)
klhl6 klhl6 coding upstream 77625 26666239 ~ 26674011 (+)
apoda.1 LOC108267187 coding downstream 2380 26766984 ~ 26770244 (+)
gadd45bb LOC108267448 coding downstream 51457 26816061 ~ 26818849 (+)
sec62 sec62 coding downstream 59082 26823686 ~ 26831573 (+)
elavl1a elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423 coding downstream 82287 26846891 ~ 26854149 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding downstream 92927 26857531 ~ 26865515 (+)
G71519 NA non-coding upstream 83508 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 200610 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 287322 26464011 ~ 26464314 (+)
G71408 NA non-coding upstream 456654 26294755 ~ 26294982 (+)
LOC117597184 NA non-coding upstream 525221 26225431 ~ 26226415 (+)
G71550 NA non-coding downstream 19968 26784572 ~ 26786560 (+)
G71557 NA non-coding downstream 43453 26808057 ~ 26856605 (+)
G71819 NA non-coding downstream 278099 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 309237 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 431397 27196001 ~ 27196373 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 375810 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 458852 26288290 ~ 26292784 (+)
G71385 NA other upstream 522445 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 527598 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 849630 25897017 ~ 25902006 (+)
gng7 NA other downstream 108072 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 620203 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1538247 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1551800 28316404 ~ 28338173 (+)
gng5 NA other downstream 1993941 28758545 ~ 28761451 (+)

Expression


Co-expression Network