LOC113540523 (LOC108267123)


Basic Information

Item Value
gene id LOC113540523
gene name LOC108267123
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31353902 ~ 31356972 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303333.1
GGTTAGTTTACGCAAGGATTAGTAAACGTGGAACCATGTGGGGAAACGACTTCATGTTGTGGTTAAGTGAATATCAGTCCTCTGAGTCAGAGGCTTCAACCCTCCATATCCACGCCCTCTTCTACAGACAGTATTTGGACTTCTCACTCATACTTCAGGAGAAACGAAACTAGCCAGTGTCAGCCTGGTTTTTGGTGctaccaaatttttttttcgaCCAGTACAGATGAAGAAACAGACATGTCTTCAGATCTCAGCTTTACTGCACCCTCAGATGTAGCATGTGATGCATGCCCAGGAAGGAAGCGTAAAGCAGAGCAGTCCTGTTTGCAGTGTTTGGCTTCATACTGCGAAAACCATTTGGACATGCACAACCTTCTGCATGTGGGGAAGAGACACAAGCTGGTGGTGGCTACGGGACAACTCAAACAGAGCGTCTGTCCTGAGCACGACAAACTCATGGAGGTTTTCTGCCGCACAGATCGGCAATGCATCTGCCACCTGTGCattacaaataaacacaaagatCACAATGTCGTCCTGATTGACTATGAGGTGGAGGAAGTGAAACGTAAGCTTGGGAGCACACAGAGGGAGATTACTGACAGGATTCAAACCAGAGAGAGCGAAGTGCGAGAATTAAAACAAGCAATCGAGGCTTTCAAgacatccacAAGGCAGGCAGTGGAGGAGAATGAGAAGAGCTTCACAGAGCTGATCCACTCCATTGAGACGAGACAGAGTGAAGTGAAGGAGCTGATCTTGGCTCAGGAGGAAGCTGCCGTGAAGAAGGCCGAGGAACTTTTGGAGCGATTGCCATCAGAGATCAGTGATCTGAAGAGCAGAGAGTTTGAACTACAGCGTCTGGAGCGGCTCTCTCGAGCAGATAATGGTGTCCATTTTCTACAGGGGATTCTGTCCACTCCAGCATGTTCTTCATCCTCGTCTTCCCCTGTGCTCTTCGTCCATCCATACTCCTCATTTAAGTTCGCCACTGAAGCTGTCTCGGACCTTATAAAGCAGATGAAACATGTTTGCGATTTGCACTTCACCAACATCTCTGTACATGTGCAGACGGCAGAAATTCTGACATCGCCAGTTTCGAAAGTGCGGGAAGCTTTATTGCAGAATGCTTCCAAGCTCACGCTGAACCTCAACACGGCACACGCGTCTTTCCGCTTGTCCAGAGAGAGCAGGGAGGTGACTGCCGTGCACGCGGCACAGGATTACACCGAGCATCCGGACAGATTTGACTGCAGAGCACAAATCCTTTGCAACGAGGGTCTTCAAGGCACGCCGCAGTACTGGGAGGTGGAGTACGGAGGCAGCAGCTGGGTGTGCATCGCTGTGTCCTACATCGGAATCGACAGGAAGGGAAAACGGGGTCCTCTCTTCGGCAGAAACCGCTGTTCCTGGGGCTTACGCTGTTATTCCGCTTCCTACGAATTCTGGCATAATAATAAGCACGTTTCAGTTAAATATAACAAACGTTGCTCCAGAATAGGCGTGTATCTGGATCATGGAATAGGTATTCTGGAGTTTTACAATGTCTCAGATGATATGAGGCTCATCTATAAGGCACAGATCAAGTTTACCGAGCCTGTGTATGCTGGGTTTGGACTGGCAGGGAAAGGGACTCACATCAAGCTCTGTgatttggaggaggaggaaaagaccatgaaggagaaaaacatgttgttttctTACTCGAGTAACAGACTAACATGAAGGAACTGGAATAGAGATtgttaaaatgatataaaacttGTAATGATTTGATCCTTAAGTGCCTTATGGAtgtacagggttttttttgtgtgtgtgtagttctacCAAACCAACAGCAGGGGGCAGAATAGATTGTGACTATGAATCtgattctctccctctctctctctctctctctctctcttttctctgtataGATAACAATAGATAGAAAtttgttacaatggcattttATTGTACTGTACCACAACATTGTTGATTTCTtgaatccgattggtcagaaagtgttctacgttatcatttctataaaacTCATTTACAGATTCTTCTATGGCAGAAGTGTCACTCATTCataaacagattatttaaaaaaacaacattatttaacaaagaaaaacttataatca

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303333.1 True 2135 mRNA 0.45 6 31353902 31356972

Neighbor

gene id symbol gene type direction distance location
carmil3 carmil3,LOC108268291 coding downstream 8918 31290821 ~ 31344984 (-)
LOC113540512 NA coding downstream 629245 30721032 ~ 30724657 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 652857 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 1130582 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 1269041 30064050 ~ 30084861 (-)
LOC113540063 LOC108267709 coding upstream 3675 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 22501 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 171398 31528370 ~ 31533258 (-)
LOC113540064 NA coding upstream 181567 31538539 ~ 31544634 (-)
nmnat2 nmnat2,LOC107658365,LOC107563562 coding upstream 353092 31710064 ~ 31727552 (-)
G74256 NA non-coding downstream 42993 31236413 ~ 31310909 (-)
G74255 NA non-coding downstream 127314 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 237466 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 322522 31030389 ~ 31031380 (-)
G73974 NA non-coding downstream 508420 30777759 ~ 30845482 (-)
G74417 NA non-coding upstream 210079 31567051 ~ 31650584 (-)
G74458 NA non-coding upstream 379320 31736292 ~ 31785757 (-)
G74479 NA non-coding upstream 387379 31744351 ~ 31745462 (-)
G74457 NA non-coding upstream 396149 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 510110 31867082 ~ 31870008 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 76653 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 578083 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 602934 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1331377 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1623045 29724588 ~ 29730857 (-)
LOC117597010 NA other upstream 513546 31870518 ~ 31871874 (-)
G74547 NA other upstream 517337 31874309 ~ 31874827 (-)
G74550 NA other upstream 523062 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 525971 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 548654 31905626 ~ 31910974 (-)

Expression


Co-expression Network