oprk1 (oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938)


Basic Information

Item Value
gene id oprk1
gene name oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22749865 ~ 22757329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303351.1
AGAGTCGGTGTGTGTCTCTGCGGGCGGTTCAGGCAGTTCAGTGCGCTCTGATGTCATCAGGCGGCCACAGCTGGAGCGCCTCTATAGCGCCAGTGCGCGTGAAAAACGCATCCTGTGCGGGAACAAACACGCATCCTACTGCTTTTACCGCGTCGGAGAGTTTCTCTaaggctttttttatttaaacgaACTAACGACAGCACGaggagaTGGATGTCAGCGTGATGCAGATTTTTAAAGAGGATCAGTGCACATCTGGTGTTGAGGAGTGTTTGGTGAACTTGGACTCGCTTTCGGAAGCGCCTCTGAACTCCTCAGGGAATGAGAGCTGGCCGAGTGAGGTCGAGACCCTGTCCCCCATCGTGCCTGTCATCACAGCTGTCTACTCCGTGGTGTTCGTCGTCGGCCTGGTGGGAAACTGCCTGGTGATGTATGTCATTATAAgATACACTAAGATGAAAACAGCCACCAATATCTACATCTTCAACCTGGCAGTTGCTGACGCCCTTGTGACCACCACCATGCCCTTTCAGAGCACAGACTACCTGCTCAACTCATGGCCCTTTGGAGAGGTGGTCTGCAAGGTCTTCATCTCCATTGACTACTACAACATGTTCACCAGCATCTTCACTCTCACCATGATGAGCGTTGACCGCTACGTGGCCGTGTGTCACCCAGTCAAGGCCCTGGATTTCCGCACACCCGTCAAGGCCAAGATCATTaacatcctcatctgggtttTGTCCTCGGCTGTTGGCATCCCGGCTATGGTCCTTGGAAGTACGCAGACCAACAATGGCACTACAGAGTGTGCTCTGCAGTTCCCTGATCCCTATGTCTACTGGGACACACTGATGAAGATCTGTGTATTTGTCTTTGCTTTCGTGGCACCTCTACTcatcattagtgtgtgttacacactgaTGGTGTTGCGATTGAAGAGTGTTCGTCTGCTATCAGGCTCACGTGAGAAGGACCGTAATCTGCGGCGTATCACGCGTCTCGTTCTAGTGGTGGTGGCTGTGTTCGTCGTGTGCTGGACGCCCATTCATATCTTCATCCTGGTGAAGGCTCTGGCGCCTGACGTGCCTGAGACCACAGCCGTCATGGGCGCCTACTTCTTCTGCGTGGCACTCGGCTACACTAACAGCAGCCTCAACCCCATTCTCTATGCCTTTCTGGATGAGAACTTCAAGCGCTGCTTCCGCGATTTCTGCTGCCTGACTCGAAGCAAGGCAGACAATGTGGGAGTGACACGGGTCAGGAGCACCCTCCGCGAGCACACATGCCAGGCAGAGGGCAGAGGTGAGGAAGGCCATGGCAGATCAGTATGACTAGCTGTGGAGCTCTCCTCCTTCCAAGGCCTGGAAATCTCCAGTGACCTGGGATTGACACAGATCACCACCACCTTCTGAGGAGAAGACAGATGAAGATGGGCCTTTTAGGTGCGAGAGCTGTATCCTTAGGGAGTTCATATAAGGAATTGTTCcataatatagtgtataaaatcaGCGTTTCATTCTACTTATGGTTAGCCATGTTCATTTTCCTAGATTCACTTCAGTAGTCTtattaataaatactaaaagCTTATCTCAACAGTTTAACTAAACATAGTCTTATTACCCAGAACGTCTGAAGGGTTCAGAAGAGCTTTAGATTCTGATGGAGTTTCTGGTAAGGTGCTGGTGCTGTTAAGGGATAAAACAGACACCAGTTCCAGTGATTAGCCAAATCAGCTGATTTGCCTGCAATGTGACTTTTTGAAACTTCTACACCATGTACATATTCTGAAGAGGCTTTAATTCTCCCTGTTCATGAACTCGGCTGAAACAGAGGCCAAAGACACCGTCTGATAAATTACGAATGACAGTTGTAGGTGATGCTCCATATCTGAGCATTATGCAGTTGAATTCTCCATTTACGTGAATTATGAAAGAAAATGGAGCTTGATGCAAAGGGAGTTGGATGCAATGGGTTTTACTTCATATGTGGGAATGAAAAAAGAACTATGTGGACATATGAATGGGGATAACTTTTTTGAAGACTGTGAATTAATCATTTTATACAAACATGGCATAATTTCACCAGTgaaacatcagtgtctgattttatttttggaattgtCTTCAGCAACATTTATCTTTGTCTGCAGGAAAATAACTGTTATATATATACTAGACATTAAGAACTGCTGGTTTTCACTGCATTTTGTAAAtgatcatgtgtaaaaaaaaaaaaaaaagtacttgcTTCTTAGGGATTTATGCTaaaaaatcagaatcaaatTTGATATTTAGTCATGGCTAAAAATATTTGATATCAAAAGAGGTATCaagaaaataattcatataCCTCTTGCTGCAAATCTTAGATGTAATTTTTTGGACAGAGGGCtatacaaaaactaaaaaacttGAATCTGTTGTTAAGTTGTTTGTGTTAGATTCCATTTGGTGTCTTACTCGAAAGAGTAAGAAAATATTCACATAGATCTTGGTGACATTTGAACAGAATATCATTGTCAGTAAAGTTGTGATTTCAtctaaacatattaaataatcaTGTGATAAATTATGCTATGGTACTTTTCGATATTGTCTAAAGCAGCACACTGTAAGTCATTAGGGAAAGGAGGTCTTTTCAAATATTTCCATGTTTATGTGTTTGGTCATCTTTGGTCATGCAGTATTGTATATTAATGTAAGTGTTGACTATGTAAATGGGCTtgcctataaataatgattAGTGACAACATCTGTGGCTCTGCAAAACAACATGATCTTAAGGTACTCATACAGTATGTTCTCATTACAgcatagtgcattttattttccaaaacacTTTCGGGAGAGAGGAGTTtggattatattttttaaaaaaaattgtcttgtCACCTTTTTTTTGGAACAGTACCTTTTCCATTGTACTTATTGTAATGTGGTTGTACAGTATGAGATATTGCATTATTACTTacttgctgttttgtttgtttattgcttttgaTTGATGCACTTTCTTCACTTTCTAAAAAGTAAATACAGTAACCAACTATTTGATGATAGGGAGCAATGTCTGGGGCCAGCACGGTGGTGCAGGggccacctcacagctctagggtccccagtttgatcctgaacttGAGTTTTGCCTGCTGTCCCCATATCTGTGTAGTTTTCCTTCAGATTCCCTGGTTACCTCCCACCTGCTAAAAACATTATGGTAGATGATTTGGTCACGCCAAATTGCACCTAGGTgtgattgtgtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcatagtgccctgtgatggattgacATCACACAGGGTGTTCCCAGCATTCCCAGGTTTGGCTCACcttaaccctgaccaggataaaatggttcctgaagatgaatgaatgagtctTGTTTGTGCCAGTAGCTACAGTGTTATGTGGCTTGTATGTAACTTGTGAAAACTATTACTAaattaaacagtgtaataaaataataaaataa

Function

symbol description
oprk1 Enables peptide binding activity. Predicted to be involved in G protein-coupled opioid receptor signaling pathway; neuropeptide signaling pathway; and sensory perception of pain. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in central nervous system. Orthologous to human OPRK1 (opioid receptor kappa 1).

NR:

description
PREDICTED: delta-type opioid receptor-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0042277 peptide binding molecular_function
GO:0004985 opioid receptor activity molecular_function

KEGG:

id description
K04214 OPRK1; kappa-type opioid receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303351.1 True 3534 mRNA 0.43 4 22749865 22757329

Neighbor

gene id symbol gene type direction distance location
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding upstream 12098 22702979 ~ 22737767 (+)
tcea1 tcea1 coding upstream 72665 22670489 ~ 22677200 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding upstream 103427 22641742 ~ 22646438 (+)
ankrd33bb LOC108268146 coding upstream 205278 22538818 ~ 22544587 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding upstream 224099 22504804 ~ 22525766 (+)
chmp5a chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917 coding downstream 8934 22766263 ~ 22769071 (+)
bag1 bag1,LOC107746903,LOC106569734 coding downstream 13644 22770973 ~ 22774754 (+)
myom1a LOC108268132,LOC108440660,LOC107664077,LOC107732591,LOC107556630 coding downstream 19310 22776639 ~ 22805934 (+)
lpin2 lpin2,lipin2,LOC108413408,LOC107686047 coding downstream 51533 22808862 ~ 22837839 (+)
yes1 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding downstream 242582 22999911 ~ 23038154 (+)
G68999 NA non-coding upstream 222309 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 352764 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 362120 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 505040 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 832089 21914806 ~ 21917776 (+)
LOC113540593 NA non-coding downstream 169481 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 244669 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 527225 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 534081 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 573704 23331033 ~ 23331529 (+)
LOC113540463 NA other upstream 97418 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 987564 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1109708 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1425898 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1716112 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 561175 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1270777 24028106 ~ 24106223 (+)
G69971 NA other downstream 1351466 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2101697 24859026 ~ 24871263 (+)
tnr tnr other downstream 2950498 25707827 ~ 25881110 (+)

Expression


Co-expression Network