LOC117596996


Basic Information

Item Value
gene id LOC117596996
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16528806 ~ 16535886 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303398.1
GTTCATGCATCCTGTAGCCCTGCCCTTTCCACAGAGTATAAGAGAAACCATTATATTGAGGAAAATTTTCCCTATGTGCATCCTCAGTCCATTTTTTTGGGGttgatgaaaacagaaatgagcAATATGCTCAGTATATTCccataaatacattaaaagcTCTGCTGAACGATCCTGCTGTGTGGAAAGAATGTTGTATATATGGGAATGAGAGTACACATCTTATTTTAAACGATGTGTGTGATGGATCGCTATTCAAATCCAATCCTCTGTTTACAGAGCCAGTTGTCACCTTAAAGGTAATACTTTATCAAGATGCATTTGAGGTAGTTAATCCCCTTGGCtctgcaaagaaaaaacacaaaatgcttGGGGTCTGCTTCACTCTAGCAAACTTTGATCCTTTTCATCGATCCACTGTAGACAACTTGCAGCTTTTACTTTTGTGCAGAGAAGCTGATTTCAAACATTTTGGCCATGAGAAAGTGTTCTCTCCAGTGATATCAGATCTTAAAGAACTGGAGAGAAATGGACTGAATGCACATGGAAACATTGTGAAGGCAACAGTCTTTTGCATTTCAGGGGATAATTTGGGTTCGCATAATATTGGTGggttcacagaaaactttagtACATGTCACTATTTCTGCCGCTATTGCCATATAACTAGAAGTGAGCTAGACAATTTGGAACACCAGGCTCCAATCCGCACAGTGCAAGACCACAATGACACTGTTCAAGAAGTGCAAAATGGTGATGCACGTGAAGTCAGAGGTTTGAAATTTAACTCTGTCTTTAATTCTCTGGCATTTTTTCATGTCTGTCAGCTAGGCCTCCCACCCTGTATTGGCCATGATTTGTTTGAGGGTGTAGTGGCATCTGACCTTGCCATTTACCTCAACTACTTTGTCAAGGTGAAGAAATTCTTCACATATTCACAACTAAATCATAGGGTCAGGCAGTTTAGTTACCAAGGATCTGACTGTAATTCTACACCctcagaagtttctgaaaagGGTGTAAAACTAGGTGGCCAAGCAACAGAAAACTGGTGTCTGCTGCAGCTTCTACCTGTTATAATCGGTGAAAAGATAACTGATACAGAGAATCAGGTATGGCAGCTGACTGTCCAACTGAAAGAGGTAGTGGAATTGATTTGTGCCCCTAAAATATCAGTACCTCAGGTTGCTTTGCTCAATGTTCAGATCCGTGACTATCTAGAGGGAAAGGAAAGAGTTGTTTCCTACACACAAACTGAAACCAAAGCATCATTACCTCACTCATTACCCTGCATTGATACTGAAATTTGGCCCACTAATGCGGTTATGGACAATGTGGTTCGAAAGCAAGCATTCATACTTCAAAAGATGTGTGCGAAGaaaacaaaatttcaaaaatgtatGTCAAACACTCGCCAGGAACCACCAGTTGCTACAAGCATACCTACATTCAGGTTCCTTTTTTGCACCTTTATTGGTGGTGAAGAACTCCACTCCTTTCCATGCTGAACTGTACAGTAATGCAGTGCGTACTGCTGTAGGACCAACCTTGGTCAAGGAACCCAATACTGTGGCAACTACAGAGGTACAGTGGAAAGGCACTGTGCACAAAAGGGGCTCTTTATCTGTTTCAGCCAAGGCAAGTCAACTGAATTTGGACAAATTGAACTGGTGAAGGAGGAGAAGCATGTGTACTTCATTAATACACCTCATGATGTGTCATATTTGCCAGAGTTTGGTCTATATGAAGTGAAAGAGGCAAGGCCGAGCATGAAGTGCAGAAAAGCAGAACTCAGTGTGGATTATTATCATTACCTCTGTACAAGCTTTTTGGGACAAGAGTCATTTCACTGAAACATAGCATTGTTGACACACAGTAAATGGAAAGAAAGTAAAGATCATTCCAGACTATACACCTCTGTCAGAATACTAGTAccctattttacattttttttttttttttttaaaaaccaagACACACTAGGTTAAATATATAAGGAGCTAGTGAGATTGTACAAAGATTCGACCTTTTGACTCCACCCCAACACAATCTCAAAAGAAAAGCGTAACTTGCGAAACTTGGTAAGTAAACTGCAGTAAATACACCAATGTATGAGCAATATCAGTGAGGGTTGGACTTCCCCAGAGATCTGGAAATTTAACACTGGTTTATGATAATAAAATTTATAGCATTTACCTTAAAATGACTGTATGGGCTAGAGTAATTCAAGTCCCTTTTTCCACTAATAGTCACTTGAGTTATACATAAAAACAATGATGTGAGAAACTAAACTGTCAGTCTCATCTCTCCTGTATAGTCATGGATCGAGGGAGTGCTCTTGCTTCTTTTATTAAATCAACTCTTCCAAAACTAACGGAACTTGAGCCTTTGCTTGAGGTTCTTCAGGAATTAGGAGTCCAGGACCTAGAGGACTTGAACTACATCCAAGAGAGAGACCTTCTTCATGTCTTAAAGCCAGTGGAAGTGAGGAGAATTCTTTCACACTTCAAAACCACAAGCCAAAGAGATGTTAGACAGTCTTCCCAGAAACCAGCTGTTCTCAGATACAGTCCTCAAACACAGCCTGACAAAATGTCCCTTTCTGGTGGCTACAACTCTCCAAGTTCAAACTCGCCGATATCAACATCTAGTTTCATCTGGATTTCACACCTTCTCAACTGTATGACAACAGCTGGCATTTCAGATTTGAAATTCCTTGGAAGAAGATGCCATCTGCCATCATCAGAAAGCTGAAAACAGGGAAGCGACCAACAAAAAGTGAGACTTCAAATAATTCGACTGATTGTTAGTGAAACCTTAACAATATGCCCAACACCTGGGAAGAAACACATAAGTGAGATTGCAAGAAAGATGGTAAAGGCGTATCCTGTGGCATTCAGAGATGTCATTGAAGGTGAAATTGTAGGCAGTGGGTATGATTCAATCACAAAACAAATGATGAGCAGAGTGGATAACTTGAGGAGAGGAACCACTTCACTTTTCTTGAAAAGACAAGCCACTGGCACCAGTGAAGGAGAGGATACTCCACCCAGGAGGAGAAGACTAGACACCTACGGATGTATAAACTGGCAACCAGTGCAGCTACCACCTGATGAAACACCTGAATCTCAAAAAGATGCACAAGAacagttaaagaaaatgtacaaagaAAGATGCCATGACATCAAGCTTATTGAGAATATGACGAGGGCCACCTTCTTCACTCAGAGAAAAGACATTATCAGTGGAATTGAGACATCTGATTTGACAAAGGAATGGCCATATTTATTTGAGACAGTTGGCATGAGGACACATTTTAAAGAGCTTACAGGCCTGGACATTGATGACAAAGCCATAGCAAATAAATGTGCCAGAGTTGTTTCATACCTCAAGTCTAGTGACAAGACAGGGAAGATGGAAACCGTCTTCAGAGAAATGGAAAGATCAAGCAAAAATATTGCAGATGTCAATGCTGCTGGGTTCCTTTAACTACTTCTCAAGCATTTCAGTGAGGAGGAGGATCAGACGTTCTTTAAAGTGGATAAAACAACTCTGCCATCTGAAGTGAACTGTGCTGAACTTCCAAGTACGCCTTGCATAGTTGTGTGTGcaatTGCCTCattggataacgttcctgtcTGTCTTGATTATCCCCGCAGCCATTCATTCATGGAGAAGTCGTTGTTGTCCTGGTCGTAAAAACTGAAACCCTGTTGTAcctctgtttgttctgtgttgttacgctgccttactgtgtttGTTCTTGTATGTCAGTTGTTCCATGTTTCCCCGCTTGGTTCTAGTCACTTGTTTGTATAGTTAATTTGTTGTTCATTACCCTAGTTGTGACtgttagtgttggggaaaaggggacaggtaagtacgtcacgtgacatacatGGTGCAGCATGCAGGAGGTCcgttttatttgtattagacacactaggttaggagcgagcacccccctctgtacttttggtttggctAGTTAGAATAGGTAGTTAGAGCGTCCTGGACGctgaagatttattttctatctttTGTTGTAGTTAGGTTAGAGGGTTTAAAATAGgtagacttgttttgttttgttcatttctttgctttggtgccACTTGCGTCCCTTTTTCCCCTTTGGTGTCCTGTTAAGTGTTATTGTAAATAGTTTGTAAATATTACCACTCTCACCCGGCACTACACACTTTACCACttgtatatagataaataaatcacttggattgatttgc
>XM_034303399.1
GTTCATGCATCCTGTAGCCCTGCCCTTTCCACAGAGTATAAGAGAAACCATTATATTGAGGAAAATTTTCCCTATGTGCATCCTCAGTCCATTTTTTTGGGGttgatgaaaacagaaatgagcAATATGCTCAGTATATTCccataaatacattaaaagcTCTGCTGAACGATCCTGCTGTGTGGAAAGAATGTTGTATATATGGGAATGAGAGTACACATCTTATTTTAAACGATGTGTGTGATGGATCGCTATTCAAATCCAATCCTCTGTTTACAGAGCCAGTTGTCACCTTAAAGGTAATACTTTATCAAGATGCATTTGAGGTAGTTAATCCCCTTGGCtctgcaaagaaaaaacacaaaatgcttGGGGTCTGCTTCACTCTAGCAAACTTTGATCCTTTTCATCGATCCACTGTAGACAACTTGCAGCTTTTACTTTTGTGCAGAGAAGCTGATTTCAAACATTTTGGCCATGAGAAAGTGTTCTCTCCAGTGATATCAGATCTTAAAGAACTGGAGAGAAATGGACTGAATGCACATGGAAACATTGTGAAGGCAACAGTCTTTTGCATTTCAGGGGATAATTTGGGTTCGCATAATATTGGTGggttcacagaaaactttagtACATGTCACTATTTCTGCCGCTATTGCCATATAACTAGAAGTGAGCTAGACAATTTGGAACACCAGGCTCCAATCCGCACAGTGCAAGACCACAATGACACTGTTCAAGAAGTGCAAAATGGTGATGCACGTGAAGTCAGAGGTTTGAAATTTAACTCTGTCTTTAATTCTCTGGCATTTTTTCATGTCTGTCAGCTAGGCCTCCCACCCTGTATTGGCCATGATTTGTTTGAGGGTGTAGTGGCATCTGACCTTGCCATTTACCTCAACTACTTTGTCAAGGTGAAGAAATTCTTCACATATTCACAACTAAATCATAGGGTCAGGCAGTTTAGTTACCAAGGATCTGACTGTAATTCTACACCctcagaagtttctgaaaagGGTGTAAAACTAGGTGGCCAAGCAACAGAAAACTGGTGTCTGCTGCAGCTTCTACCTGTTATAATCGGTGAAAAGATAACTGATACAGAGAATCAGGTATGGCAGCTGACTGTCCAACTGAAAGAGGTAGTGGAATTGATTTGTGCCCCTAAAATATCAGTACCTCAGGTTGCTTTGCTCAATGTTCAGATCCGTGACTATCTAGAGGGAAAGGAAAGAGTTGTTTCCTACACACAAACTGAAACCAAAGCATCATTACCTCACTCATTACCCTGCATTGATACTGAAATTTGGCCCACTAATGCGGTTATGGACAATGTGGTTCGAAAGCAAGCATTCATACTTCAAAAGATGTGTGCGAAGaaaacaaaatttcaaaaatgtatGTCAAACACTCGCCAGGAACCACCAGTTGCTACAAGCATACCTACATTCAGGTTCCTTTTTTGCACCTTTATTGGTGGTGAAGAACTCCACTCCTTTCCATGCTGAACTGTACAGTAATGCAGTGCGTACTGCTGTAGGACCAACCTTGGTCAAGGAACCCAATACTGTGGCAACTACAGAGGTACAGTGGAAAGGCACTGTGCACAAAAGGGGCTCTTTATCTGTTTCAGCCAAGGCAAGTCAACTGAATTTGGACAAATTGAACTGGTGAAGGAGGAGAAGCATGTGTACTTCATTAATACACCTCATGATGTGTCATATTTGCCAGAGTTTGGTCTATATGAAGTGAAAGAGGCAAGGCCGAGCATGAAGTGCAGAAAAGCAGAACTCAGTGTGGATTATTATCATTACCTCTGTACAAGCTTTTTGGGACAAGAGTCATTTCACTGAAACATAGCATTGTTGACACACAGTAAATGGAAAGAAAGTAAAGATCATTCCAGACTATACACCTCTGTCAGAATACTAGTAccctattttacattttttttttttttttttaaaaaccaagACACACTAGGTTAAATATATAAGGAGCTAGTGAGATTGTACAAAGATTCGACCTTTTGACTCCACCCCAACACAATCTCAAAAGAAAAGCGTAACTTGCGAAACTTGGTAAGTAAACTGCAGTAAATACACCAATGTATGAGCAATATCAGTGAGGGTTGGACTTCCCCAGAGATCTGGAAATTTAACACTGGTTTATGATAATAAAATTTATAGCATTTACCTTAAAATGACTGTATGGGCTAGAGTAATTCAAGTCCCTTTTTCCACTAATAGTCACTTGAGTTATACATAAAAACAATGATGTGAGAAACTAAACTGTCAGTCTCATCTCTCCTGTATAGTCATGGATCGAGGGAGTGCTCTTGCTTCTTTTATTAAATCAACTCTTCCAAAACTAACGGAACTTGAGCCTTTGCTTGAGGTTCTTCAGGAATTAGGAGTCCAGGACCTAGAGGACTTGAACTACATCCAAGAGAGAGACCTTCTTCATGTCTTAAAGCCAGTGGAAGTGAGGAGAATTCTTTCACACTTCAAAACCACAAGCCAAAGAGATGTTAGACAGTCTTCCCAGAAACCAGCTGTTCTCAGATACAGTCCTCAAACACAGCCTGACAAAATGTCCCTTTCTGCCTAATTCCCCCCCCCCAGGTGGCTACAACTCTCCAAGTTCAAACTCGCCGATATCAACATCTAGTTTCATCTGGATTTCACACCTTCTCAACTGTATGACAACAGCTGGCATTTCAGATTTGAAATTCCTTGGAAGAAGATGCCATCTGCCATCATCAGAAAGCTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303398.1 True 4247 mRNA 0.41 4 16528806 16535886
XM_034303399.1 False 2774 mRNA 0.40 3 16532777 16535886

Neighbor

gene id symbol gene type direction distance location
zgc:103586 cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619 coding downstream 13958 16506973 ~ 16514848 (-)
LOC113540033 NA coding downstream 24257 16498973 ~ 16504549 (-)
si:dkey-19b23.10 LOC108268326 coding downstream 33336 16482264 ~ 16495470 (-)
si:dkey-19b23.7 si:dkey-19b23.7,LOC108434614,LOC107683551,LOC107597093 coding downstream 58675 16465402 ~ 16470131 (-)
LOC113540674 LOC108268333 coding downstream 78976 16441079 ~ 16449830 (-)
LOC113539955 LOC108267556 coding upstream 16502 16552388 ~ 16564137 (-)
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding upstream 30178 16566064 ~ 16584533 (-)
otub1b otub1,LOC106608596 coding upstream 113299 16649185 ~ 16653787 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding upstream 120054 16655940 ~ 16661187 (-)
adad2 LOC108267669 coding upstream 127243 16663129 ~ 16669417 (-)
G65508 NA non-coding downstream 76914 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 97288 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 99448 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 101399 16427201 ~ 16427407 (-)
G65472 LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155 non-coding downstream 155659 16369532 ~ 16373147 (-)
G65700 NA non-coding upstream 70121 16606007 ~ 16606592 (-)
G65715 NA non-coding upstream 139374 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 192805 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 200267 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 267309 16803195 ~ 16804254 (-)
tnfsf12 tnfsf12 other downstream 102182 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 457114 16054528 ~ 16071692 (-)
smim20 NA other downstream 536821 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 624451 15879471 ~ 15904355 (-)
G64436 NA other downstream 2285125 14232809 ~ 14243681 (-)
leap2 LOC100304644 other upstream 56676 16592562 ~ 16594505 (-)
bmp15 LOC108267203 other upstream 67923 16603809 ~ 16605717 (-)
G66053 NA other upstream 864708 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 903591 17439477 ~ 17444188 (-)
G66281 NA other upstream 1057862 17593748 ~ 17634868 (-)

Expression


Co-expression Network