LOC113539894 (bank1)


Basic Information

Item Value
gene id LOC113539894
gene name bank1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19651897 ~ 19694516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303403.1
ACACACCTTCCTGTATGGAGATCACAGTGCCACTTGCATCTACCCAGACAGAAAGATGAGCAAAACAGGTAAAGAGCTGCTGATCATCTTCGAGCAGGAGGCAGAGCAGTGGGCCTCATACATGCGCTCCATCCTGGCCAGATCTGTTCCGGAGCCGGGCATCTGTTGCTACAACATTGCTATGGTATCCAGTCGGCGAGACAACTTCTTGGAGCTGAATGGCTACAAGTGCAAACTGCTCATCTTGTCGCGGGGTATGCTGGAAGGCATGTGCCAGCTTCGCCGCTTCTTCTTAGCACATGTGCTGAGGCCTGAGGCGTGTGTGGTGGTGCTGCTGTGCGGTGTTGAAAGCCTGGAACCCCTGCTAGAACTCATTCCTTTCAAGGGTGAAGAATGCCTTCAAATCTCAAGTGAACAAGATGCACAGGAGTACCACTCAGCTGTGCTCGACATAATTCGAGGTGGACAGACATCAGCAGTGGACATGAGAATTACTCAGgaaccaaaactggacagaagGCACTCTGCTGGTGCTGGGTTTGCCAAATCCTCTCTGCTAGTCCTGCCCTGTCGTGTTCCTTGTGAGAATCCTGGGGAGGTGTTCCTTCTCCTGCGGCAGGCCATAACCAGTAACGACTTGGAGGTGGAGTTCAGTGGGAGCAAGCAGAAAGTGAGAGTAAAGCCAGTGAACTGGAATGAGAGCACTCTTAGTGTGACTGCTGCAGAATTTCCTGCTGGAAATGTGGCTGTAACACTCTACTGTGGAGGTGTAATGAAAGGCAGCACACACCTACACTACTACAACACTATGGGAGAGATTTCCTGCCTGCTCAAGCAGGCTGCAGACCCGATGAACTTCATGTGTCAGGCTTTTCAGTCGTCCTCCTTAGAGAAGCTGGATCACATTCTAGCTACATGTGTGTTGAAGAAGATGCCTACCGGAGGTTTCCAAGGACTGCAGAATGATCAGACTCTAACTGGAGTATCCCACTCAGAGGACATCCCTACTCTCCTGCACTTTGCGGCGCAGTATGGGCTGAAAGATCTGGCCAGCGTTCTGCTGCAGTGCCCTGGAGCTCAGCAAGCCATGAGAAGCACCAACTGTTTTGGACACACACCTCTGGTGCTAGCACATGCGAATGGACACTCACAGCTCCACATCCTCCTGCAGGAATCACTGGCAAAGAGCAGTGATGATGACACGAGTGATGACACGAGTGTGTATGAGTTGATGGGCAGTACTGTGAATCTGCAGGTTGCTGACAGCCGTGATCAGCCTCACACAGGGGGAGCCAGAGATGCTAAAGTGCAGGTGGAGAAAGACAACAAGCTCTATACACTTGAAGTGAATAATGAAGAATATGACACCATCCTGACCTCTAGCAGCTCAATGGTGATGGCCAACCGACCCCCTGCACCTGCCCCCAGACCTGAGAGTCTCCCCAAAAAGGAGGAGAATGTACCTTACATCGCTCAGGTGTTCCAGAAGAAAATGTCCCAGGGAGACACTGAAACTCTCTACTCTTTTCCTGCCAAGCAAACCAGCGGTCAAGACTCATGCACATACGACACCTTTATGCCAGCGCCGGGACTGGATGAGCTCATTAAACTGCAGGAGCAGGTGAAGAAAGGATCACTCAGCGTGGATGAGGCCCTGGAGAGATTCAGTGACTGGCAGAGGGTTCAGAGAGGATTAGATGGCATCCAACAGGAAAAACTGCGGCAGTTGCGGGCAAGCATCATGAATAACAGAGAAGATGACGACAGCGTCTATGATAAAATCAACATCGTCCATCACACGCCACCTGCAACTACAAAAGAATGCAGAAGAGGAAGCCAGCAAGCAGAGGCGAATTTCTACAGCAAACCCGTCAAAGGACAGCATtcaAATTTCTTTCGGAAAGCAGATAAGCGATAAAAA

Function

symbol description
bank1 Enables enzyme binding activity; signaling adaptor activity; and signaling receptor binding activity. Involved in B cell activation and positive regulation of peptidyl-tyrosine phosphorylation. Located in perinuclear region of cytoplasm. Implicated in autoimmune disease (multiple) and systemic scleroderma (multiple).

NR:

description
PREDICTED: B-cell scaffold protein with ankyrin repeats

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303403.1 True 1921 mRNA 0.51 15 19651897 19694516

Neighbor

gene id symbol gene type direction distance location
LOC113540207 eif5a,LOC107691471,LOC106608670 coding upstream 166751 19481055 ~ 19485146 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding upstream 180935 19455026 ~ 19470962 (+)
LOC113540663 cpz coding upstream 244270 19394155 ~ 19407627 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding upstream 258779 19388605 ~ 19393118 (+)
trmt44 trmt44,LOC107710993 coding upstream 279142 19354380 ~ 19372755 (+)
LOC113539773 LOC108267568 coding downstream 172635 19867151 ~ 19872149 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding downstream 187412 19881928 ~ 19886701 (+)
si:ch73-71d17.2 LOC108267752 coding downstream 249224 19943740 ~ 19953223 (+)
ntn4 ntn4 coding downstream 276795 19971311 ~ 19983277 (+)
LOC113540455 NA coding downstream 374545 20069061 ~ 20075035 (+)
G67262 NA non-coding upstream 10278 19544046 ~ 19641619 (+)
G67271 NA non-coding upstream 30366 19618682 ~ 19621531 (+)
G67236 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 non-coding upstream 150669 19499209 ~ 19501228 (+)
G67227 LOC108267906 non-coding upstream 176423 19474495 ~ 19475474 (+)
G67209 NA non-coding upstream 200505 19382553 ~ 19451392 (+)
G67291 NA non-coding downstream 49124 19743640 ~ 19760630 (+)
G67289 NA non-coding downstream 69744 19764260 ~ 19766422 (+)
G67287 NA non-coding downstream 117448 19811964 ~ 19822848 (+)
LOC117597044 NA non-coding downstream 126662 19821178 ~ 19824259 (+)
trnah-gug_4 NA non-coding downstream 133795 19828311 ~ 19828382 (+)
G66864 NA other upstream 793245 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1443333 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1508266 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1640935 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 2031818 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 296168 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 453279 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1325742 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1619702 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1934560 21629076 ~ 21640157 (+)

Expression


Co-expression Network