si:ch211-119o8.6 (LOC108268351)


Basic Information

Item Value
gene id si:ch211-119o8.6
gene name LOC108268351
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31239568 ~ 31244079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303408.1
ctttgtggaagATCAGACACACTtgatttaatctgtttaatgcAAAACCTAAATAGGTAGAAGACACATTGGTCTATAATTAACATGAAATTGAACCTTAAATGTGTTTTGTCAGGAATAGTAGTAAAGAGGTAGAAATAGTTTAAAACAACCCCTGAAGAGCAACACTTGTTCTCCTCTCCAGAAGATGGTGCTGACATTCCTAATCAGCGTTATAGTCAACCACCATAAAGTCCCAGAGGAAGAAAATCCATGCACATGCAGTGATAAGTGGGCACTGAGTCAAACCTGTCAGTGGTTAACTGTGTGCTTGCACTTGTAGCTGGAAAGATACTGCATTTTCTCCAGTGTGTAGGACCATGACCATGACCATGACCAGGGCTGGAGGGCGAGTTCCCCCTGCAGACAGCACATGTGTGTTCTGTTTGGGAGGCTTGAACAATCCTGTGGTTTTAAGATGTTCCCACAGGTTGTGTAAAAGCTGTGTGCAGAGTTACTGGGAGATGACCTGGTCTCTGAGATGTCCTGTTTGTTTGACAGAGACATCGTGTAAAGTGTCTTTACGAAAAGTGAGTTCTGAGGGAAACACAGAAGGGAAAATGACACATCCAAAGATGTGGCCTCAAAAGGCAGCGAGCACTGTGACTTCAGAGGAGCAGGAAAAGCATGGTACTGCAACGGAGATGAGGCGAAAATATGAACCAATAGAGCTGAAGATATCAGCCTATTTTAACGTCCAGGAAACTGGCACACATGGGTTTAAAGCGGAGGATGTCACTCATTTAATGAAGCAGCCCAGAAGATGCAGATTAAAGGATGAAGAACAGTTTGCAAAAGTTGAGAAGAAAATACTTTCTTCTCATTTGAGATCCACGGCAAGAAAATCTTCCAGTTATGTCCCGAACACAAGTATGGACTCAATGGATCTGAAAGCCCAAACTCCTTCAAATGCACCATCATCTTCAATGGCCTTGAGAGCCAATCTGTGCCCTGAGTGTGGCAAGAGTTTTGAAAGCGAATCAGCCCTGAAAACCCATCAGAAATGCCACTCTGTACAGCGGCCGTATGGGTGCTCCAGCTGTGGAAAGCGATATACTCGGAAGAAGGAACTTGGATTACATCAGCGGCTACATACGAATGAGAGGCTACTCCATTGTGCCTATTGCAAAAAGAAGTTCACAAGGAAGAGAGACCTGATATGCCATGAAAGGAGtcacactggagagaagccTTTCCCCTGTTCTTTGTGTGGGACAAGCTTCAGTAGGAGAAGCGCGCTAAAACTGCATATACAGCGACACAAGGGGATCAAACTGTACCAGTGTGACCAGTGTGGAATGTCTTTCCATACATCAGCAGCCTTGAGGGTACACAAGGCAagacacacaggagaaaagccTTTTGCTTGCCATCAGTGCGATAAGAGATTTGTTCTGAAAGCTCACCTGGACAGTCATTTGCACAAACACGCAGGAGACACGGTCTACAGTTGCTCAGTGTGTGGGAAGGCTTTTAGGTGGAAGCAGAGCCTTACCATCCACCAACTAACTCATCGGGAAGAACGGCCGTTTAAGTGCCCAGACTGTGACAGTAGCTTCAGACGAGCCCACCACCTCAAGTCGCACCAGATGACCCACTCAAGTGACACGCCATACAAATGCAGTCATTGTGGCAAAGCTTTCAAGTACCGGAATTCCCTTAAGATTCATGAACGCATTCATACAGGCGAAAAGCCCTACTGCTGTGATCAGTGCAGGAAGCATTTTGTATCGTCGGGCGAGCTGAGTGTCCATCGGCGAGTCCActcagaaaaaagaaactacAAGTGCTCCGAGTGTGAGAAGACTTTTCGATACATGCCTTCCTTGAAGGTCCACCAGAGAACGCACTCTAAGGAGAGACCGTACCATTGCCGTGAGTGCGGTAAAAGCTTTTTTGCTTCCTCCCATCTCCGAAACCATGAAGAAATGCACAAAAACGAGCGACGCCACCGTTGTTCCGAGTGTGGTCAGGGTTTTAACTGCTCCAGCACTCTGAGGTCCCACCAGATGACCCATTCGACCAGGACGGAGTTCCGTTGCGAGGAATGCGGCAAGACTTTCATCCGCAAAGAAACCTTTAAAACTCACCAACAGATCCATACAGGGGCCAGAGTCTACAATTGCTCGGAGTGCGGAAACAGCTTTAGCAGCTCCAGCAACTTACAGCGACACATGCAGAACCACAAAGTAAAGACAATGTATCACTGCAGCGAGTGTGAGAAGAGTTTCAGTAGCGCGGCATACCTGAAGAAGCACCAGCTAGCCGTGCATGCGGCAGAGATGCCATACGTCTGCGCAGAGTAAGGGGAAAGCTTTGATGCTGCTGCAATGCTGCTAGCTGAAATACTCGAGAGATCCTCGCAGAGTGGGATGAAAGAATcgctaaatttttatttaaaaaataaaaccatgagGACAAACCGGCCTATTGCAGCATGTCCACAGGTGGGGAAAGTTTGTCCTTTATTTCAGTTTGTcagtgtaaattttttttattgtcaatCCAGATGTTTTCCTTCAcaaacttttttcatttcaatatCTGAatggcaaatattttttttatggtttgcccttggtgtgtgttagtgatatTTTCAGGCCAAATGGTAATGtgagtttgtaaaataaatttaatttccaaca

Function

NR:

description
PREDICTED: zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303408.1 True 2687 mRNA 0.45 4 31239568 31244079

Neighbor

gene id symbol gene type direction distance location
copb2 copb2,LOC107567551,LOC107694662,LOC107706339 coding upstream 2667 31222287 ~ 31236901 (+)
LOC113540056 LOC108267180 coding upstream 18548 31218928 ~ 31221020 (+)
clstn2 clstn2,LOC107668970,LOC107738117 coding upstream 27235 31130107 ~ 31212333 (+)
slc25a36a slc25a36,slc25a36a,LOC108440632,LOC107668959,LOC107706334,LOC107694658 coding upstream 210692 31005423 ~ 31028876 (+)
epha4a epha4,epha4a,LOC108440631,LOC107583108,LOC107668967 coding upstream 394465 30781158 ~ 30845103 (+)
prmt5 prmt5,LOC107694666,LOC107668985,LOC107558089 coding downstream 304201 31548280 ~ 31560707 (+)
ap1g2 LOC108267338,LOC108438930,LOC105021476,LOC106569429,LOC100380629 coding downstream 322202 31566281 ~ 31581540 (+)
zp3f.2 NA coding downstream 340021 31584100 ~ 31586755 (+)
LOC113540625 LOC108267346 coding downstream 343182 31587261 ~ 31594687 (+)
dhx9 dhx9 coding downstream 352435 31596514 ~ 31610197 (+)
G74006 NA non-coding upstream 208198 31030388 ~ 31031370 (+)
G74011 NA non-coding upstream 221094 31018111 ~ 31018474 (+)
G73952 NA non-coding upstream 466682 30772602 ~ 30772886 (+)
G73935 NA non-coding upstream 516766 30721031 ~ 30722802 (+)
G73844 NA non-coding upstream 645959 30593150 ~ 30593609 (+)
G74158 rem2,LOC108268350,LOC108442842 non-coding downstream 3011 31247090 ~ 31250757 (+)
G74199 NA non-coding downstream 111475 31355554 ~ 31356121 (+)
LOC117597166 NA non-coding downstream 280024 31524103 ~ 31531196 (+)
G74315 NA non-coding downstream 283777 31527856 ~ 31528070 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding downstream 287374 31531453 ~ 31533223 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 141639 31061730 ~ 31097929 (+)
G73944 NA other upstream 472436 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 761275 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 1558393 29673514 ~ 29681175 (+)
asip2b NA other upstream 1615771 29619993 ~ 29623797 (+)
c4h22orf39 c7h22orf39 other downstream 107122 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 515810 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 714943 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 716790 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 723120 31967199 ~ 31967957 (+)

Expression


Co-expression Network