brinp3b (LOC108267163)


Basic Information

Item Value
gene id brinp3b
gene name LOC108267163
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29868591 ~ 29899526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303426.1
TCACCCTGCAGATAGGCGATAAGGCAAATGCATCATGGTTCATCCTCCTCGCGCGCGCTCACAGCTCGAGTCAATGCGCGTTTCTTATTGCGCTATTAAACTTGTTTGGCTGTCGGATTTGTTGGGGAGGACAACGAAGATTAGACGAATTAGACGATGTTAGTCTGATATGACACTTTTATTATTCTCCCAAGACGCTGCATGTGGATCTCGCGCGCACTCTGCAGATACCAGATCGGATTCGAGACTTACGTGCATTGGACTTAACTGAAGTGGGAGGATTGCTGTGAATAGCgcgcattaaaaaaaaagttagtttgCAGTGAGGTGAGAAAGAAAAGGACTACAAAATCAGGTAAGCTGTATGGATGCTGTAAATGCGACCACCTGTACCGGCTGTGTTTTTGACTTAACGTGCATCACTGAAGCTTTTCTGCGGACTTGACACGCGAGGTACGTTCACGTTACCTTGCAGTTGCAAACCTGGGAAAGCGCGGCGGGCATGCGGCACGCGCGGATGCATGGCCGGGCACGGTGCTCTCCGCgcgctgctcctgctgctgctgctcgtgGCCGCGGGGACGTGCGCAGGGGCCGCGGAGCGCCTCGCGTGGCTGCTGGCGGACAAGGGGCCGTTCCGCCGCGCGCACGAGTTCACCGAGTTCTCCGAGCGACACCAGCACGGTTTCACCACGCGCTACAAGATATACAGGGAGTTTGGCCGATGGAAAGTGAACAACTTGGCTGTGGAGAGGCAGGAAGCAGTGCCCTTTGACCCCGACTTTGTGCGCAACATCAGGCAGCTGGGGCGACAGCCGAGCCTGCAGATGATCACGGACAATATCATCAAGACGTATGGCACTCACTTCCTGGTCTCAGCCACTCTTGGAGGTGAGGAGTCCTTGACCATTTTCGTGGATAAGAGGAAGCTGAGCGAAGCCCATTCAAACAGCGGAGCCGCTAACGGCACGCTGACACTCGAGGCCCTCCATCACCTCGCTGCTTCCTACTTCATCGACCGAGACAGCACGCTGAGGAAACTGCACCACCTCCAGATCGCCTCAGCGGCCATCAAGGTAACTGAGACGAGGACCGGCCCACTTGGCTGTAGCAACTACGACAACCTCGACTCTGTCAGCTCTGTTTTGGTCCACAGCCCTGAGAACAGAATTCAGCTCCAAGGCCTCCAGGTTCTTTTGCCGGAGTACCTCAGGAGCCGGTTCGTGCACGCGGCGCTGAGTTACATTGGCTGCAACGGCGAGGGCCACTTCACGTGCCGGGACGACGACTGCTGGTGTCAATGTAGTGAGGGGCACCCGCAGTGCAACTGCCCCCACGCCAGCCTCCGAGCACAACACAGCAACCTGGAGCACACCAGCGAGGCCTGGAGGCACGCCAACCAGGAGTTTGAGCAATCAGATGAGTTCCAGGCTTTCATGGTCCGATTGTCGACACACGCGGCCCTGAATTTGTCATCAGTGTGGCGCGCGTGGAGGAGTGACGCAGCACTGCTAAAGCGCTACAGGAAGTTGGAGAACGACGCCGTTTTCCTCCTCAACAAAGCGCAAGAAAGCGCCGCTAAACTCTTCAGCCTCAGCCGGAGGTGCCGCTCGCAGCCCAAAATAATCCTGCCAAGggaaagGCATCTCAGTTACTGGCTGCAACGCACCCTTTCCCTTCTGTACTGCGGTGAAACCGAGAGTCCGGGAATCTACTCGGAGGTGACGCGGAGCTGCGTGTGCCCGGGTGGCCACCTGTCCTGCCAGGGTTTGATCCCCTGCTCAGTGGGCACCGGAGGCCGTTGCGCATCATGCTCTCTGGAAAATCGAACACGCTGCTCGAGCTGCAACAGCGGCTTCGCACTGAGTCAAGGATTGTGCCGTCCTGCTGCTCCAAGCCCCACCAAACAGTACCTCGGAACCGAGTCGGAAATGCATGACTCGGAACTGCGTGATCTCCTGGAGCAGCGCGACGGCCACCTAGCCTTATCCGCCGTCTTCGTGAGCAGCGACGTCAAACTCAACACCTGGTTTGAACCTTCATGGAGGAAAAGGATGCTCCTGACTCTAAAGAGCAATAAATCCAAGTCAAGTCGAGTGCACATGCTGCTAGGAATTTCGGTGCAGATTTGCATGACGAAGAACTCGACCCTGGAGCCGACGCTCTCCGTTTCGGTGAACCCGTTCGGTGGGAGTCACTCAGAGAGCTGGACCATGCCAATGAACCATAACGGGTATCCTGACTGGGAGAAAACGAGGTTAGACACCCCTTTAGACTGCTACAACTGGACTTTGATGTTGGGAAACCGCTGGAAGAGCTTCTTCGAAACGGTCCATTTCTACCTGAGGAGCCGAATCCAGAGCGACGGCGCTCAAGGGAACGAGACGGCCGATTCGGAAGTGGCGAACAGAAACGTCTCACAGAATGTCGGCTACATGAAAATTAACAGCATTCAGCTGTTTGGATACAGCGTGCACTTTGACCCGGAAGCTATTCGAGATTTGATCCTGCAGCTGGACTATCCGTACACGCAAGGATCCCAGGACTCGGCGCTGCAGGAGTTGATGGAGATTCGATACCGAGTCAATCGATTATCTCCTGCTGGCCCGACGCCTCTGGACCTTTTCTCGTGTCTCCTTCGACACCGACTCAAACTCTTAACTTCAGAAGTGTTGCGAATTCTTGCGGCGCTGCAGGCTTTCGGCGCCAAACATCGACACTACACAGAGTACGAAGCGGTCAAACtttgtagctaacaagtaacatTCGGATCCaatttattggtttgttttgaTGAAATGTTGACAGTCTgaagtttttgttattttattatgacTGCACTGGTTTTGGTGTTTGATATAGACGGTTTTACTCTTCATAGAGATATTTGTATTTGATGTCTGATGTAGATCAAATGAAACGCAAATGTTTTACCTGCAACGCAAATGTGTTTTCCTGAAAACAATCCCAGCAATGTTGCGAGAtttgaagtaaataaaatgggTAAAATCCTATTTTTAAGTGCCTTAAATGGTGTGTAGCAACTTTAGCAAGCTCCGAACGCTGCGCTCATTGGTACGCAAGGCTGCTTTATTTTCCACTGTTCTCTATAATCAAGAATACTGCCACATAAACAGTTCAAAATAATTCGCTTAATTATTCCATTTCCACTGCACAGCAGGCCACAGCTGCAGAATCGTACACCTCATGATTACTCTTTAAACATTCTCGTTGTGCTCTTATAATATTTTGGATATAATTTTCAGTGAAGTCGCTGTTGATTGTTGAGTTTTAATCTGACGTGCATATCAGATGATGCGTGATTTTTACTTGATGCAAAAGGTTTCATGTCGTAAACACAACACTCGGAGGTGCTCTGTCACACTTTAACAAATAGCCGTCAAGCTTCATGGCCACATGTGGTCTTTTTCTCATcctatattctctctctctgtctctctctgtctctctgtctgtagaagacagatccagttctccTTGCATAAAGAATTATATCTCGGCTGGATTCAGAGTAGAGTTAAGCGCACacagtgaggagttaatacaGAAATCGCACACATTAGTATTCAGGGATGGAGTTTGCCTAAAACTGAGGTGTGTCTTGAGTCCgttttttcttgcatgatatcAGTTCATGCGAGGATCAGAGTTAAATCCGGCGCCATTGTCTGACAGGTTGATGAATAAAATCTACTGAAGAACGAAGTGCGCACaatgatttaatttaacagGAATAGTTACGCAAACGTTTCGAATTTGGAGATTTGTCAGTGTGTAGCCATTTCAAATCACACTTCCCTTTTTAAATGACAACCTAAACAGGATGTTAGGctaattaaacaaaacagattaaaatgtgttgttatttaacaaagaaagaaggatatttgttgatatagtgaagttttctgttaggagatgtttatgtacagtaatatttatggaaggagtctccagtgtcagtgcttttaataCTTAGTGAGGTTTTCCCCCACAGGAAAGTCCTCAGGACagagtttgcatttttttgttgttgttgttgttgttttttacttAACATCACAAGAGAGCCTGGTAAAGGAGCAACTTAaagcttatagctgctataatgtaagtgataacaggagctaacctagcattaaatgtaactgtaaacagtttACAAGTGTGACATGATGTTcgttattaaatgaaaatccCTGGCAAGTCGCTGTGATATGAGCAATTCGTATAGCAGTCATGCTCGATAATTCTGTATTTTAATTGACACAGAAAAGTTTTCCTGATGTAAATCTTTGGACCAGGACAGGTCGTACATGTTGTGTATGATTTAATGAAATAACGTTTCTTTGTCTACGGGCAGGACAAACATTTATAGCA

Function

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303426.1 True 4401 mRNA 0.49 7 29868591 29899526

Neighbor

gene id symbol gene type direction distance location
rgs5b LOC108267191 coding downstream 33400 29833662 ~ 29835191 (-)
nos1apb LOC108267139 coding downstream 43450 29813527 ~ 29825141 (-)
ddr2b LOC108267138 coding downstream 56034 29797070 ~ 29812557 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding downstream 74449 29766208 ~ 29794142 (-)
cdc14aa LOC108267888,LOC108411489 coding downstream 120478 29732265 ~ 29748113 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding upstream 4218 29903744 ~ 30014565 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding upstream 125543 30025069 ~ 30037066 (-)
LOC113540054 NA coding upstream 137882 30037408 ~ 30043011 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding upstream 151034 30050560 ~ 30056720 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 164524 30064050 ~ 30084861 (-)
G73492 NA non-coding downstream 21700 29846674 ~ 29846891 (-)
G73485 NA non-coding downstream 74947 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 88459 29778555 ~ 29780132 (-)
G73444 NA non-coding downstream 102476 29765747 ~ 29766115 (-)
G73448 NA non-coding downstream 102959 29765124 ~ 29765632 (-)
G73607 NA non-coding upstream 29738 29929264 ~ 29929489 (-)
G73618 NA non-coding upstream 77145 29976671 ~ 30025036 (-)
G73652 NA non-coding upstream 196264 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 201914 30101440 ~ 30102870 (-)
LOC113540631 NA non-coding upstream 229202 30128728 ~ 30138872 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 137734 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 292864 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 696670 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 983626 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 1076762 28787614 ~ 28791829 (-)
G73619 blvra other upstream 119980 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 842001 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 873923 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1347534 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1970992 31870518 ~ 31871874 (-)

Expression


Co-expression Network