LOC113540482 (LOC108267690)


Basic Information

Item Value
gene id LOC113540482
gene name LOC108267690
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29596466 ~ 29602830 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303438.1
CAGTCATCATCTAATCTCTGACCAACCGCAAtctgatcttaaaaaaaaaaaaagaggaatcaTTTAATGGTGATTGCAGCTGATCATCCTTGACTGCTGTCCTTTATACACACAGATCCTGAATCTTCTCCCATGTTGTGACCAAAGAAGTGTCTCGTTTTTATCGACTTCTTCCTTCAAACTGTAAGCCTTCGTCCTATGGAGGGCTCTTTGGCTGgacacactacacactcgcACAGGAGAACCTCATCCCTGGGTAGTCTTTCAGATCATGCCAGTGAAGAGAACGGGATGAGAACCAGCACAGACGAGTGGCATGATAGACCACCTGTACCAACCTTACTAGGTTATGAAGTCATGGAGGAAAGGGCAAAGTTTACAGTCTACAAGATCTTGGTGAGGAGAGCACCCGATGAGAGCTGGGTGATTTTTCGGCGCTACACGGATTTCTCCAGACTCAACGACAAGCTCAAAGAATTGTTTCCCAAATTCAGACTCTCTCTGCCTCCCAAGCGTCGCTTTAAAGACAACTACGACATGAACTTCCTGGAGGAGAGACAAGTGGGCTTGCAGGCCTTCCTCCAGAATCTGGTCGCTCAAAAAGACATGACTAACTGTGATGTAGTGAGAGGGTTCCTGTGCTTGGACGATCCACCCGGTCCCTTCGATAGTCTGGAAGAGAGCAAGGCCTACTGCGAGACCCTGGAGGAGACGAACCATCGGCTGCAGAGGGAGCTGCAGGATAAGCAGCGAGAAATCCAGTCTCTTAGAAGAATCTTGGAGGATCGAGAGCTCCAAATCAGCGGGCTGGAGAAAACCAAGAACAGCATCTGTGACGAGTTAAGTGAAGTCCACGCAGTGTGTAGTGAGACCGTGAAGGTAGACGCTCACACAGAGCCGGAAATTGAAGCAGCAAGGACAGACGACGCAAGCGACCCAGACCACAGTTTGGACCCCCAGTTGGCAAAGAGAAGCCATGCAGCTTACTGGAGCGGTTCGGCGTCAGAAGACAGCGAATGTGTGAGCTTCACCAGATCAACATATCTCAAGGACCAGGCTTAGAACTTCCATCGTCTGCATTCTGGAAAGATATATTTGGATTCTTGGAAATTAGTTTGAAAGATCAACGGATCTAAACACCTGGAGCTAAAATGATCTCTGGTGATATTTACAAGCCACgactgtttttttctcagcagAAATATGTTGGAGTGGTCCGAACAGCTGGGCTGAGAAAGATCTGAACTATTTACAAGGTGAGAAGTGAAGGCATCTTAGATGTTACAGAATGCAGATTCTGCGCAGTGCCTTTTTATCTCTGAAATCGccaaacagcacatttttagaAGTGTACATCTGGAGTGGACATTAAGAAgtctgttttattatattttctcgAGGGCTTGACTATATTTGGAGTGCTTTtgagtgtacgtgtgtgtgttcgtgtgtgtgtttgagtctgtgTGCTTATTAATCTATTGCTATTAAGGTGTAGATTAATGCGCTTGCTGTAATACAtgatcgtttccatagtaataACTCATTCAGGGAATAAATAGATTTTcaatgctgttatttaacaaagaacaataTGTGCAATCATTAATATAgcaaaattttctgtaaggagatgtatattcaacatttatggaaggagtctccagtgtcagtgcattgtaacAGTCGGTGCGTTTTCCGCTACGGGACTTTgctctttccagtttctctgaaaCATCACCAACTCCATCTTTTGTCTcattcaaaagagagaaaaaagagagactgctGAGCAAATgtcagtttatagctgctacaacataagCGATGACAGGAACTCATTTGTTTCGCAGATGtcccataacattaaatgtaactataaatctT
>XM_034303439.1
CAGTCATCATCTAATCTCTGACCAACCGCAAtctgatcttaaaaaaaaaaaaagaggaatcaTTTAATGGTGATTGCAGCTGATCATCCTTGACTGCTGATCCTGAATCTTCTCCCATGTTGTGACCAAAGAAGTGTCTCGTTTTTATCGACTTCTTCCTTCAAACTGTAAGCCTTCGTCCTATGGAGGGCTCTTTGGCTGgacacactacacactcgcACAGGAGAACCTCATCCCTGGGTAGTCTTTCAGATCATGCCAGTGAAGAGAACGGGATGAGAACCAGCACAGACGAGTGGCATGATAGACCACCTGTACCAACCTTACTAGGTTATGAAGTCATGGAGGAAAGGGCAAAGTTTACAGTCTACAAGATCTTGGTGAGGAGAGCACCCGATGAGAGCTGGGTGATTTTTCGGCGCTACACGGATTTCTCCAGACTCAACGACAAGCTCAAAGAATTGTTTCCCAAATTCAGACTCTCTCTGCCTCCCAAGCGTCGCTTTAAAGACAACTACGACATGAACTTCCTGGAGGAGAGACAAGTGGGCTTGCAGGCCTTCCTCCAGAATCTGGTCGCTCAAAAAGACATGACTAACTGTGATGTAGTGAGAGGGTTCCTGTGCTTGGACGATCCACCCGGTCCCTTCGATAGTCTGGAAGAGAGCAAGGCCTACTGCGAGACCCTGGAGGAGACGAACCATCGGCTGCAGAGGGAGCTGCAGGATAAGCAGCGAGAAATCCAGTCTCTTAGAAGAATCTTGGAGGATCGAGAGCTCCAAATCAGCGGGCTGGAGAAAACCAAGAACAGCATCTGTGACGAGTTAAGTGAAGTCCACGCAGTGTGTAGTGAGACCGTGAAGGTAGACGCTCACACAGAGCCGGAAATTGAAGCAGCAAGGACAGACGACGCAAGCGACCCAGACCACAGTTTGGACCCCCAGTTGGCAAAGAGAAGCCATGCAGCTTACTGGAGCGGTTCGGCGTCAGAAGACAGCGAATGTGTGAGCTTCACCAGATCAACATATCTCAAGGACCAGGCTTAGAACTTCCATCGTCTGCATTCTGGAAAGATATATTTGGATTCTTGGAAATTAGTTTGAAAGATCAACGGATCTAAACACCTGGAGCTAAAATGATCTCTGGTGATATTTACAAGCCACgactgtttttttctcagcagAAATATGTTGGAGTGGTCCGAACAGCTGGGCTGAGAAAGATCTGAACTATTTACAAGGTGAGAAGTGAAGGCATCTTAGATGTTACAGAATGCAGATTCTGCGCAGTGCCTTTTTATCTCTGAAATCGccaaacagcacatttttagaAGTGTACATCTGGAGTGGACATTAAGAAgtctgttttattatattttctcgAGGGCTTGACTATATTTGGAGTGCTTTtgagtgtacgtgtgtgtgttcgtgtgtgtgtttgagtctgtgTGCTTATTAATCTATTGCTATTAAGGTGTAGATTAATGCGCTTGCTGTAATACAtgatcgtttccatagtaataACTCATTCAGGGAATAAATAGATTTTcaatgctgttatttaacaaagaacaataTGTGCAATCATTAATATAgcaaaattttctgtaaggagatgtatattcaacatttatggaaggagtctccagtgtcagtgcattgtaacAGTCGGTGCGTTTTCCGCTACGGGACTTTgctctttccagtttctctgaaaCATCACCAACTCCATCTTTTGTCTcattcaaaagagagaaaaaagagagactgctGAGCAAATgtcagtttatagctgctacaacataagCGATGACAGGAACTCATTTGTTTCGCAGATGtcccataacattaaatgtaactataaatctT
>XM_034303440.1
CAGTCATCATCTAATCTCTGACCAACCGCAAtctgatcttaaaaaaaaaaaaagaggaatcaTTTAATGGTGATTGCAGCTGATCATCCTTGACTGCTGAAATAAGAGTGGTTCTATTTGCAGTCCTTTATACACACAGATCCTGAATCTTCTCCCATGTTGTGACCAAAGAAGTGTCTCGTTTTTATCGACTTCTTCCTTCAAACTGTAAGCCTTCGTCCTATGGAGGGCTCTTTGGCTGgacacactacacactcgcACAGGAGAACCTCATCCCTGGGTAGTCTTTCAGATCATGCCAGTGAAGAGAACGGGATGAGAACCAGCACAGACGAGTGGCATGATAGACCACCTGTACCAACCTTACTAGGTTATGAAGTCATGGAGGAAAGGGCAAAGTTTACAGTCTACAAGATCTTGGTGAGGAGAGCACCCGATGAGAGCTGGGTGATTTTTCGGCGCTACACGGATTTCTCCAGACTCAACGACAAGCTCAAAGAATTGTTTCCCAAATTCAGACTCTCTCTGCCTCCCAAGCGTCGCTTTAAAGACAACTACGACATGAACTTCCTGGAGGAGAGACAAGTGGGCTTGCAGGCCTTCCTCCAGAATCTGGTCGCTCAAAAAGACATGACTAACTGTGATGTAGTGAGAGGGTTCCTGTGCTTGGACGATCCACCCGGTCCCTTCGATAGTCTGGAAGAGAGCAAGGCCTACTGCGAGACCCTGGAGGAGACGAACCATCGGCTGCAGAGGGAGCTGCAGGATAAGCAGCGAGAAATCCAGTCTCTTAGAAGAATCTTGGAGGATCGAGAGCTCCAAATCAGCGGGCTGGAGAAAACCAAGAACAGCATCTGTGACGAGTTAAGTGAAGTCCACGCAGTGTGTAGTGAGACCGTGAAGGTAGACGCTCACACAGAGCCGGAAATTGAAGCAGCAAGGACAGACGACGCAAGCGACCCAGACCACAGTTTGGACCCCCAGTTGGCAAAGAGAAGCCATGCAGCTTACTGGAGCGGTTCGGCGTCAGAAGACAGCGAATGTGTGAGCTTCACCAGATCAACATATCTCAAGGACCAGGCTTAGAACTTCCATCGTCTGCATTCTGGAAAGATATATTTGGATTCTTGGAAATTAGTTTGAAAGATCAACGGATCTAAACACCTGGAGCTAAAATGATCTCTGGTGATATTTACAAGCCACgactgtttttttctcagcagAAATATGTTGGAGTGGTCCGAACAGCTGGGCTGAGAAAGATCTGAACTATTTACAAGGTGAGAAGTGAAGGCATCTTAGATGTTACAGAATGCAGATTCTGCGCAGTGCCTTTTTATCTCTGAAATCGccaaacagcacatttttagaAGTGTACATCTGGAGTGGACATTAAGAAgtctgttttattatattttctcgAGGGCTTGACTATATTTGGAGTGCTTTtgagtgtacgtgtgtgtgttcgtgtgtgtgtttgagtctgtgTGCTTATTAATCTATTGCTATTAAGGTGTAGATTAATGCGCTTGCTGTAATACAtgatcgtttccatagtaataACTCATTCAGGGAATAAATAGATTTTcaatgctgttatttaacaaagaacaataTGTGCAATCATTAATATAgcaaaattttctgtaaggagatgtatattcaacatttatggaaggagtctccagtgtcagtgcattgtaacAGTCGGTGCGTTTTCCGCTACGGGACTTTgctctttccagtttctctgaaaCATCACCAACTCCATCTTTTGTCTcattcaaaagagagaaaaaagagagactgctGAGCAAATgtcagtttatagctgctacaacataagCGATGACAGGAACTCATTTGTTTCGCAGATGtcccataacattaaatgtaactataaatctT
>XM_034303441.1
CAGTCATCATCTAATCTCTGACCAACCGCAAtctgatcttaaaaaaaaaaaaagaggaatcaTTTAATGGTGATTGCAGCTGATCATCCTTGACTGCTGTCCTTTATACACACAGATCCTGAATCTTCTCCCATGTTGTGACCAAAGAAGTGTCTCGTTTTTATCGACTTCTTCCTTCAAACTGTAAGCCTTCGTCCTATGGAGGGCTCTTTGGCTGgacacactacacactcgcACAGGAGAACCTCATCCCTGGGTAGTCTTTCAGATCATGCCAGTGAAGAGAACGGGATGAGAACCAGCACAGACGAGTGGCATGATAGACCACCTGTACCAACCTTACTAGGTTATGAAGTCATGGAGGAAAGGGCAAAGTTTACAGTCTACAAGATCTTGGTGAGGAGAGCACCCGATGAGAGCTGGGTGATTTTTCGGCGCTACACGGATTTCTCCAGACTCAACGACAAGCTCAAAGAATTGTTTCCCAAATTCAGACTCTCTCTGCCTCCCAAGCGTCGCTTTAAAGACAACTACGACATGAACTTCCTGGAGGAGAGACAAGTGGGCTTGCAGGCCTTCCTCCAGAATCTGGTCGCTCAAAAAGACATGACTAACTGTGATGTAGTGAGAGGGTTCCTGTGCTTGGACGATCCACCCGGTCCCTTCGATAGTCTGGAAGAGAGCAAGGCCTACTGCGAGACCCTGGAGGAGACGAACCATCGGCTGCAGAGGGAGCTGCAGGATAAGCAGCGAGAAATCCAGTCTCTTAGAAGAATCTTGGAGGATCGAGAGCTCCAAATCAGCGGGCTGGAGAAAACCAAGAACATCTGTGACGAGTTAAGTGAAGTCCACGCAGTGTGTAGTGAGACCGTGAAGGTAGACGCTCACACAGAGCCGGAAATTGAAGCAGCAAGGACAGACGACGCAAGCGACCCAGACCACAGTTTGGACCCCCAGTTGGCAAAGAGAAGCCATGCAGCTTACTGGAGCGGTTCGGCGTCAGAAGACAGCGAATGTGTGAGCTTCACCAGATCAACATATCTCAAGGACCAGGCTTAGAACTTCCATCGTCTGCATTCTGGAAAGATATATTTGGATTCTTGGAAATTAGTTTGAAAGATCAACGGATCTAAACACCTGGAGCTAAAATGATCTCTGGTGATATTTACAAGCCACgactgtttttttctcagcagAAATATGTTGGAGTGGTCCGAACAGCTGGGCTGAGAAAGATCTGAACTATTTACAAGGTGAGAAGTGAAGGCATCTTAGATGTTACAGAATGCAGATTCTGCGCAGTGCCTTTTTATCTCTGAAATCGccaaacagcacatttttagaAGTGTACATCTGGAGTGGACATTAAGAAgtctgttttattatattttctcgAGGGCTTGACTATATTTGGAGTGCTTTtgagtgtacgtgtgtgtgttcgtgtgtgtgtttgagtctgtgTGCTTATTAATCTATTGCTATTAAGGTGTAGATTAATGCGCTTGCTGTAATACAtgatcgtttccatagtaataACTCATTCAGGGAATAAATAGATTTTcaatgctgttatttaacaaagaacaataTGTGCAATCATTAATATAgcaaaattttctgtaaggagatgtatattcaacatttatggaaggagtctccagtgtcagtgcattgtaacAGTCGGTGCGTTTTCCGCTACGGGACTTTgctctttccagtttctctgaaaCATCACCAACTCCATCTTTTGTCTcattcaaaagagagaaaaaagagagactgctGAGCAAATgtcagtttatagctgctacaacataagCGATGACAGGAACTCATTTGTTTCGCAGATGtcccataacattaaatgtaactataaatctT

Function

NR:

description
PREDICTED: sorting nexin-16-like isoform X1

GO: NA

KEGG:

id description
K17928 SNX16; sorting nexin-16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303438.1 False 1887 mRNA 0.44 8 29596466 29602830
XM_034303439.1 False 1871 mRNA 0.44 8 29596466 29602830
XM_034303440.1 True 1911 mRNA 0.44 8 29596466 29602830
XM_034303441.1 False 1884 mRNA 0.44 8 29596466 29602830

Neighbor

gene id symbol gene type direction distance location
LOC113540073 NA coding upstream 37341 29554015 ~ 29559125 (+)
ccdc39 ccdc39 coding upstream 42919 29541983 ~ 29553547 (+)
dcun1d1 dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878 coding upstream 56451 29534634 ~ 29540015 (+)
b3gnt5b b3gnt5 coding upstream 82687 29500475 ~ 29513779 (+)
tbl1xr1b tbl1xr1b,LOC108267995,LOC108437519,LOC103032574,LOC107656866,LOC103359463,LOC107568629 coding upstream 99881 29481242 ~ 29496585 (+)
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding downstream 101658 29704488 ~ 29720768 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding downstream 149241 29752071 ~ 29760972 (+)
rgs18 LOC108268317,LOC108428888 coding downstream 364841 29967671 ~ 29976291 (+)
rgs1 LOC108267137 coding downstream 383355 29986185 ~ 29989435 (+)
rgs13 LOC108268340 coding downstream 395674 29998504 ~ 30001345 (+)
G73092 NA non-coding upstream 55031 29541095 ~ 29541435 (+)
G73089 NA non-coding upstream 69548 29526202 ~ 29526918 (+)
G73088 NA non-coding upstream 71630 29524298 ~ 29524836 (+)
G73072 NA non-coding upstream 72224 29483262 ~ 29524242 (+)
G73118 NA non-coding downstream 26763 29629593 ~ 29629823 (+)
G73151 NA non-coding downstream 109640 29712470 ~ 29712682 (+)
G73154 NA non-coding downstream 115632 29718462 ~ 29719317 (+)
G73123 NA non-coding downstream 119236 29722066 ~ 29723750 (+)
G73155 NA non-coding downstream 129821 29732651 ~ 29733363 (+)
fubp1 fubp1 other upstream 400317 29181767 ~ 29196149 (+)
G72873 NA other upstream 684362 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 799307 28792847 ~ 28797159 (+)
gng5 NA other upstream 835015 28758545 ~ 28761451 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 1258293 28316404 ~ 28338173 (+)
asip2b NA other downstream 17163 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 70684 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 851927 30454757 ~ 30478293 (+)
G73944 NA other downstream 1143301 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1458900 31061730 ~ 31097929 (+)

Expression


Co-expression Network