LOC117597004


Basic Information

Item Value
gene id LOC117597004
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20413925 ~ 20419029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303463.1
TCCGTTTTAGGGGTAAAATTCCGGAAAACATTCAAGTCGCACTTTGTGAAGAGAAAAGACATGTTTCAGAAAAGCAGACTTTCAGAAGAAATGACTGCTGCTTTCAAGACATCCAAGAAAAATCAGAGCTTACCTCTGGTGAAACCTACCACACACCATTATCCACAGGCATCCCCTCTTCAGGATTCTCCGTCAACAGCATCCACAAAAGCTCTACCTGGAAAAAGAGAAGCGCTCCTAGAGCAGCTAAAAATGCAGAAGTTTAAAGCTTCTGGAAATGCTGAGGAAGCTCTCTCCGCTAAGGTGGAGCGTCTCCTCAAGTTCCAGGCTCCTGCTCCACCCACTGTCCCCAGAAGAGGACGTGGGTTGCGGCCAGCCCAGCAGGAGACTCTAGAGCGTGTAAAGGCTCATCAGCCTGACATGAACATATCACGAGGCTCTCAGTGGGTGACTGAGTATACGGAAAACTTTGGTTTCCCGCAAACTGTCCACCCAACTTGTGCTTCAAAGAAAACTGCATACCCTTTGGCCTCGATCTTTCAGAGCACACCTGCTACTCTGTTTGCAGACAAGTATCGACGCACCGAATACCAGGCCATCTACGGTCCTAAGATCCGCACTGCTCTTTTCAACGTTACTCTGTACCGACAGATCCATGGTACAGCTTAAAAGCAGGTCTTCGGGCgccaaatgtaaaaatttaatGCTCTTTTCTcagatacagtggatataaaaagtcacaACCCTCTcttaaaactgcaggtttttgtgatgtaaaaaaagacacaaagatCAATCCACATGAATATagccaaataataaatatatccactgtatattagAAAGAGTAATTCATGAAGCTTGTTTGGGACCTCGATACATTTGGCGCCCCATATTCCATGGATGTCTGAATATGAGGAGAACTGCAAATTCTTCGGCCTCATCACATCAAGACCGCCAGTCTATTTGCAGAGAAGTatacacatcaaacaccagagcATCCAGTGGCTGACAAAATAGTGCAAAGAAAAGTTCCCAGaccaaaaaaatagaaagaaaaaaaaaaaaagagcaaaatgtgctgtgctctcagggagggaggggtggcattatctctctcctctatcaatcacagtgacactagccaatcatgggcgtcttTGAGCTCATGAGCGTGGAAGCAGGCGGATAgtactttcctctgagtgtgtgatgCCGCCCTctgatgttgcatgagcagcagtttgaaaaagatGCTGGCTTGGAAGAAGGACGTGATAGTCTTTGCCCTTCCTGGTTGTAGCTGTAGTGGAGAAATCGGAAGAAATAGGGAGAaaattgtggggaaaaaaaatttaaacaaacagaatGATTAATAgaattattgtttgttttgtctcttAAATACTTATAGAGGCTTGAAATTGATGAgaatttgcttatttaaatatgttcattAATCACTTTTCTAGCCTTTTTAGGACCTGCAGACCCGCAGATGCCATTTCAACATCTCTGTGTACTAACATACCCACAGACTTTCACAAGCGGCTTTAAAAATTAGGGCTTGGGCTTGGTGTGAGAAAATATACAGCTGAGTGAGCAAGTTGCTATGaaatgctatgctatgctatttATCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303463.1 True 1642 mRNA 0.43 7 20413925 20419029

Neighbor

gene id symbol gene type direction distance location
focad focad,LOC101469292 coding downstream 190057 20165711 ~ 20223868 (-)
LOC113540737 NA coding downstream 270036 20143784 ~ 20143889 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding downstream 270395 20132759 ~ 20143530 (-)
amdhd1 amdhd1,LOC107683519,LOC107738078 coding downstream 455978 19953165 ~ 19957947 (-)
si:ch211-212k18.7 LOC108267884 coding downstream 495497 19911733 ~ 19918428 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding upstream 6562 20425591 ~ 20444949 (-)
men1 men1,LOC107679288,LOC107731945 coding upstream 28227 20447256 ~ 20455462 (-)
si:dkey-106g10.7 LOC108267586 coding upstream 60231 20479260 ~ 20485658 (-)
ecsit ecsit coding upstream 78651 20497680 ~ 20504408 (-)
peli3 LOC108267165,LOC108440836,LOC107731914,LOC102800049,LOC103027529,LOC100695529 coding upstream 242697 20661726 ~ 20677144 (-)
G67891 NA non-coding downstream 86364 20297322 ~ 20327561 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding downstream 281888 20127626 ~ 20132037 (-)
G67719 NA non-coding downstream 346866 20066063 ~ 20067059 (-)
G67562 NA non-coding downstream 583175 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 589006 19769357 ~ 19824919 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 140349 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 151370 20570399 ~ 20570930 (-)
G68106 NA non-coding upstream 211137 20630166 ~ 20631710 (-)
G68107 NA non-coding upstream 216503 20635532 ~ 20635793 (-)
G68108 NA non-coding upstream 216875 20635904 ~ 20636199 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 448074 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 470091 19919480 ~ 19943834 (-)
G67587 NA other downstream 525199 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 532285 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 1258704 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 359509 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 885663 21304692 ~ 21313897 (-)
G68462 NA other upstream 907017 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 935590 21354619 ~ 21371010 (-)
G68760 NA other upstream 1515497 21934526 ~ 21935169 (-)

Expression


Co-expression Network