LOC117597006 (LOC108267494)


Basic Information

Item Value
gene id LOC117597006
gene name LOC108267494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16197701 ~ 16204202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303466.1
AGCAGGAGACAGATCTGACAATAACTGATCTGACAGTAACTGATCTGACAGTAACTGATCTGACAATGACGGAGCAAAGAAGGTGCCACAATCCTAAAGACAGCACCCTGAGATTTGTCACTAGAGCGGATGACATTACCCTTGATGATGATCCCAATACCCAGAGATTAGAGATGTCTTGTGGCCACGCTGTCACGCCTGAATCCCTCACAGCCTACTGTCGCAGTCTTCTGGATAAGGGTGACTACAAATTCGTGTGTCCAGCTATAAAGCAGGGAACTGATACATGTGGGGCTGAGTGGCCATACATGGAAGTGCGGAGGATTGCTTTACTGACTCAAGAAGAGCAGAACCACTTTGAAGAGACAATGGCTGTATTGGCAGCAGCTAAGTACTGTGAATACAACCCAtgcccCGGTTGCAATTCATATGTTGAGAGGCAGGATTTGACCAACCTCTGTGTACTCTGCACCATCTGTACATCAGATACTGGTGAGAGGTTTGAGTTCTGCTGGCAGTGTCTGAAGACGTGGAAAGGGCCAGCACCTCGCTCAGACAAGTGTGACAACAGCAACTGTGTTAACCCAACACTTGAGAAGCTATTAAATTGTAAGGACACAACCCTTCCTGAGGTTCAAGACCTAATATGTCCCTCACTGCGAGCTTGTCCTACATGTGGAAACCTGGTAGAGCATGACACAACAGGGTGTAAGAATATAATATGTAATCGCTGCCATATTGAATTCTGCTTTTCTTGTCTGAAGATAACTGAAGATTGTCTAGAAACAAGCTCATACTTTAAACCTTGCTCAGATGGTGTAGCACCTCGGCAAACATCCATTCCAACCTGGAGAAAGTAGGTAATTGAAATCTTGGCATAATATAAACACCAAAAAGCACATTTTGTGTCTGCTTAAGTGTTTCTATGAGTATAGcttaatagtttaataatatAGGATAATACAATCTAAATGCAATATGATCAAAAGTAAAGCACAGCTGTCTTCAGGCTATATTGAAAAGTATAATATGTTTGTCTTTATTGTTATTAGTTTTATAACATAATTTTGATTATCACAGAAAAGATAGACTGAGCTTTTTAGTTCAaaaggcctcatttatcaagctgagTATGAACTgctttattcataaattgttcaTGGGGCATTTATGCAataaatttggtattcatgaagaTCCTGTAAGTTTAGAAAGTGTCTTGAAGGCTcttcatttgtaaacaatccttctggctgtagaatggtgaatttcaaattgatggagatggccttataacccttcctaGATTTATGAGCAGCAATAATTCTTCTCtcaggtcatggctgatgtcctttcttcttggcatgatgtagacacacgaGTGCTGCCAAACTGCCAAAATTTCTGATTTTATAGAGGTACTTACACTTCtcgatgattaactaatcttgtgtgtttcattagtaacacctggctgctaattactctcttaataaTTGTGGTAGTAGGAAGGGTAGTTGGTGAAAAtaactacatattgaaatttgttgtgtttttttttgtttgtttgtttgcttatagaagttggtgaggaccacacaattgttatttaggctctgataaataaaaacatagaattgaaagaGGTTGTACTTTCTTTTTAGCATGACCGTAGTTTGCTatgagttactgcacttttatatacagattatgctGTCAAGCTTCTAACCTGAAGTCGCCAAGATTctttgctttga

Function

NR:

description
PREDICTED: uncharacterized protein LOC108267494

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303466.1 True 1757 mRNA 0.39 4 16197701 16204202

Neighbor

gene id symbol gene type direction distance location
LOC117597111 LOC108267494 coding upstream 45264 16145424 ~ 16152437 (+)
LOC113540526 LOC108267491 coding upstream 57831 16135364 ~ 16139870 (+)
casp23 NA coding upstream 68392 16125016 ~ 16129309 (+)
slc7a7 slc7a7,LOC107558406,LOC107738042,LOC107683525,LOC107731885,LOC107574338 coding upstream 77382 16108976 ~ 16120319 (+)
si:ch211-212k18.5 sall2 coding upstream 89964 16098883 ~ 16107737 (+)
tkfc tkfc coding downstream 52463 16256665 ~ 16264197 (+)
si:dkey-9k7.3 LOC108267726,LOC108434601,LOC103037388,LOC105895467 coding downstream 60052 16264254 ~ 16277494 (+)
LOC113539958 LOC108434586 coding downstream 74788 16278990 ~ 16284284 (+)
ovol1a LOC108267728,LOC108434587,LOC103038355 coding downstream 87617 16291819 ~ 16298721 (+)
mus81 mus81 coding downstream 95739 16299941 ~ 16310157 (+)
G65199 NA non-coding upstream 134240 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 142556 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 196240 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 326930 15869198 ~ 15870771 (+)
LOC117597190 NA non-coding upstream 640777 15506292 ~ 15556924 (+)
G65335 znf638 non-coding downstream 19216 16223418 ~ 16231115 (+)
G65382 NA non-coding downstream 187927 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 226259 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 227743 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 310435 16514637 ~ 16514841 (+)
LOC113540079 sh3tc1 other upstream 157717 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1538765 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 1928361 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2478247 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2635435 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 106011 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 163754 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1131295 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1405290 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1795956 18000158 ~ 18010962 (+)

Expression


Co-expression Network