LOC117597014


Basic Information

Item Value
gene id LOC117597014
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 848073 ~ 857200 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303498.1
ACATTTCTAAAAGGTGGGAATATTTATGTGCCACAAGGGAAAAAATGTGTTAGCTCGATTTGTAATTCATGTAGTTTGTGtctatttcaataaaatattaacagctgAGAGGAATAAGCGCTAAAActgactgagaaaaaaaacgcAAGTTCAAAAAGCTTGTAAAAGACTGATGCAGGCTGTTACAGATCACTAGCTGTGAGAGTGAAGTGCGCATGCGTGAGATTTACTCGCTCTGAATCGAAACTGAAAGTGTAAAAGATGGAGCTTCAGCGGCACGGAGCGGAGTGGATCAAACCGAGTGTTTAACCTTCACACAtgctgctggtggtgttgtGTCTCAGACATTCACACGGTACCTGGTTAATTCCTCACCTGTTCTCACCTGTGCAgtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCAGGTCCTGCTTTTATTCATCCTCACGTTCatcacagTATCTGTATCAGCTGTCACTCCTGTACAGGTGAAGTTTAATCAGGCTGCTGCTCTGCCCTGTGAATGGGAATGTTCTCTTGAGGCCAAATGGACTCTGTTCAGTGACCGAGATGATGTAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGatttaaaatgttccatgatcaGTACCTGAAGGGAAATCTCACCCTCACCATCACTGCAGCTGATTACAGTATGAGGAACAAATACAcgtgtgagtgtgatggtgaAGACATTAATGATGTGTGTCTCAGCATCGAGAcCATGATATCATCAGTTCAGTTAAACCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGAAGTTGATCTATAAGGGTGGAGATTCAGCAGATCCTTATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTACGCTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATGGGGGAGTTTACATCGTCCGCGACACAGAGAATAATGAAGACCTTCATATTTACGCAGTATCAGTGAGAGatCAGCAGGAGAGAGCGCTACCATTGTGGGCGATTGTCCTGATAGTGCTGGTGGTGGCAGGGCTGTGCTTCTGCTGCTGCAGCTTCTTGTTGCAGAGTAAATCTGACTTCAGTTCTACCAAATTGCTAAACTTGTATAGAGGATCAGCAGTGGAGCAGGAAGAGAACAGACCTTGAATGGTACCTCAGAAATGCCTAAACTGCCAGAGAAGCAAATGATGATGAAGCAGGAAGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGACTTATAACTTCATACAGCATGTTtggattattttctgttttgcatCGTTGTTTCTGCTCTGACTTTCTCCAGAAGTGCTCAGGTTTGTGAACCCTGCAAGCTCATGTTTTTTCCACCTGTCTGTTGTGATTCTTCTCCTTGTGAGCTGCTCCATGTCAGTCTGAGCTGCTCAGTAACTTTcccactagctgggactgatcagtgtttactgggtgtgtcctcacacacacgtgttcactagctgggactgatcagtatttactgggtgtgtcctcacacacacgtgttcactagctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303498.1 True 1652 mRNA 0.45 7 848073 857200

Neighbor

gene id symbol gene type direction distance location
LOC117597015 NA coding downstream 128466 710359 ~ 719607 (-)
LOC117597018 NA coding downstream 143695 700049 ~ 704378 (-)
LOC117597016 NA coding downstream 526384 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 575453 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 663100 177871 ~ 184973 (-)
dis3l2 dis3l2 coding upstream 6178 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 67834 925034 ~ 933915 (-)
LOC113524137 LOC108267904 coding upstream 79960 937160 ~ 942590 (-)
LOC113524140 NA coding upstream 87844 945044 ~ 961033 (-)
LOC113524120 NA coding upstream 109830 967030 ~ 981643 (-)
G57745 NA non-coding downstream 2057 507094 ~ 846016 (-)
G57850 NA non-coding downstream 6412 827321 ~ 841661 (-)
G57787 NA non-coding downstream 20643 364792 ~ 827430 (-)
G57816 NA non-coding downstream 21489 544163 ~ 826584 (-)
G57848 NA non-coding downstream 22209 822250 ~ 825864 (-)
G57742 NA non-coding upstream 547 857747 ~ 861437 (-)
G57861 NA non-coding upstream 52317 909517 ~ 910029 (-)
G57877 NA non-coding upstream 155714 1012914 ~ 1013189 (-)
LOC117596994 NA non-coding upstream 181825 1039025 ~ 1040876 (-)
G57895 NA non-coding upstream 218021 1075221 ~ 1075426 (-)
G57838 NA other downstream 102042 683488 ~ 746031 (-)
G57740 NA other downstream 113302 733555 ~ 734771 (-)
G57830 NA other downstream 233830 612243 ~ 614243 (-)
LOC117597012 NA other downstream 350510 347059 ~ 497563 (-)
LOC117597013 NA other downstream 396380 375243 ~ 451693 (-)
G57868 NA other upstream 128711 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 153025 1010225 ~ 1029025 (-)
G58190 NA other upstream 835126 1692326 ~ 1692997 (-)
G58534 NA other upstream 1213824 2071024 ~ 2104011 (-)
LOC113523983 NA other upstream 1347352 2204552 ~ 2222099 (-)

Expression


Co-expression Network