LOC117597016


Basic Information

Item Value
gene id LOC117597016
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 303683 ~ 321689 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303501.1
CGCAGGAGGAGCTTCAGCACGCAGGAGGAGCTTCAGCACGCAGGAGGACCGAGTGTTCAACCTTCACACGtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCAGGTCCTGCTTTTATTCATCCTCACGTTCatcacagTACCTGTATCAGCTGTCACTACTGTACAGGTGAAGTTTAATCAGGCTGCTGCTCTGCCCTGTGAACGGAAATGTTCTCGTGAGGCCAAATGGACTCTGTTCAGTAACCGAGATGATGCAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTAAAATGTCCTATGATCAGTACCTGAAGGGAAATCTCACCCTCACCATCACTGCAGCTGATTACAGTATGAGGGGTTTATACACGTGTGAGTGTGATGACCGAGACATTAAAGATGTGCGTCTCAGCATCGAGAcCATGACATCATCAGTTCAGATAAACCCTGGTGACGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGGAGGTGATCTATAAGGGTGGAGATTCAGCAGATCCTTATGGTGAACAGATCTGCACTGTGGATAGAAGCTCACTACGCTGTACAGCTGAATACACACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATCGGGGAGTTTACATCGTCCAGGACACGGAGAATAATGAAGACCTTCATATTTACTCAGTATCAGTGAGAGagagagcgctACCAGTGTGGGCGATTATCCTGATAGTGCTGATGGTTCTTCTGCTTGTTGCGCTGCCTGTGATGATAATCTGCTACCTGAGGAATCGGTGCTGCCAAAGAGATGAAAGGAGCAGCAGTGGAGCAGGAAGAGACCAGACCTGGAATGGTACCTCAGAAATGCCTAAACTGCCAGAGAAACAAATGATGATGAAGCAGGAAGAGAACCTGAAGCTCAAACATAAGAATGGAGTAACAGAGGGAAGAGACTTATAACTTCATACAGCATGTTTGGATTAttactttttgttttgcatCGTTGTTTCTGCTCTGACTTTCTTCGGAAGTGTTCAGGTTTGTGAACCCTGCAAGCTCATGTTTTTCCCACCTGTGTGAAGGTTAAAAACTCGGTTTGCTCTGCTGCTGAAGCTGCGCCTTTTACACTTTCAGTTTCTCTAATTCCTGTcagctgttaatattttattgaactAGACACAAACTACATGAATTACAAATCGAGCtaacacatttttccccttGTGGTGCATAAATATTCCCACCCTTTAGAAATGTTGGTCCATTGATACATGGTAAACAATGTGCATTATGAAATATAGGCATCCAGTAAAAcagctgtgtttaattttaaaaactgtgagAAACTGAGTTTAATCATACTTTTATTCAGTGTCCTACAAAATTAATGACACTGAACATACGgagacaaataataataaaatagctgggactgatcagtgtttactgggtgtgtcctctgTTACGACCCACACCAGTACTGCTGGCATCAACTTCCAGCTTGAAGGGTTTTCCAAATTAGGGgcaaacactgatcagtcccagctagtgaacacgtgtgtgtatgaggacacacccagtaaacactgatcagtcccagctagtgaacacgtgtgtatgaggacacacccagtaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303501.1 True 1693 mRNA 0.45 6 303683 321689

Neighbor

gene id symbol gene type direction distance location
LOC113525282 LOC108267103 coding downstream 31063 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 118710 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 195589 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 219219 65830 ~ 84464 (-)
LOC117597018 NA coding upstream 378360 700049 ~ 704378 (-)
LOC117597015 NA coding upstream 388670 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 526384 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 541689 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 603345 925034 ~ 933915 (-)
G57727 NA non-coding downstream 41347 222221 ~ 262336 (-)
G57723 LOC108267083 non-coding downstream 47007 213341 ~ 256676 (-)
G57716 NA non-coding downstream 96528 203973 ~ 207155 (-)
G57711 NA non-coding downstream 106017 192687 ~ 197666 (-)
G57706 NA non-coding downstream 120418 183056 ~ 183265 (-)
G57778 NA non-coding upstream 4656 326345 ~ 357054 (-)
G57760 NA non-coding upstream 14581 336270 ~ 421309 (-)
G57752 NA non-coding upstream 22882 344571 ~ 394411 (-)
G57763 NA non-coding upstream 32318 354007 ~ 549005 (-)
G57786 NA non-coding upstream 39050 360739 ~ 361102 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 3666 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 205566 84815 ~ 98117 (-)
LOC117597012 NA other upstream 25370 347059 ~ 497563 (-)
LOC117597013 NA other upstream 53554 375243 ~ 451693 (-)
G57830 NA other upstream 290554 612243 ~ 614243 (-)
G57838 NA other upstream 361799 683488 ~ 746031 (-)
G57740 NA other upstream 411866 733555 ~ 734771 (-)

Expression


Co-expression Network