LOC117597018


Basic Information

Item Value
gene id LOC117597018
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 700049 ~ 704378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303503.1
AAAGATGGAGCTTCAGCAGCACGGAGCGGAGTGGATCAGACCGAGTGTTTAACCTTCACACGGTACCTGGTTAATTCCTCACCTGTTCTCACCTGTGCAgtgctgctggtggtgttgtGTCTCAGACATGGAGTCCTGCAGGGTTCCTCACCAGGTCCTGCTTTTATTCATCCTCACGTTCatcacagTATCTGTATCAGCTGTCCCTACTGTACAGGTGAAGTTTAATCAGGCTGCTGCTCTGCCCTGTAAACGGAAATGTTCTCGTGAGGCCAAATGGACTCTGTCCAGTAACCGAGATGATGCAGTGGCTCGGTGTGATCAGACATCCTGCTGGTCACTAAAGGAGGGATTTAAAATGTCCCATGATCAGTACCTGAAGGGAAATCTCACCCTCACCATCACTGCAGCTGATTACAGTATGAAGGGTTTATACATATGTGAGTGTGATGGCACAGACATTAATGATCTGCGTCTCAGCATTGAGAcCATGGCATCATCAGTTCAGATAATCCCTGGTGAAGATCTGCAGCTGGATTTGCACGTATCAGAGCGAGTGGAGGTGATCTATAAGGGTGAAGATTCAGCAGATCCACATGGTGAACAGATCTGCACCGTGGATAGAAGCTCACTACACTGTACAGCTGAATACAGACCGAGAACATCACTCACTAACACAGTTCTTACACTGAGAGGAGTAAAGCTGACTGATCGGGGAGTTTACATCATCCGGGACACGGAGAATAATGAATATCTTCATATTTACGCAGTATCAGTGAGAGatgaGCTACCATGGTGGGCAATTATCCTGACAGTGGCAGGGCTGCTGCTTGTTGTTGTCCTGCTTGTGATGATCCTGGTGTATCAGAGGAAACGGCATCCGAGCTCCTGAGAACTTTACACAGAAGAGTGTAGCAACAGCAGGAGAACAGATCTTAAATGGCAACACAGCAATGATCAACTCAGGCACAAAGGATAATAGGATAAACAACAAACAGACTTTTATAATCAGGAACCGTAACGAGCTCTGAAGTGACAACGCAAAATATCACGGGTCAGATTGAAGTTTATTGGTAAGGAACATCAAAAACCCTGCTTTCGCTTGGAGATCACGAGTTTAAGTCCCCACAATACCACAGCCGTTCGTGGCCGTGAGTACAAGAGGGctaaactggctgtgctctctgggtgggaggggcatactctctctcccctgtcaatcacagtgacactagcctattgtagcgctttcctctgagtttGATTCTGCTCCTGGGatcctgtgtggagtttcactaTATTTATCCTAAATTTCCCCTTTGGGATGAAAAACGAAtgtctacctatctatctatctatctatctatctatctatctatctatctatatatctgtctATTCAtatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303503.1 True 1407 mRNA 0.46 5 700049 704378

Neighbor

gene id symbol gene type direction distance location
LOC117597016 NA coding downstream 378360 303683 ~ 321689 (-)
LOC113525282 LOC108267103 coding downstream 427429 262446 ~ 272620 (-)
LOC113525290 NA coding downstream 515076 177871 ~ 184973 (-)
bcl10 bcl10 coding downstream 591955 99678 ~ 108094 (-)
ssx2ipa ssx2ip coding downstream 615585 65830 ~ 84464 (-)
LOC117597015 NA coding upstream 5981 710359 ~ 719607 (-)
LOC117597014 NA coding upstream 143695 848073 ~ 857200 (-)
dis3l2 dis3l2 coding upstream 159000 863378 ~ 886395 (-)
LOC113524111 LOC108267115,LOC108415103 coding upstream 220656 925034 ~ 933915 (-)
LOC113524137 LOC108267904 coding upstream 232782 937160 ~ 942590 (-)
LOC117597022 NA non-coding downstream 817 696118 ~ 699232 (-)
G57747 NA non-coding downstream 1777 452633 ~ 698272 (-)
G57761 NA non-coding downstream 25561 600626 ~ 674488 (-)
G57837 NA non-coding downstream 26326 672869 ~ 673723 (-)
G57836 NA non-coding downstream 27252 672019 ~ 672797 (-)
LOC117597026 NA non-coding upstream 30543 734921 ~ 748267 (-)
G57843 NA non-coding upstream 47208 751586 ~ 752375 (-)
G57844 NA non-coding upstream 62827 767205 ~ 767558 (-)
G57848 NA non-coding upstream 117872 822250 ~ 825864 (-)
G57849 NA non-coding upstream 118402 822780 ~ 824304 (-)
G57830 NA other downstream 85806 612243 ~ 614243 (-)
LOC117597012 NA other downstream 202486 347059 ~ 497563 (-)
LOC117597013 NA other downstream 248356 375243 ~ 451693 (-)
eif2b5 eif2b5,LOC107671691,LOC107567864,LOC107660395 other downstream 400032 279982 ~ 300017 (-)
LOC117596995 LOC108268238 other downstream 601932 84815 ~ 98117 (-)
G57740 NA other upstream 29177 733555 ~ 734771 (-)
G57868 NA other upstream 281533 985911 ~ 1048841 (-)
LOC117597039 NA other upstream 305847 1010225 ~ 1029025 (-)
G58190 NA other upstream 987948 1692326 ~ 1692997 (-)
G58534 NA other upstream 1366646 2071024 ~ 2104011 (-)

Expression


Co-expression Network